Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_04g0205000 | OGI:04023030 | 4/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr04:7078459-7078805 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ACGAACTCTTTGTAGTGATTCGCTTTTCACCATTAGCCTCGCGGATCATTGTCCACCTCCTCATGAGTGAGCCTCTCTTAATGTATTGGACATTATGTGGTGAGGCTCGGTGGTAGAGATGATCGAAGACATGGAACGTCACGTCTCCCTCTGGTCCTCCTCTCAGTCCTTGCCCTTCACCTAATCATCTAACGTGCTATTAGGCCTATGAACTTGTGGAAGTCGATGTTGCCTCTGCCGTCGATGTCCACCTCGCTAATAATGTCTTGTAGCTCCGCCTTCGTCGGGTTCAGGCCCAGAGTATGCATGATAGTTTCAAGTTTATTGGTAGTGATTGAACTTGGACA |
||||||||||
| CDS seq | TGTCCAAGTTCAATCACTACCAATAAACTTGAAACTATCATGCATACTCTGGGCCTGAACCCGACGAAGGCGGAGCTACAAGACATTATTAGCGAGGTGGACATCGACGGCAGAGGCAACATCGACTTCCACAAGTTCATAGGCCTAATAGCACGTTAG |
||||||||||
| Protein seq | CPSSITTNKLETIMHTLGLNPTKAELQDIISEVDIDGRGNIDFHKFIGLIAR |
||||||||||
| Function | Calmodulin-like protein 1 [UniProtKB/Swiss-Prot:Q8S1Y9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_04g0205000 | OsNip_04t0205000-00 | Chr04 | 7078459 | 7078805 | - | RAP2018-11-26 | ||
| CDS seq | TGTCCAAGTTCAATCACTACCAATAAACTTGAAACTATCATGCATACTCTGGGCCTGAACCCGACGAAGGCGGAGCTACAAGACATTATTAGCGAGGTGGACATCGACGGCAGAGGCAACATCGACTTCCACAAGTTCATAGGCCTAATAGCACGTTAG |
|||||||
| Protein seq | CPSSITTNKLETIMHTLGLNPTKAELQDIISEVDIDGRGNIDFHKFIGLIAR |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.000000 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0254366 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g15510 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0205000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0004730 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0004280 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0006830 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
