Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_10g0392500 | OGI:10009590 | 10/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr10:13080825-13084158 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TAAGAACCCATTCAGACAGTGCAGACCCACTATAAGTCCATGTGCAAGCTTCTTATCCTATTCCAATCCACAAAAGATGCACAATAGCATGAATGGCTGCCTGGTCGTGCAAACATGGAAGGGCTGTACCTACGTTGGAAAATATAACTCACATAATAATTTCTTTACAAAGCAGTCTTGATCGAACAGTCAGAACATCAAACCAAATAGAATGAACATAAAAGAAGAATATATGGAAATTTGTAAGAACAGGAATGATTATTGGTACGCATCACCATCGTTTTGCCATGCTCCTGTGGCATACTAAACCCTAAAAAAATGTTTGTGCTCTAGAATAACACAAGACCAAGGCCGTTGTGATTTGTTAATGTCCCGTTGTGATTTGTTAATGTTTTATAAAGAAATCATATTAGTTATTTAGTGGGCAACCAAGATTTATATTAAACCTTTGAAATTACATCATCGTATGGGTATTGTTTAGCAATGATACTCATAAATGTCATATGTGAGCACACATCAAACCCTAGAGCAGGGTAAGGATGAGAAGTTCAATGTAACTCCTAGGAGTAGTATCAAAGAATTAGAACTTAGAAGAGAACGGTGCAATCAAGAATAAGAATCTCATGATGCTAAGTTTCTTCTTAGTATCTCACTTTTTCCTTTTCAAAGAAGAAAGAGCAACTCAGGTGTATTGAACAAGGTAGCAAATCAAGTATAATCACCCTTTGTAGCGCACTCATGATCAACTTTTGATTTGGGCACAGAATCAGCACGAAAAATTGCTAAATATTTTTTATGTGGCAGTCTAGCATCCTTTAGAATTTCAACTTCAAATTCAATGTTTCAGAAGACGCAAACATAAATAGTGAAACGCCTGCCCAAGGATAAAACTTGATAGGAGGTAATAATCACGGACAAAAATTTGCATCAGCCTTTAGTCCCAAGCAAGCTGGGGTAGCTAAACATCAAACCCAAGGCAAAACGCATGAACCAAAAGGGAACAAATAATGTACTAATAAAGTAGGATAACACAACATATGAGCTGAGAATGGCTAACATCAACGAATATTATTCTTCAGTCATTTATCGGTTTGGACTCAAAAAGCAGCATTACCTTGGAATAATAGTTAAATTTATCTACCCATCTAATCGAACGTGCATGTGGTTACTTCATTGCGTGCATGAATGCTGTTCCTGGTATATATTGCGTTGACACTTAGATACACAGGTACACAGGTCTTAAAAAAAGAGCACATAGGAACCAACTAACCTGGTGCGTCTAGGCCGCCTCAACTAAATGTGTTCCATACTCCCGAAGCATCTCATAGAGTAACAGGAAAACTTTTGACCAGTCTTTACGACTTGAGCAGTTTTCATCTGATTGGCTCGTTTCTCCGATGCCAAGGGATCTAGCCTCTTTCTGAGCCCACCTCTCTCTTTTTGTCATTGCAGTATTTGGTTTGTCTTGAGCAGGCAGAGCGGCGGACCTCCTCCTGGAGCATTGCTGAGCGGCATCATTCTCAGATGAGGGAAATATGTCTAGTGATATTCTCAAGATGTACAAAGCCTACTTCCTCAGTAAAGAATCCTTGTCAACCTGGTGTGAAGAGGCTAAGCATGTCAGCACAATCAACAGGATGAGTATAAAGAGTAAAAGGCTAACAGAAACTGAGTCGGGGCAGAAAGGCCCACCAGTCCCCTGCGAATTTCATCCCAAGATTCATAGGAATTCCTAAGATCATAGTCTTGGGGCTCGTCAGGTCCCGAGAAAACATATTTCAGTGTTGACAAGTAGAGAGAGAGAGAGTATGTTATAAGCATCCAGGCGCTCAGCAGGCCTCAGTGCAAAGATAGAATGGCACGAGGCCCATATAGACTCCAAGAAGCCAGACCTGCACGAGACAAACCATCGAAATTAACATGCACAACATATATAGAAGATAGAAAGCTGATGAGGAGCAGGCCAACCTTGAGAGCTTAAGCTGATGAGGTGCACCTAACTCCAGGTCCATAAAGAGGATTGATGATACATGACATGAGGTGAGTACCTTGTATGTGATCCAATGTACTTAAGGCTGAGAATTCGAGAGCTCTGGCTGTCCAAGACACGACCAGCGGCAGGAATGTCCTGCACTGCAGAACTTCTGCACAGTACAGTGCGTGTTTAGCATGCTTTCTTGCAACAATTCATCCACCATGCATTACTTTTCAGTAAACGGATTACACAAAAACAAAACTGGGAGCAAGGTCATCAGACCTGTTAATTATCACATAATCTCTTCCTATCCTGACTGAATCTGAAGTAAAATATGCAAGAAACAACTCTAATTAAGTACCAACAGGAAGCCTAAACAAAAACCGTAGATCCATAAAGTCATAGAGAGGATTTGATGGTACATGACATGAAAATATGAGATGAGTACTTTCTATGCGATTCAGTGTACTCAAGGCTGGGAACGCCAGTCCAAGAATTTTTTTTTTAAAAAAAAATGTGTTGGCTAGAAGGAGCTAGCTAGCCAACCGATGGAATTAAGATAGGAAGAGTCACATATTTTCAATCCTTCATTTGATCCATACGAAAGGTGAAGAGTTTAGGAGCGTTGACAACTGAACGCATGTGCCAACTGCAACGTAAACACATCTCCTAGTCCAAGAATTTCCTAGGCAAGAGAGAGCTGTGCATGTTTAACATGCTGCCTTGCAAGTTGCAATCATTTATCCGCCATGCATTATTTTGCTCTTCACTAATTCTATGTCATGACAGGAAAACAAAAGTGGGAGAAAGACTATCATACCTGCGAATCACCAAATAAGATCTGTAATCTCTTTCAGCCCTGACGAGCACGGAGCACCTGGAACTATACCTGGAACAAGTTGAGTTTCTGAAACCAGCGAAGAGCTAATGCGGCACAGCTGCTTCTCTCCGCCCTCCCGCCGCCACCGTATCGTGCAGAGGATAGGGGTAAAGGGTGTACGGACAAGTCGAGGGAGCACGAGCACCATCCCCGGCGCCAGAGCCCGGAGCGAGGGCAGCCAGATCCACCGGTGGGGAGGCCTAGACCATCGGCTCCGGCCACCCTCGAACCAGATCGGGCACCCGAGCGGAGTGGAGAGCGTGAAGGAGAGGGAAGCGGTGGGCGCGTGGAGATGAAAGGGGAGAAGAGGGAAGCGACGGCCAGCACCACTCTTGTCCGGGTGGCTGGATCTTCCGGCGCGGCGAAGATGGCTAGAAGAGCGTGGAACGGCGGTGGCGATGACGGCACATGCGAGGAGAGGAGAAGGGCGAGGCGGTGCGCGCGAGGGAGGAGGTGAGGCGGCGCGTGCGTGCGAGCGC
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| CDS seq | CTCCTCGCATGTGCCGTCATCGCCACCGCCGTTCCACGCTCTTCTAGCCATCTTCGCCGCGCCGGAAGATCCAGCCACCCGGACAAGAGTGGTGCTGGCCGTCGCTTCCCTCTTCTCCCCTTTCATCTCCACGCGCCCACCGCTTCCCTCTCCTTCACGCTCTCCACTCCGCTCGGGTGCCCGATCTGGTTCGAGGGTGGCCGGAGCCGATGGTCTAGGCCTCCCCACCGGTGGATCTGGCTGCCCTCGCTCCGGGCTCTGGCGCCGGGGATGGTGCTCGTGCTCCCTCGACTTGTCCGTACACCCTTTACCCCTATCCTCTGCACGATACGGTGGCGGCGGGAGGGCGGAGAGAAGCAGCTGTGCCGCATTAGCTCTTCGCTGGTTTCAGAAACTCAACTTGTTCCAGGTATAGTTCCAGGTGCTCCGTGCTCGTCAGGGCTGAAAGAGATTACAGATCTTATT
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| Protein seq | LLACAVIATAVPRSSSHLRRAGRSSHPDKSGAGRRFPLLPFHLHAPTASLSFTLSTPLGCPIWFEGGRSRWSRPPHRWIWLPSLRALAPGMVLVLPRLVRTPFTPILCTIRWRREGGEKQLCRISSSLVSETQLVPGIVPGAPCSSGLKEITDLI |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_10g0392500 | OsNip_10t0392500-00 | Chr10 | 13080825 | 13084158 | - | RAP2018-11-26 | ||
