Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_03g0147150 | OGI:03007070 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr03:2626993-2628503 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GAGGTCTTTCCCCGTGTGCCATTAAAAAAGATGGTGGCTGTCTCTGTGTCACTAAAAAGTTCGAGCCTCCCTCTATACCATCGTCGAACTTTATCGCGTCCTCCACACCACTCCGTCCGTTTTTTTCCTAACGGTGGGTAACGGTGCAGCAAAATGACTTTGTTACCCTTTGAACAAGTTTGCTCCCTTCTTTGCTCTTGTCCGGATTTGGTATAGAAGCAATTTCGAGTGATTATTTTCCTTTTTCTCGAATTGTTTTTTTGGTAGGTTTGTTTGGCGTGAGCAATGGTGAACGACAACGAGCAGGTGGTGAGTGGTGACGATCGCCAAGGCCAGCCCGGACACGTCCGAGAGGAATTGCCGCATCTGCTACCTCGGCCTCGACAGCGCCGCCGCCGAGTCCGGCTCCGGCATGTTCCTCGACTGCTCCTGCAAGGACGACCTCTCCTGCGCCCATAAGCAATGCGCCGAGACCTGGTTCAAATTCAGGGGCAACAGGTAATCTCTGGAACGCCGTCGTGCCCACGGCGCTCTGGAACGCGCACCGGAGCGACGCCGCCACGACATCATCTTCCTCCCCGTCGATCTGCACCACGCCAAGTTGAGCTGCCGCGCCACCATCGTCGTCTCATCACCACGACCAAAACCCCTCAAGAACCCCCAAGATTGATGCACCATGGACGGAGAACGGCATCATCTTCTCCAACTCCGGCCGCCGGCGTCAAACGTCGATTCCGCCTCCTCCGGTGAGCCACTGTACAATTCCTCGCGCACACACCATCCCTGTGGCCTCACTAACCTCGTGGACACACATGCATGCTAGATCTTGGAGACGTTTGAGCTGTCGCCATTCTCCCGGAGCTCCGCATCGCCGTCGAGCCGTTCCAACCGAAGCTGTCGCCGCGCAGGAGGTAGCGTCGGCCGCCGCAGTTGAACCTGCGCCCAGCCGCTGCGCAGCGCCGGTCGCCACCTCCATGACGTCGGTGCCGGTGGCCTCGCAGAGCGCGGAGATGGCGTTCACCGATGACACCCTCTGCACCAAGAACGCGTTCACGGCGAGCTTGGACAGCTCCGCCGACCAGAGGTTGGTGGTGATGATCCGGTCGACGGGGACCCATTGCGCGTACACGTCCTTCAGCGCCTGCACGGCGGCGATGTCGCGGCCACCGATGAGAACGCAGGTCAGCGACGGCCGTGCCCTCCGCCAGGAACTCCAGGTTGGAGAGCACCTGGAACTCGACGACATGGGCGTTGTGCGCGAGGATCTTCTCTATGGCCTCGGCCGTCTTGACGGGGACGGTGGACTTCTCGACGACGACCTTGCTGGAGCGTGACGAGTCGGCGATCATCCTCGCCGCGCTCTCCCAGTAGGCGAGGTCGGCGGCCTTGCCGGCGCCGCCTCGCCGCCTTGCCGCCACGCCACGCCTGGCCGCTTGTCCACCGGTGCCGCCTGGCCTCTCTCTGAAACAAAGCAGAGACTGCAAAGGGCAAGAGCGACATTTTTCCTATCC
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| CDS seq | ATGTCGCTCTTGCCCTTTGCAGTCTCTGCTTTGTTTCAGAGAGAGGCCAGGCGGGGCGTGGCGGCAAGGCGGCGAGGCGGCGCCGGCAAGGCCGCCGACCTCGCCTACTGGGAGAGCGCGGCGAGGATGATCGCCGACTCGTCACGCTCCAGCAAGGTCGTCGTCGAGAAGTCCACCGTCCCCGTCAAGACGGCCGAGGCCATAGAGAAGATCCTCGCGCACAACGCCCATGTCGTCGAGTTCCAGGTGCTCTCCAACCTGGAGTTCCTGGCGGAGGGCACGGCCGTCGCTGACCTGCGTTCTCATCGGTGGCCGCGACATCGCCGCCGTGCAGGCGCTGAAGGACGTGTACGCGCAATGGGTCCCCGTCGACCGGATCATCACCACCAACCTCTGGTCGGCGGAGCTGTCCAAGCTCGCCGTGAACGCGTTCTTGGTGCAGAGGGTGTCATCGGTGAACGCCATCTCCGCGCTCTGCGAGGCCACCGGCACCGACGTCATGGAGGTGGCGACCGGCGCTGCGCAGCGGCTGGGCGCAGGTTCAACTGCGGCGGCCGACGAGCTTCGGTTGGAACGGCTCGACGGCGATGCGGAGCTCCGGGAGAATGGCGACAGCTCAAACGTCTCCAAGATCTAGCATGCATGTGTGTCCACGAGGTTAGTGAGGCCACAGGGATGGTGTGTGCGCGAGGAATTGTACAGTGGCTCACCGGAGGAGGCGGAATCGACGTTTGA
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| Protein seq | MSLLPFAVSALFQREARRGVAARRRGGAGKAADLAYWESAARMIADSSRSSKVVVEKSTVPVKTAEAIEKILAHNAHVVEFQVLSNLEFLAEGTAVADLRSHRWPRHRRRAGAEGRVRAMGPRRPDHHHQPLVGGAVQARRERVLGAEGVIGERHLRALRGHRHRRHGGGDRRCAAAGRRFNCGGRRASVGTARRRCGAPGEWRQLKRLQDLACMCVHEVSEATGMVCARGIVQWLTGGGGIDV |
