Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_09g0534600 | OGI:09061720 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr09:21012724-21017668 | ||||||||
| Gene Symbol | HSP50.2, OsHsp50.2, OsHSP50.2 | ||||||||||
| DNA seq | GCCTACCACTACGAGCAGGTTGCGGCGGCGGAGGCGAGCGGAGCCGCGGTGGTGCGGATTGAGCGGCGGAGCCGGAGCCGGAGCCGCGGTGGTGCGGATCGAGCGGCGGCGGTGGCCGGCGGGGAGGCGCAACTGGTCGCCGAGGGGAGCATGGCGCTTGACGGTGGAGGTGCGGCCGACGGCAGCGCGGCCAGCAGCCGGGCCACCAGCCCACCAGGTACGTTCGGAGGGGAGGGCGCAGGGCGACGCCTGAGAACGTGTGTGTGGTAGCAGCTACCGTGGCAGTCGGCAGGGCTTTTGTTAGTTTTCTTAGGATTGCTTTTGTTTTCATAGTTATCTTAGGATTACTTTTGTTCCTGGTATGGTTGAACTTGAATGGTACCAAACTTTTCTCTGGAAAAAGAAAATGCTAGCACACTGAACATGCCCTTTGTCGTCCTACCGCACAATTCACTCATATTTCAACATTTATTACAGATAAGTAGTTTGAGTTGTAAAACGTCACCACAACTTTTATTTGTTAAATTATTGTCACAGGACAAATTGTAAAATTTGGTAAAAGAAATTGTAAATTATTTGTTTGATTTGTATTATCAAATGCTCCATATTACTAGTTATGATGACAATATAACATATGAAAGTTAATTTGTCTCTATTTTGTTGTTTAAGGCCACGGCCACTTTTATCCAACAATATGGTTCAATCTTTGGAGGAACCATATCAATATTTCAGGCAGCAATCCCAATAATTTACGGTGCCTTGAAGGGTAGATACTTGCTGACACTAGAGCTTTGGAATGCTAGCATTACGATCATTAACTTGGTGGGAAACACGACGTGGATGATCTATTCTGCCGTCAATAAGGGAGTTGAGCTGTCAATGTTAATGACTAATTCAGTCGCTTGTGGACTGAACATCTACCACTTGCTGTCTATTTATAGACACAACAAGGAAAGGAAAAAAGTAAGTATCTTTTCAAATATTTTTTCCCTTTGTTATTAGAGCATTCACGTTCTAACCTATTTTGTTCTACAAGACAATTTGTCTTGTAAGTTTTATATGCATCAGTTTTCTGGTAATCCTGGTTTTGCTGGAAACAAATGTGGGAGACGACATATTGAGACTGCTGGAGCATTTATTTGGATCACTGGGAAATGTTATGATTGTTTTGTGCCATCTAGTTCAGATCAATAACTTGGTAAGTGACTTATTGAATTCTTTCAATCAAAGAGTATACTAGTTTCCTAATTATTGTCTCATTTGAATTTGCAGTGGTACTCAACTCTGTCACTAGAAATTCACGTTTTCATACTGTTCTATGTACCAAATATACTATTTGCTGCCAGTGAATTGGTTTTGATTGTCTACAAGCAGTACAGCATGAAAATTTATGTCCAGGTAAGTGTCACGACCTGAGGCCATGACAGGATAACCATCATCTTTAACAGTCTGTGATACCAGTCATGTTGTTAATTTGTTTTTTTTTCTCCTTTTAGCTCTCATACATTTTGAACACAATCTTCTATGTGATTGAGCTCCCTGTCATGATTCGCGCAATGATTACAAGTAACTCTCAATCTCAAGTATACAGGGCTCTATTAAAACTCTTCACTTGTTTTTTCTCCTTGTGGTTTGCACTTATTGAACACAATAATTTGCAGATAATCCAGATTCTGACAATGAAGCAATCGATATCGAGAATCAAGCAATTGTAAAGATTGATGGGCAAAAGAAACATCACAATGAGCGTCAAGAGGACAGGGCAGAGAAGAAAACGACCTTCACGGAAGTTTATTTGCTTCCTGCGCCGCCTGGGCTCTTTGGCCAAGGAAAAAGAAAACACAGCGACAACGTATAGTTCACCTGCATTCTGTTTTACATGTTTTGTTTGTATTTTCTTGCTCACTGTGCACTTTTCCGTAGGATACTGCTTCAACCAAAAGAAGAAGAATAACAATCTTACAAAGAAAGCGACGATGGATAGAGCTGAGGGTATTTCCCATTCTATTTTGTTTTACAATATTGTTCTTCCTGCTTTCTGACCTTACTCCACTTTTCTCTAGGACAAGGAAATTCATTTTTCAAAGAGGATGAGAAGTCATATTTATTCAAGATCTATCAAAAGAGGATCTCCCCCCACTAGGACCTTGCAACTCCAAATGGATTCACTATCTGAAGACAGTTATGAGGTAAAACCTTGGTTCACTAGTTTTTCCTTTGAACACCATTCGATTTATCTATATGAGTGAGCATATAGTTTTCTTTATTTGTGGTTTTCTGCAATTAGGATTAAAGTATTATTCAATGTGCATATATAAGTGAAATTATTTGCTTAAGGTCTTGTTCCAATTATTAATGTTGTGTTGTTGTTGTGTAAATATATTGTGATTTCCGTCAACACTGAAATGAAACAACACGTTTTTACTTTTACTTGTGTGAACCATGTTCCAGCTATTAGTGATGTATTATATGATTTTATTTGCTGCGATGTATGTTGTTGGTATTTGCACCCTATGCTGTTTGTTCACAACTGCTATTTACTTACAGCCTGAATATGTTGAGGAGCATCGCCTCAAGGATCTGGTGAAGAACTCTGAGTTCATCAGCTACCCTATCTCCCTGAATGAGAAAAAGATTGAGAAGGAAATCTGTGATGATGAGGAAGTCGATGCTGAAGAGGGAAAGGTTGAGGATGTTGATGAGGAGAAGGAAAAGAAAGGGGAGAAGATCAATGAAGTCTCTCATGAGTGGCATTCCTCGAACAAGCAGAAACCTCTCTCAGATTCAAAGGAGATTACTAGTGAGAACGAGGAAGCTAAAGAGGGAAAGGTTGAGGATGTTGATGAGGAGAAGGAAGAGAAGAAAAAACAAGGGAAGAAGATCAAGGAAGTCTGTCATGAGTGCAACTTGATCAACAAGCAGGAAGCCATCTGGATGAGGAAATCAGAGGTGATCACCAAGGAAGCAGCCTTCTAAAAGAGCTTGACAAACGACTGGGAGGAACATCTGGCTGTCAAGCACTTCTCTGTGGAGGGTCAGCTTGAGTTCAAGGCCATCCTGTTTGTACCCAAGGGAGCACCATTTGACATCTTTGACACCAGAAAGAAGCTTAACAACATCAAGCTGTACGTACGCCGGGTGTTTATCATGGACAACTGTGAGGAGTTGATCCCTGAGTGGCTCAGCTTTGTCGAGGGCGTTGTTGATTATGAAGACCTTCCCCTAAATATCTCATTTGAGCTGCTGCAGCAGAACAAGATCCTGAAGGTGATCCGCAAGAACCTTGTGAAGAAATGCGTCGAGCTGTTCTTTGAGATTGCTGAGAACAAGGAAGACTACAACAAATTCTACAAGGCCTTCTCCAAAAATCTCAAGCTTGGCATCCATGAGGACTCTACCAACAGGACGAAGATTGCTGAGCTCCTGAGGTACCACTCCACCAAGAGTGGTGATGAGTTGACCAGCCTCAAGGACTATGTAGCCCGGATGAAAGAGGGCCAGCGTGATATCTATTAAATCACTGGTGAGAGCAAGAAGGCTGTTGAGAACTCCCCCTTCCTTGAGAAGCTGAAGGACTATGAGGTCCTGTACATGGTTGATGCCATTGATGAGTACGCTGTCGGTCAGTTCATGGAGTTTGAGGGCAAGAAGCTCATCTCTGCCACCAAAGGACTGAAGCTTGATGAGAAGTTTGACAATTTGAGCATAGTGATGAAGGAGGTGCTCGTTGACACAGTGGAGAGGGATGTTTTTTCTGACCGTGTGGTGGACTCTTCCTGCTGTCCAGTCACTGGCGAGTACAGCTGGGTTGCTAACATGGAGAGGATCATGAAGGAGAATGCCATCATGGACGAGCTACCTAACAAATCCCAAGTGAACAAATGTGCCCCAAAGCAAAAGGTTGATATCCTTCCTGTGAAGGAGAATGCTATCAGGCTCCAAAGCAGTGAAGAGAGAGAAGTTAATACTAAATTTTCTGTTACCGGTGAGAGGATTTTTTTTAATAAAAAAATTACAATATGAAGCATGCATCGTCTGATCATTCGTGTTTTGCTGACATAATAACCTACAGGAATCTGTGGAGATGGAAGATGCCTATTCCGATCTATAGTACATGGTGCTTATATTAAACTAATGATGATTCCACCTGATGATAATCTTGAGAAAGATATGGCTGATGACTTAAGAAAAAAGGTATGCTTGTAATGTTCAGATTTACTTGCAATGTGAATCTATACTGTTTCTTAAATACTGGAAGCAACACAGCCATTTCTCTGTCAATTTATCATTTAAAAGATCTGTTTAAATGGTGCCATTGTTAGGTTTGTGATGCGTTGGAGAAGGAATGTGCTGACAAACCCTGGTTAGTTCTACCTGTCCTTGGTTTCTCTGCTTCTAAATATTGAAATATTGTTGAGTTATGCATTCTTATGCTTCTTTATGAGACATCAATTTGCAGGCTTGTTGAGGTGACTGCCATTCCTATATCAAAGAGATGAGGAAACCTCATGTGTGGGGAGGTGAGATAGAAATCTCTATGGCGTCACATGTTTTAAAGTGAGTACTAGCCATGATTTTTGATACTTTTTAAATTATCCATATTTCAGATGCAGTACATATTAGTTCAGTATCCTATCCTATTGGAATGCTTATGCATGTACATTGGGCTTGATGGATTCACTTTTACTATGCTAGGATGCCCATCACCGTGTTCGTGGTGGAAAAAACTGGAGGTTTGAGGGTATTCACCAAATACGGAAAGGAGTATGGACGGAATGCAATACAGGTTCTTTTTGATGGTAATGGACATTATGATGTTCTGAGTTTGCGGTAGTCCAGGACTGCAGGACAGACATTTGTTCCCCCTTTTTTTTTTCTTCCCCAAATACACTTGCTGTAAAAATGTAACCGGAGTTTACCAACAATTAAAAATGTTGTTCTTTCC
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| CDS seq | ATGATCTATTCTGCCGTCAATAAGGGAGTTGAGCTGTCAATGTTAATGACTAATTCAGTCGCTTGTGGACTGAACATCTACCACTTGCTGTCTATTTATAGACACAACAAGGAAAGGAAAAAAACAATTTGTCTTGTAAGTTTTATATGCATCAGTTTTCTGGTAATCCTGGTTTTGCTGGAAACAAATGTGGGAGACGACATATTGAGACTGCTGGAGCATTTATTTGGATCACTGGGAAATGTTATGATTGTTTTGTGCCATCTAGTTCAGATCAATAACTTGTGGTACTCAACTCTGTCACTAGAAATTCACGTTTTCATACTGTTCTATGTACCAAATATACTATTTGCTGCCAGTGAATTGGTTTTGATTGTCTACAAGCAGTACAGCATGAAAATTTATGTCCAGCTCTCATACATTTTGAACACAATCTTCTATGTGATTGAGCTCCCTGTCATGATTCGCGCAATGATTACAAATAATCCAGATTCTGACAATGAAGCAATCGATATCGAGAATCAAGCAATTGTAAAGATTGATGGGCAAAAGAAACATCACAATGAGCGTCAAGAGGACAGGGCAGAGAAGAAAACGACCTTCACGGAAGTTTATTTGCTTCCTGCGCCGCCTGGGCTCTTTGGCCAAGGAAAAAGAAAACACAGCGACAACGATACTGCTTCAACCAAAAGAAGAAGAATAACAATCTTACAAAGAAAGCGACGATGGATAGAGCTGAGGGACAAGGAAATTCATTTTTCAAAGAGGATGAGAAGTCATATTTATTCAAGATCTATCAAAAGAGGATCTCCCCCCACTAGGACCTTGCAACTCCAAATGGATTCACTATCTGAAGACAGTTATGAGCCTGAATATGTTGAGGAGCATCGCCTCAAGGATCTGGTGAAGAACTCTGAGTTCATCAGCTACCCTATCTCCCTGAATGAGAAAAAGATTGAGAAGGAAATCTGTGATGATGAGGAAGTCGATGCTGAAGAGGGAAAGGTTGAGGATGTTGATGAGGAGAAGGAAAAGAAAGGGGAGAAGATCAATGAAGTCTCTCATGAGTGGCATTCCTCGAACAAGCAGAAACCTCTCTCAGATTCAAAGGAGATTACTAGTGAGAACGAGGAAGCTAAAGAGGGAAAGGTTGAGGATGTTGATGAGGAGAAGGAAGAGAAGAAAAAACAAGGGAAGAAGATCAAGGAAGTCTGTCATGAGTGCAACTTGATCAACAAGCAGGAAGCCATCTGGATGAGGAAATCAGAGGTGATCACCAAGGAAGCAGCCTTCTAA
