Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_10g0529500 | OGI:10062680 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr10:20595069-20596048 | ||||||||
| Gene Symbol | GSTU30, OsGSTU30 | ||||||||||
| DNA seq | AGGAAATCTGAAAACTCCCCGGGCGTAGTGCAGGAAATGGCAGGAGGAGGAGGAGCAGGCGAGCTCAAGCTGCTCGGACACTGGGCGAGCGCCTACGTCACCAGAGTGAAGCTCGCGCTCCACCTCAAGGGCGTGAGCTACGAGTACGTCGAGGAGGATCTCCGCAACAAGAGCGACCTCCTCCTCGCCTCCAACCCGGTGCACAAGACGGTGCCCGTGCTCATCCACAACGGCAACCCCATCCGCGAGTCGCAGATCATCGTGCAGTACATCGACGAGGCCTTCTCCGGCGCCGGCGACTCCCTCCTCCCCGCCGACCCCCACGAACGCGCCGTCGCTCGCTTCTGGACCGCCTATATCGAAGACAAGGTAAATTCGGTTCTCTTCTGATCAATTTTTCATTTGTGTGTGAATAAATTCAGTTCTCTTCACTGCCGATGATCGGTGAGATGATACGTGTGTGATCTCGTGCGTGCCGTGCAGCTGGTGGCGCCATGGGAGAAGGTGTTCAGGGCCAAGACGGAGGAGGAGAGGGCCGCGTGGATGAAGCAGATGTTCGTCGCGGTGGAAGCTCTCGAGGGAGGCCTGAAGGAGTGCTCCAAGGGGAAGGGATGCTTCTTCGGCGGCGACAGCGTCGGCTACGTCGACGTCGTGCTGGGGGGTGGCGTCTCCTTCGTGCACGCCAACGACGTGATCACCGGTGGAAAGCTCTTCGACGCGGCGAAGACGCCGCTGCTGGCGGAGTGGTTGGGGCGCTTCGGCGAGCTCGACGCCGCCAAGGCGGTGCTGCAGGACGTCGACAGGGCAGTGGAGTACACCAAGGTGCTGTACGCACGGAATGCCGCCACTACCGCCGCAAACAACTGAATTTACTCAGCTTAAGCAGGCGTCGCGACGTGTCTCGGGCTCTCGGCTGGCTGCGTGCCTTGCTCGGACAAATGTACGGAGGACAGCTGTGGATTAGATTGTTCAGTATTTTC
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| CDS seq | ATGGCAGGAGGAGGAGGAGCAGGCGAGCTCAAGCTGCTCGGACACTGGGCGAGCGCCTACGTCACCAGAGTGAAGCTCGCGCTCCACCTCAAGGGCGTGAGCTACGAGTACGTCGAGGAGGATCTCCGCAACAAGAGCGACCTCCTCCTCGCCTCCAACCCGGTGCACAAGACGGTGCCCGTGCTCATCCACAACGGCAACCCCATCCGCGAGTCGCAGATCATCGTGCAGTACATCGACGAGGCCTTCTCCGGCGCCGGCGACTCCCTCCTCCCCGCCGACCCCCACGAACGCGCCGTCGCTCGCTTCTGGACCGCCTATATCGAAGACAAGCTGGTGGCGCCATGGGAGAAGGTGTTCAGGGCCAAGACGGAGGAGGAGAGGGCCGCGTGGATGAAGCAGATGTTCGTCGCGGTGGAAGCTCTCGAGGGAGGCCTGAAGGAGTGCTCCAAGGGGAAGGGATGCTTCTTCGGCGGCGACAGCGTCGGCTACGTCGACGTCGTGCTGGGGGGTGGCGTCTCCTTCGTGCACGCCAACGACGTGATCACCGGTGGAAAGCTCTTCGACGCGGCGAAGACGCCGCTGCTGGCGGAGTGGTTGGGGCGCTTCGGCGAGCTCGACGCCGCCAAGGCGGTGCTGCAGGACGTCGACAGGGCAGTGGAGTACACCAAGGTGCTGTACGCACGGAATGCCGCCACTACCGCCGCAAACAACTGA
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| Protein seq | MAGGGGAGELKLLGHWASAYVTRVKLALHLKGVSYEYVEEDLRNKSDLLLASNPVHKTVPVLIHNGNPIRESQIIVQYIDEAFSGAGDSLLPADPHERAVARFWTAYIEDKLVAPWEKVFRAKTEEERAAWMKQMFVAVEALEGGLKECSKGKGCFFGGDSVGYVDVVLGGGVSFVHANDVITGGKLFDAAKTPLLAEWLGRFGELDAAKAVLQDVDRAVEYTKVLYARNAATTAANN |
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| Function | Probable glutathione S-transferase GSTU6 [UniProtKB/Swiss-Prot:Q06398] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_10g0529500 | OsNip_10t0529500-01 | Chr10 | 20595069 | 20596048 | + | RAP2018-11-26 | ||
