Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_08g0551432 | OGI:08078650 | 6/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr08:27646932-27647735 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ACAAAGATGGCTTGCCACCTAAGATCAGTCAGTTTGCCATCCAAGAGGCAATCCAATGAAGCTGAAATCGAGGATGAGCTGCAAAGCCTAGAGGCAAGCATCTCTTCACCCTCCACGACCATTGATGGTCTGAGGAGGCTTGGAGATGTCTACAATCAGATCGAGGAGATGATCCACTTGCCCAGCAACCAAGTTTTCTCTGCACAGCAAAGGAAAATGTTGGATGGGGAAATGGAGTGCTCCCTCGAGCTGATCGATCTCTGCAGTGCCATGCAAGAGAACTTCACCGAGTTGAAGACCATCATCCAAGATCTGCACGCGGCTCTCAGAAGAGGAGACAGTGCAAGCATTCAGGTCAAGATCCAATCTTTCACCCGCTTGGCCAAGAAGGCGCAGAAGCAATGCAAGAAGATGAGCAAGAAGACTACTTCTGACAAGGAGGACTGCAAGCTGATCAAGCTATTGATCAAGGCTAGAGTGCTCACCGTCTCTCTACTCGAGTCGACATCGTGCCACCTATCACAGCAACTAGTGGTTCCCAAGATGTTTCTTGTCTCTAAGGCATTCCAAAAGAAGAGATCAGTTGTTTGTGAGGAGGAGCAATTGCAGGCATTAGAGTGCATCATTGGAGATCTTGAGAATGGAGCCGAACTTCTGTTCAGGAGAATGATCCAGAGCAGAGTAGCGCTCCTAAACACTCTTAGCTCATAGATTCTCCTAAAGTGAAGACACTCTAACACCCTGTGATTGGCCTCCGCCTTTTAAAGGATCTGCCAATCTTTGTACATCTGTAAATGTATAGAA
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| CDS seq | ATGATGCACTCTAATGCCTGCAATTGCTCCTCCTCACAAACAACTGATCTCTTCTTTTGGAATGCCTTAGAGACAAGAAACATCTTGGGAACCACTAGTTGCTGTGATAGGTGGCACGATGTCGACTCGAGTAGAGAGACGGTGAGCACTCTAGCCTTGATCAATAGCTTGATCAGCTTGCAGTCCTCCTTGTCAGAAATCTTGGATGATGGTCTTCAACTCGGTGAAGTTCTCTTGCATGGCACTGCAGAGATCGATCAGCTCGAGGGAGCACTCCATTTCCCCATCCAACATTTTCCTTTGCTGTGCAGAGAAAACTTGGTTGCTGGGCAAGTGGATCATCTCCTCGATCTGATTGTAGACATCTCCAAGCCTCCTCAGACCATCAATGGTCGTGGAGGGTGA
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| Protein seq | MMHSNACNCSSSQTTDLFFWNALETRNILGTTSCCDRWHDVDSSRETVSTLALINSLISLQSSLSEILDDGLQLGEVLLHGTAEIDQLEGALHFPIQHFPLLCRENLVAGQVDHLLDLIVDISKPPQTINGRGG |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_08g0551432 | OsNip_08t0551432-00 | Chr08 | 27646932 | 27647735 | - | RAP2018-11-26 | ||
| CDS seq | ATGATGCACTCTAATGCCTGCAATTGCTCCTCCTCACAAACAACTGATCTCTTCTTTTGGAATGCCTTAGAGACAAGAAACATCTTGGGAACCACTAGTTGCTGTGATAGGTGGCACGATGTCGACTCGAGTAGAGAGACGGTGAGCACTCTAGCCTTGATCAATAGCTTGATCAGCTTGCAGTCCTCCTTGTCAGAAATCTTGGATGATGGTCTTCAACTCGGTGAAGTTCTCTTGCATGGCACTGCAGAGATCGATCAGCTCGAGGGAGCACTCCATTTCCCCATCCAACATTTTCCTTTGCTGTGCAGAGAAAACTTGGTTGCTGGGCAAGTGGATCATCTCCTCGATCTGATTGTAGACATCTCCAAGCCTCCTCAGACCATCAATGGTCGTGGAGGGTGA
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| Protein seq | MMHSNACNCSSSQTTDLFFWNALETRNILGTTSCCDRWHDVDSSRETVSTLALINSLISLQSSLSEILDDGLQLGEVLLHGTAEIDQLEGALHFPIQHFPLLCRENLVAGQVDHLLDLIVDISKPPQTINGRGG |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0552200 | SBH | 0.000000 | 0.000000 | 0.920086 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g43815 | SBH | 0.144332 | 0.305114 | 0.415471 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0551432 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0024800 | RBH | 0.021077 | 0.000000 | 0.198211 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0024580 | RBH | 0.000000 | 0.000000 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0024600 | RBH | 0.0 | 0.000000 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0024900 | SBH | 0.167979 | 0.259811 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0024590 | SBH | 0.000000 | 0.000000 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0024420 | SBH | 0.071184 | 0.171945 | 0.039374 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0023800 | SBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0024160 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0023980 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0024860 | SBH | 0.000000 | 0.000000 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0024070 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G024290 | RBH | 0.0 | 0.000000 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0024460 | SBH | 0.0 | 0.000000 | 0.000000 |