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| Protein seq | MIYSAVNKGVELSMLMTNSVACGLNIYHLLSIYRHNKERKKTICLVSFICISFLVILVLLETNVGDDILRLLEHLFGSLGNVMIVLCHLVQINNLWYSTLSLEIHVFILFYVPNILFAASELVLIVYKQYSMKIYVQLSYILNTIFYVIELPVMIRAMITNNPDSDNEAIDIENQAIVKIDGQKKHHNERQEDRAEKKTTFTEVYLLPAPPGLFGQGKRKHSDNDTASTKRRRITILQRKRRWIELRDKEIHFSKRMRSHIYSRSIKRGSPPTRTLQLQMDSLSEDSYEPEYVEEHRLKDLVKNSEFISYPISLNEKKIEKEICDDEEVDAEEGKVEDVDEEKEKKGEKINEVSHEWHSSNKQKPLSDSKEITSENEEAKEGKVEDVDEEKEEKKKQGKKIKEVCHECNLINKQEAIWMRKSEVITKEAAF |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_09g0534600 | OsNip_09t0534600-01 | Chr09 | 21012724 | 21017668 | + | RAP2018-11-26 | ||
| CDS seq | ATGATCTATTCTGCCGTCAATAAGGGAGTTGAGCTGTCAATGTTAATGACTAATTCAGTCGCTTGTGGACTGAACATCTACCACTTGCTGTCTATTTATAGACACAACAAGGAAAGGAAAAAAACAATTTGTCTTGTAAGTTTTATATGCATCAGTTTTCTGGTAATCCTGGTTTTGCTGGAAACAAATGTGGGAGACGACATATTGAGACTGCTGGAGCATTTATTTGGATCACTGGGAAATGTTATGATTGTTTTGTGCCATCTAGTTCAGATCAATAACTTGTGGTACTCAACTCTGTCACTAGAAATTCACGTTTTCATACTGTTCTATGTACCAAATATACTATTTGCTGCCAGTGAATTGGTTTTGATTGTCTACAAGCAGTACAGCATGAAAATTTATGTCCAGCTCTCATACATTTTGAACACAATCTTCTATGTGATTGAGCTCCCTGTCATGATTCGCGCAATGATTACAAATAATCCAGATTCTGACAATGAAGCAATCGATATCGAGAATCAAGCAATTGTAAAGATTGATGGGCAAAAGAAACATCACAATGAGCGTCAAGAGGACAGGGCAGAGAAGAAAACGACCTTCACGGAAGTTTATTTGCTTCCTGCGCCGCCTGGGCTCTTTGGCCAAGGAAAAAGAAAACACAGCGACAACGATACTGCTTCAACCAAAAGAAGAAGAATAACAATCTTACAAAGAAAGCGACGATGGATAGAGCTGAGGGACAAGGAAATTCATTTTTCAAAGAGGATGAGAAGTCATATTTATTCAAGATCTATCAAAAGAGGATCTCCCCCCACTAGGACCTTGCAACTCCAAATGGATTCACTATCTGAAGACAGTTATGAGCCTGAATATGTTGAGGAGCATCGCCTCAAGGATCTGGTGAAGAACTCTGAGTTCATCAGCTACCCTATCTCCCTGAATGAGAAAAAGATTGAGAAGGAAATCTGTGATGATGAGGAAGTCGATGCTGAAGAGGGAAAGGTTGAGGATGTTGATGAGGAGAAGGAAAAGAAAGGGGAGAAGATCAATGAAGTCTCTCATGAGTGGCATTCCTCGAACAAGCAGAAACCTCTCTCAGATTCAAAGGAGATTACTAGTGAGAACGAGGAAGCTAAAGAGGGAAAGGTTGAGGATGTTGATGAGGAGAAGGAAGAGAAGAAAAAACAAGGGAAGAAGATCAAGGAAGTCTGTCATGAGTGCAACTTGATCAACAAGCAGGAAGCCATCTGGATGAGGAAATCAGAGGTGATCACCAAGGAAGCAGCCTTCTAA