| CDS seq | ATGGCAGGAGGAGGAGGAGCAGGCGAGCTCAAGCTGCTCGGACACTGGGCGAGCGCCTACGTCACCAGAGTGAAGCTCGCGCTCCACCTCAAGGGCGTGAGCTACGAGTACGTCGAGGAGGATCTCCGCAACAAGAGCGACCTCCTCCTCGCCTCCAACCCGGTGCACAAGACGGTGCCCGTGCTCATCCACAACGGCAACCCCATCCGCGAGTCGCAGATCATCGTGCAGTACATCGACGAGGCCTTCTCCGGCGCCGGCGACTCCCTCCTCCCCGCCGACCCCCACGAACGCGCCGTCGCTCGCTTCTGGACCGCCTATATCGAAGACAAGCTGGTGGCGCCATGGGAGAAGGTGTTCAGGGCCAAGACGGAGGAGGAGAGGGCCGCGTGGATGAAGCAGATGTTCGTCGCGGTGGAAGCTCTCGAGGGAGGCCTGAAGGAGTGCTCCAAGGGGAAGGGATGCTTCTTCGGCGGCGACAGCGTCGGCTACGTCGACGTCGTGCTGGGGGGTGGCGTCTCCTTCGTGCACGCCAACGACGTGATCACCGGTGGAAAGCTCTTCGACGCGGCGAAGACGCCGCTGCTGGCGGAGTGGTTGGGGCGCTTCGGCGAGCTCGACGCCGCCAAGGCGGTGCTGCAGGACGTCGACAGGGCAGTGGAGTACACCAAGGTGCTGTACGCACGGAATGCCGCCACTACCGCCGCAAACAACTGA
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| Protein seq | MAGGGGAGELKLLGHWASAYVTRVKLALHLKGVSYEYVEEDLRNKSDLLLASNPVHKTVPVLIHNGNPIRESQIIVQYIDEAFSGAGDSLLPADPHERAVARFWTAYIEDKLVAPWEKVFRAKTEEERAAWMKQMFVAVEALEGGLKECSKGKGCFFGGDSVGYVDVVLGGGVSFVHANDVITGGKLFDAAKTPLLAEWLGRFGELDAAKAVLQDVDRAVEYTKVLYARNAATTAANN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.289117 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0529700 | RBH | 1.594376 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g38600 | RBH | 0.0 | 0.175050 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0529500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0017950 | RBH | 1.229825 | 31.132786 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0018340 | SBH | 0.150476 | 4.599095 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0017720 | SBH | 4.510295 | 41.074932 | 5.110811 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0018260 | SBH | 0.248896 | 0.589044 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0018000 | SBH | 3.112496 | 29.378418 | 2.643119 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0339300 | RBH | 0.273151 | 2.6223425 | 0.133553 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0017900 | SBH | 0.130574 | 1.150494 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0363900 | SBH | 0.0152215 | 2.799602 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0017650 | SBH | 0.0 | 0.741699 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0017490 | SBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0018130 | SBH | 0.0 | 7.406737 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0017690 | SBH | 0.379646 | 0.0 | 0.965461 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0018220 | SBH | 0.0 | 0.813295 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G017820 | SBH | 0.000000 | 2.472020 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0018020 | SBH | 0.0 | 0.000000 | 0.0 |
