Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_06g059879F | OGI:05004590 | 1/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr06:23584083-23586986 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GATCTGTAAATTGAGTTGTTAATGAATCCGCTTTATTCGCTGACTCTATATGATATTTCTTTTTCTTTGAAGGAAAAATTCTATAACAAGGTTTGAGACCTTGTATCTATTCCTCTTTTTTCTATACTAGTAGAATTTCATTGCATTGAGTTCTTTCTTAGATCTAGATGGAGTGGAATAGAGAAATAGAAAAAAGTCCTTTCGGATGAAAATGGAAGAATATTACGCCATATATCCCACTTGGACAAATTAGAAGCAATTTTCTCTTATCCTCATTTGTTCCTTCCTTTAGATAAATACTCAAAATCGCCTTACAATAATGCAATTTCGAAGGGACCTTTTCCCTCGTGTTGAGAAAACTTTTCTTCTTCCAATTCTTCTTCATTCAATTCATTTCAAAAAATTCAATTGGTACTCAAAATACTTCCATTGGTATGCGCAAGAAATAAGCCAATTCGGCAGCTTTTTGTTCAATTTCTCGTGGAGTAAAAAACTTCTCATCAGTACGAGTCAAGGGAATGGCCCCCTGGCCCCGGATTTCCATATAGAGGATACGACGAGGAAAAAGACCTTCTTTAACCTGAATTCTAATTGATTGGATATCCCGCATAAGGAATCGAAGGAAGACGCGACGTTTTATTCCAGGGAATCCCCAATGAAAAATGCACACTACTCCCTCTTTTCTATCGAATCGGTCATAACCACTGCCTACATTCCACAAAATAGTGCACCACAAGTAAGCGCTAATGAATAGGCCTGCGATTCCGTAGAAAGACATCACGACCCCCTGTGGAAAAAAAAGAATTTGTTGAGATGGAAGTACAGATATAATATTCTTACCAAGATAATTGGAAGCCCCAACCGCTAAGAATCCTAGTGAACCTAGAAAAAGAATACAGGCCCAGAAAAAATTACCTCTTTTTCGAGAACCTTTTAGAAGTTCTATCCATATGTGTTCTGATCGCCAATTCATATTAGATATACTAACAGCGGTCGATTGAAATTGAGAGAATAAGCTAAATGATTTTGACTTTACTTTTTTTGATTCTGAAATCGCCTTCGCCAACTAGATACTCCTGTAAAATAATTGGTTAGATACATTGACTTTCTATTCAAAAAGTATTTGTTGATCCACTTAAAAAAACTCGCTATACCCGGTTCCGCATATGCATGCATTTATGCTCGTAGCCTATATCCGCATCCATAATCCCCATCCATAGCGGGTTTGCATTTGTGTGTAGAAAGAGCCACATAACACACCATATTATATTACTTACACTACAAAAGATCCGTATTATGATCCTCTGTGGAAATACATTGAGAAAATTCGGTCCCGTCGGTTCTAGACAATCTTATTTTTCTGCACATAAAGAAATAAAGAAGCCATTGCAATTGCCGGAAATACTAAGCCTACTAAAGGCACAAAAATAGAGGGTAAGTTAAAATCCATCATAGAATAGGTGTCTCCATTCAAATTTACTATTTCTATCTATTCGATTTGATCTATTCAAAAAATATCTTAAGATTCTTATGATATAATTAAGTATATCTATTATAACGAATATTGACTATTGTATTTTTGAGTTTGCAAAAAAAGATTTTTTATAGAATACTTTTTTTTAGAATACTAAAGTATTCTAAAAAAAAGAATCGAATGGATTATATAAATAATAAGAAAATAGCAAAAAAGGAGAAGCAATTAAAAAGATTTGATTTTTCTTTTCCGATCCTCGCGGCCTTTCTATCCTTCTAATCGAACTTGAAATTGGATTCAAAGTACGACTTAGTCGAATGCGCCTATTTCGAATCCAAAATCTTTTTCGTCTACTTCCTTCCACATGCAATACTTATTCAACCACTCTCGGACCCCACAAATCCGCTGTAAGGATTGATACATAGGACTTTTAGTTGATTGATATTGCCGTAAAGTTGAAACTTTTTTAGGCTTTTTTATTAAACTGTAATTTCCTCTCTGCATACGTGCTCTTCTAGAAGCATATACAATAATGCGCGGTAAAGGAGGGAAAATAGCATACTCAATCAAGGGACAAATTCTTTTACCTACTACAGATCTCATACTACCCCTTAGACTTTGTAAGGCCATATACCACCCCCAAAGGGTATGAAAATACCGGATGACCTTAGCTTTTCGACGAATCCTCGTCTCGTGCAGCGAAGTCCTGTTAGTAAGACCCCGCACAAAAATGGATTATATAAGAATATAATTCCGAATATTCCTCCGGGTGCGTATAGTAGCATTGCGATTCCGAATCTTTTTTCTTTGTGAATAGAAAAAATTCATTGTATCGTTGGGTCGGAGGTTTGCTCCAGAAAAATTCGGAACAAAACGTCTACCGCGTTGAAGCCCATAGCCCCATGGAGTTCCGCGAAAGTATGATTCTTATCATCAGGAGCCTTTTGAACGCCTCTACGATGGGTCCAGATTCTATAGCAGTCCAATCTGAAATGAAAGACTTCTCGCTCTTGATCGGAGTCGTAAACTAAAACTACCTCTTCATCAAGGTTATAGAAAACTTCGTCATCTAGTTCTACCATTTTGAAAATCAATTCTCTTTTCTTACGAGCATTTCGAGTCACTTGTTGACTCACGATTGTGCCTGTTAAAAGTTTCAAAATGTCCTCTTTTTTGAAAGAGAGTCTTAGAAAGGGGTCTAACTTCCAAACTTTGTCTTTTTTCATTCATTCTCCTTTAGTTTTTTTCTCTATCTAGAAGTGGAATGGAATAACCCGGTTAAAGGGTAATGATCATACGTCTGTAATGCATTGTATGTCATTGATTCTTTCCCAATAAATGAAAACTTTTTCTGTAAATACTGCGTATTTGATTCCATTATCATATGATAATACTATATTTGTATTTATTTATTGTATTATACCTTTATA
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| CDS seq | ATGAATTGGCGATCAGAACACATATGGATAGAACTTCTAAAAGGTTCTCGAAAAAGAGGTAATTTTTTCTGGGCCTGTATTCTTTTTCTAGGTTCACTAGGATTCTTAGCGGTTGGGGCTTCCAATTATCTTGGTAAGAATATTATATCTGTACTTCCATCTCAACAAATTCTTTTTTTTCCACAGGGGGTCGTGATGTCTTTCTACGGAATCGCAGGCCTATTCATTAGCGCTTACTTGTGGTGCACTATTTTGTGGAATGTAGGCAGTGGTTATGACCGATTCGATAGAAAAGAGGGAGTAGTGTGCATTTTTCATTGGGGATTCCCTGGAATAAAACGTCGCGTCTTCCTTCGATTCCTTATGCGGGATATCCAATCAATTAGAATTCAGGTTAAAGAAGGTCTTTTTCCTCGTCGTATCCTCTATATGGAAATCCGGGGCCAGGGGGCCATTCCCTTGACTCGTACTGATGAGAAGTTTTTTACTCCACGAGAAATTGAACAAAAAGCTGCCGAATTGGCTTATTTCTTGCGCATACCAATGGAAGTA
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| Protein seq | MNWRSEHIWIELLKGSRKRGNFFWACILFLGSLGFLAVGASNYLGKNIISVLPSQQILFFPQGVVMSFYGIAGLFISAYLWCTILWNVGSGYDRFDRKEGVVCIFHWGFPGIKRRVFLRFLMRDIQSIRIQVKEGLFPRRILYMEIRGQGAIPLTRTDEKFFTPREIEQKAAELAYFLRIPMEV |
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| Function | Photosystem I assembly protein Ycf4 [UniProtKB/Swiss-Prot:P0C515] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_06g059879F | OsNip_06t059879F-01 | Chr06 | 23584083 | 23586986 | - | IsoSeq | ||
| CDS seq | ATGAATTGGCGATCAGAACACATATGGATAGAACTTCTAAAAGGTTCTCGAAAAAGAGGTAATTTTTTCTGGGCCTGTATTCTTTTTCTAGGTTCACTAGGATTCTTAGCGGTTGGGGCTTCCAATTATCTTGGTAAGAATATTATATCTGTACTTCCATCTCAACAAATTCTTTTTTTTCCACAGGGGGTCGTGATGTCTTTCTACGGAATCGCAGGCCTATTCATTAGCGCTTACTTGTGGTGCACTATTTTGTGGAATGTAGGCAGTGGTTATGACCGATTCGATAGAAAAGAGGGAGTAGTGTGCATTTTTCATTGGGGATTCCCTGGAATAAAACGTCGCGTCTTCCTTCGATTCCTTATGCGGGATATCCAATCAATTAGAATTCAGGTTAAAGAAGGTCTTTTTCCTCGTCGTATCCTCTATATGGAAATCCGGGGCCAGGGGGCCATTCCCTTGACTCGTACTGATGAGAAGTTTTTTACTCCACGAGAAATTGAACAAAAAGCTGCCGAATTGGCTTATTTCTTGCGCATACCAATGGAAGTA
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| Protein seq | MNWRSEHIWIELLKGSRKRGNFFWACILFLGSLGFLAVGASNYLGKNIISVLPSQQILFFPQGVVMSFYGIAGLFISAYLWCTILWNVGSGYDRFDRKEGVVCIFHWGFPGIKRRVFLRFLMRDIQSIRIQVKEGLFPRRILYMEIRGQGAIPLTRTDEKFFTPREIEQKAAELAYFLRIPMEV |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_06g059879F | OsNip_06t059879F-02 | Chr06 | 23584151 | 23585271 | - | IsoSeq | ||
| CDS seq | ATGCATGCATATGCGGAACCGGGTATAGCGAGTTTTTTTAAGTGGATCAACAAATACTTTTTGAATAGAAAGTCAATGTATCTAACCAATTATTTTACAGGAGTATCTAGTTGGCGAAGGCGATTTCAGAATCAAAAA |