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| Protein seq | MIYSAVNKGVELSMLMTNSVACGLNIYHLLSIYRHNKERKKTICLVSFICISFLVILVLLETNVGDDILRLLEHLFGSLGNVMIVLCHLVQINNLWYSTLSLEIHVFILFYVPNILFAASELVLIVYKQYSMKIYVQLSYILNTIFYVIELPVMIRAMITNNPDSDNEAIDIENQAIVKIDGQKKHHNERQEDRAEKKTTFTEVYLLPAPPGLFGQGKRKHSDNDTASTKRRRITILQRKRRWIELRDKEIHFSKRMRSHIYSRSIKRGSPPTRTLQLQMDSLSEDSYEPEYVEEHRLKDLVKNSEFISYPISLNEKKIEKEICDDEEVDAEEGKVEDVDEEKEKKGEKINEVSHEWHSSNKQKPLSDSKEITSENEEAKEGKVEDVDEEKEEKKKQGKKIKEVCHECNLINKQEAIWMRKSEVITKEAAF
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.075947 | 0.155772 | 0.619034 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g36420 | RBH | 0.000000 | 0.106871 | 0.148983 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0534600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0017710 | RBH | 0.044474 | 0.0 | 0.285217 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0017810 | RBH | 0.036496 | 0.305511 | 0.334246 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0018030 | RBH | 0.119247 | 0.0 | 1.035448 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0017770 | RBH | 0.017828 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0017910 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0352200 | RBH | 0.096769 | 0.521336 | 0.314532 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0017750 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0340200 | RBH | 0.036063 | 0 | 0.0038465 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0017810 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0017580 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0017600 | RBH | 0.000000 | 1.793811 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0017540 | RBH | 0.0 | 0.0 | 0.061750 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0017660 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G014720 | SBH | 4.146991 | 93.750000 | 38.042618 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0017920 | RBH | 0.0 | 1.247620 | 0.000000 |