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| Function | UDP-glucose 6-dehydrogenase 1 [UniProtKB/Swiss-Prot:Q9FZE1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_03g0147150 | OsNip_03t0147150-00 | Chr03 | 2626993 | 2628503 | - | RAP2018-11-26 | ||
| CDS seq | ATGTCGCTCTTGCCCTTTGCAGTCTCTGCTTTGTTTCAGAGAGAGGCCAGGCGGGGCGTGGCGGCAAGGCGGCGAGGCGGCGCCGGCAAGGCCGCCGACCTCGCCTACTGGGAGAGCGCGGCGAGGATGATCGCCGACTCGTCACGCTCCAGCAAGGTCGTCGTCGAGAAGTCCACCGTCCCCGTCAAGACGGCCGAGGCCATAGAGAAGATCCTCGCGCACAACGCCCATGTCGTCGAGTTCCAGGTGCTCTCCAACCTGGAGTTCCTGGCGGAGGGCACGGCCGTCGCTGACCTGCGTTCTCATCGGTGGCCGCGACATCGCCGCCGTGCAGGCGCTGAAGGACGTGTACGCGCAATGGGTCCCCGTCGACCGGATCATCACCACCAACCTCTGGTCGGCGGAGCTGTCCAAGCTCGCCGTGAACGCGTTCTTGGTGCAGAGGGTGTCATCGGTGAACGCCATCTCCGCGCTCTGCGAGGCCACCGGCACCGACGTCATGGAGGTGGCGACCGGCGCTGCGCAGCGGCTGGGCGCAGGTTCAACTGCGGCGGCCGACGAGCTTCGGTTGGAACGGCTCGACGGCGATGCGGAGCTCCGGGAGAATGGCGACAGCTCAAACGTCTCCAAGATCTAGCATGCATGTGTGTCCACGAGGTTAGTGAGGCCACAGGGATGGTGTGTGCGCGAGGAATTGTACAGTGGCTCACCGGAGGAGGCGGAATCGACGTTTGA
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| Protein seq | MSLLPFAVSALFQREARRGVAARRRGGAGKAADLAYWESAARMIADSSRSSKVVVEKSTVPVKTAEAIEKILAHNAHVVEFQVLSNLEFLAEGTAVADLRSHRWPRHRRRAGAEGRVRAMGPRRPDHHHQPLVGGAVQARRERVLGAEGVIGERHLRALRGHRHRRHGGGDRRCAAAGRRFNCGGRRASVGTARRRCGAPGEWRQLKRLQDLACMCVHEVSEATGMVCARGIVQWLTGGGGIDV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.0 | 0.406759 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g05360 | RBH | 0.461817 | 0.300468 | 0.154863 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0147150 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0035400 | SBH | 0.976621 | 123.699905 | 80.885193 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0035070 | SBH | 0.408641 | 58.369762 | 12.916492 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0035160 | SBH | 3.292455 | 216.116882 | 87.073273 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0003590 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0003690 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0042300 | RBH | 0.13167 | 0.006527 | 0.1010905 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0003590 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0042700 | RBH | 3.1335885 | 6.5523445 | 8.870105 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0003690 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0003670 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0003630 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0003690 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0003680 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G003640 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0003500 | SBH | 0.0 | 0.0 | 0.0 |