| CDS seq | GTACATTGGATCACATACAAGGTACTCACCTCATGTCATGTATCATCAATCCTCTTTATGGACCTGGAGTTAGGTGCACCTCATCAGCTTAAGCTCTCAAGGTCTGGCTTCTTGGAGTCTATATGGGCCTCGTGCCATTCTATCTTTGCACTGAGGCCTGCTGAGCGCCTGGATGCTTATAACATACTCTCTCTCTCTCTACTTGTCAACACTGAAATATGTTTTCTCGGGACCTGA
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| Protein seq | VHWITYKVLTSCHVSSILFMDLELGAPHQLKLSRSGFLESIWASCHSIFALRPAERLDAYNILSLSLLVNTEICFLGT |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_10g0392500 | OsNip_10t0392500-01 | Chr10 | 13081866 | 13084097 | - | IsoSeq | ||
| CDS seq | CTCCTCGCATGTGCCGTCATCGCCACCGCCGTTCCACGCTCTTCTAGCCATCTTCGCCGCGCCGGAAGATCCAGCCACCCGGACAAGAGTGGTGCTGGCCGTCGCTTCCCTCTTCTCCCCTTTCATCTCCACGCGCCCACCGCTTCCCTCTCCTTCACGCTCTCCACTCCGCTCGGGTGCCCGATCTGGTTCGAGGGTGGCCGGAGCCGATGGTCTAGGCCTCCCCACCGGTGGATCTGGCTGCCCTCGCTCCGGGCTCTGGCGCCGGGGATGGTGCTCGTGCTCCCTCGACTTGTCCGTACACCCTTTACCCCTATCCTCTGCACGATACGGTGGCGGCGGGAGGGCGGAGAGAAGCAGCTGTGCCGCATTAGCTCTTCGCTGGTTTCAGAAACTCAACTTGTTCCAGGTATAGTTCCAGGTGCTCCGTGCTCGTCAGGGCTGAAAGAGATTACAGATCTTATT
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| Protein seq | LLACAVIATAVPRSSSHLRRAGRSSHPDKSGAGRRFPLLPFHLHAPTASLSFTLSTPLGCPIWFEGGRSRWSRPPHRWIWLPSLRALAPGMVLVLPRLVRTPFTPILCTIRWRREGGEKQLCRISSSLVSETQLVPGIVPGAPCSSGLKEITDLI |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A5 | Chr10 | 13082968 | 13083620 | - | OsNip_10t0392500-00 | OsNip_10t0392500-01,OsNip_10t0392500-00 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.277137 | 1.039060 | 2.242515 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g25300 | RBH | 0.865865 | 0.691839 | 0.477099 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0009400 | RBH | 0.437019 | 9.483185 | 6.885305 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0009500 | RBH | 0.128321 | 0.000000 | 3.601118 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0009700 | RBH | 0.000000 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0009220 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G009540 | RBH | 0.220610 | 0.0 | 0.987330 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0009510 | RBH | 0.000000 | 0.000000 | 4.465369 |
