Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_03g0164300 | OGI:03009170 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr03:3469731-3470961 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCTTTCTTCTTCTTCTTCTGCTCTTTCTTCTTCCTTTGGCACTGGAGGCGGCCAGGCTGTCCTCGGCACTGCAGGCGCTGCGGCCGGTTGCACGGCTGCAGGCGAGCTCGCGGTGGGACGGCCAGCTCCGAGCAGTGCAGTGTGCCGACTAGAGTCGCCGAGGTGAGCTGTGGTAAGAGCCGATTTCGGAGACGACACCATATATCAGGTTCTGCTTCCTCCCATTATATTCCATTTTTGATGCGTATCGTGATGCCTATCTTGTCACTTAGAGTGAAACACAAGTAGCAATGGGGGACGGAAATGAGGTCATTGACATTTCATCAGATAGTGACGATGGTGATGCCTATCTTCCGATTTTATCCTTTTTTCGTAGCATTACACCTACTAACAAGTTTGGATTAAACACGAGCAGAACAAGTACAAATTGAGATAAACAAGATTTATCAAAGCGTGCGCCGTTCAACTATTACAACAGGTGTTTATTAATTCTCATTAATTTCAGTTTTAGCTTTCAATGATTACAAAAGTCATATGAACTTGTGTATGTGAACTCTAAAAAACAGGACAATATGGACCTCGTACTTTCTCTGGATTCGACAAGTACTGCTGGTATGGAAATGATGTCACATTAACAAAAAGTATGCATCTTCAAATTGCTCACGTTGCCGCAGTAAATTTGCCGCTGTCAAGAGAACCCTTATGACCAATGCGAAAATGGTATGTAAAATGACTTTGTTGCTTCATGTAGTTTGTACTATGGCTAATCAACTTTTCTTGCAGACCTTTGCAGTCCAGTTTAGCGAGCGGTACATAAACAAGTACATTGGGAGTCCAATTGATGATCTGATGGTGTCTATGGCTGGAACAACACAGTCATATCAAATGAGGCTGAAGAGGTCCAAGGACAGTAGGGCAATGCTGACCACTGGATGGAACCAACTGATTGATGCAAAAGCATTCGATGAGGGTGATGTTTGTCTTTTCCATTTCAAGGAGGTTGACGACGTTCTTGTTCTGAAGGTTCATGTTCTCAAGTAGTGTGGTGGATGAAAATCACCATTTTGTCTGGCAATATGTAATGCCATCCAAATTCGTATGATGTAAAGCTAGTTAAGACCTTATTATGTGGTTGACCTTTCCAGTACAATCTTATTATGTGCTAGTTAAGACTTGATTATGTGGGTCAACTATCTGTTAATGGATGCTTGTCAAGATGGAGGAACTATCT
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| CDS seq | ATGGGGGACGGAAATGAGGTCATTGACATTTCATCAGATAGTGACGATGAACAAGTACAAATTGAGATAAACAAGATTTATCAAAGCGTGCGCCGTTCAACTATTACAACAGGACAATATGGACCTCGTACTTTCTCTGGATTCGACAAGTACTGCTGGTATGGAAATGATGTCACATTAACAAAAAGTATGCATCTTCAAATTGCTCACGTTGCCGCAGTAAATTTGCCGCTGTCAAGAGAACCCTTATGA |
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| Protein seq | MGDGNEVIDISSDSDDEQVQIEINKIYQSVRRSTITTGQYGPRTFSGFDKYCWYGNDVTLTKSMHLQIAHVAAVNLPLSREPL |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_03g0164300 | OsNip_03t0164300-01 | Chr03 | 3469731 | 3470961 | + | RAP2018-11-26 | ||
| CDS seq | ATGGGGGACGGAAATGAGGTCATTGACATTTCATCAGATAGTGACGATGAACAAGTACAAATTGAGATAAACAAGATTTATCAAAGCGTGCGCCGTTCAACTATTACAACAGGACAATATGGACCTCGTACTTTCTCTGGATTCGACAAGTACTGCTGGTATGGAAATGATGTCACATTAACAAAAAGTATGCATCTTCAAATTGCTCACGTTGCCGCAGTAAATTTGCCGCTGTCAAGAGAACCCTTATGA
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| Protein seq | MGDGNEVIDISSDSDDEQVQIEINKIYQSVRRSTITTGQYGPRTFSGFDKYCWYGNDVTLTKSMHLQIAHVAAVNLPLSREPL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.143037 | 0.0 | 0.954937 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0164300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0004870 | RBH | 0.0 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0004800 | RBH | 0.0 | 0.0 | 0.711965 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0004840 | RBH | 0.000000 | 0.0 | 1.805885 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0004770 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0004810 | RBH | 0.0 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0055200 | RBH | 0.4458845 | 4.0689475 | 24.7284595 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0004690 | RBH | 0.0 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0004790 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0004770 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0004750 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0004790 | RBH | 0.0 | 0.0 | 0.347731 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0004770 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G004780 | RBH | 0.000000 | 0.000000 | 0.493248 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0004610 | RBH | 0.0 | 0.0 | 0.0 |