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| Protein seq | MHAYAEPGIASFFKWINKYFLNRKSMYLTNYFTGVSSWRRRFQNQK |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_06g059879F | OsNip_06t059879F-03 | Chr06 | 23584204 | 23585243 | - | IsoSeq | ||
| CDS seq | GAACCGGGTATAGCGAGTTTTTTTAAGTGGATCAACAAATACTTTTTGAATAGAAAGTCAATGTATCTAACCAATTATTTTACAGGAGTATCTAGTTGGCGAAGGCGATTTCAGAATCAAAAA |
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| Protein seq | EPGIASFFKWINKYFLNRKSMYLTNYFTGVSSWRRRFQNQK |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_06g059879F | OsNip_06t059879F-04 | Chr06 | 23584453 | 23585339 | - | IsoSeq | ||
| CDS seq | ATGCATGCATATGCGGAACCGGGTATAGCGAGTTTTTTTAAGTGGATCAACAAATACTTTTTGAATAGAAAGTCAATGTATCTAACCAATTATTTTACAGGAGTATCTAGTTGGCGAAGGCGATTTCAGAATCAAAAA |
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| Protein seq | MHAYAEPGIASFFKWINKYFLNRKSMYLTNYFTGVSSWRRRFQNQK |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_06g059879F | OsNip_06t059879F-05 | Chr06 | 23585446 | 23586196 | - | IsoSeq | ||
| CDS seq | ATGCTATTTTCCCTCCTTTACCGCGCATTATTGTATATGCTTCTAGAAGAGCACGTATGCAGAGAGGAAATTACA |
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| Protein seq | MLFSLLYRALLYMLLEEHVCREEIT |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_06g059879F | OsNip_06t059879F-06 | Chr06 | 23586806 | 23586937 | - | IsoSeq | ||
| CDS seq | AATGGAATCAAATACGCAGTATTTACAGAAAAAGTTTTCATTTATTGGGAAAGAATCAATGACATACAATGCATTACAGAC |
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| Protein seq | NGIKYAVFTEKVFIYWERINDIQCITD |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 62.651623 | 58.994762 | 21.888994 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g39744 | RBH | 33.521893 | 36.034168 | 7.116319 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0036510 | RBH | 141.773773 | 29.819824 | 170.545547 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0036022 | RBH | 155.969009 | 11.228127 | 236.651505 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0036392 | RBH | 609.547729 | 51.310081 | 520.781921 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0035790 | RBH | 159.215408 | 2.618303 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0347400 | RBH | 2614.951172 | 277.126984 | 260.906357 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0011011 | RBH | 129.142441 | 0.779326 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0020310 | RBH | 1476.451904 | 104.557892 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0020100 | RBH | 263.378326 | 42.602730 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
