Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_02g0118875 | OGI:02003970 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr02:991320-991828 | ||||||||
| Gene Symbol | YR16, YR29, rNBS42 | ||||||||||
| DNA seq | AAAACGACGCTTGCTAGATTTGTATACAACAATAATAGAATTGAAAACCATTTTGATTTGCGAATGTGGGTTTGTGTATCTGACAATTTCAATGAAAAGAGCCTAACCTGTGAAATGTTAGACCATGTGTGTAAAGATAGACAAGAGTACGGAAATATTAGCAATTTTGATGCATTGCAGAAGATCCTTTTGGAGAAAATTAGACACAAAAGATTTCTGCTAGTATTGGATGATATGTGGGAAGATAGGGACAGGAAAGGATGGGAAAATCTGTTAGCTCCATTGAAATGTAATGAAGCAACCGGCTGCATGATTTTAGTGACAACCCGAAGGACATCAGTTGCAAGAATGACTGGAACAATGAGTAAGATAGACGTGAATGGTTTGGATGAAACAGAGTTTTGGTCACTCTTCAAGGCATGGGCGTTTTTAGGTAATGAGAACCAGGAGCGTGATCCAACTTTGCGATCCATTGGGCAACATATTGCTGAAGCATTAAAGGGCAACCC
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| CDS seq | ATGTGGGTTTGTGTATCTGACAATTTCAATGAAAAGAGCCTAACCTGTGAAATGTTAGACCATGTGTGTAAAGATAGACAAGAGTACGGAAATATTAGCAATTTTGATGCATTGCAGAAGATCCTTTTGGAGAAAATTAGACACAAAAGATTTCTGCTAGTATTGGATGATATGTGGGAAGATAGGGACAGGAAAGGATGGGAAAATCTGTTAGCTCCATTGAAATGTAATGAAGCAACCGGCTGCATGATTTTAGTGACAACCCGAAGGACATCAGTTGCAAGAATGACTGGAACAATGAGTAAGATAGACGTGAATGGTTTGGATGAAACAGAGTTTTGGTCACTCTTCAAGGCATGGGCGTTTTTAGGTAATGAGAACCAGGAGCGTGATCCAACTTTGCGATCCATTGGGCAACATATTGCTGAAGCATTAAAGGGCAACCC
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| Protein seq | MWVCVSDNFNEKSLTCEMLDHVCKDRQEYGNISNFDALQKILLEKIRHKRFLLVLDDMWEDRDRKGWENLLAPLKCNEATGCMILVTTRRTSVARMTGTMSKIDVNGLDETEFWSLFKAWAFLGNENQERDPTLRSIGQHIAEALKGN |
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| Function | Putative disease resistance protein RGA1 [UniProtKB/Swiss-Prot:Q7XA42] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_02g0118875 | OsNip_02t0118875-00 | Chr02 | 991320 | 991828 | + | RAP2018-11-26 | ||
| CDS seq | ATGTGGGTTTGTGTATCTGACAATTTCAATGAAAAGAGCCTAACCTGTGAAATGTTAGACCATGTGTGTAAAGATAGACAAGAGTACGGAAATATTAGCAATTTTGATGCATTGCAGAAGATCCTTTTGGAGAAAATTAGACACAAAAGATTTCTGCTAGTATTGGATGATATGTGGGAAGATAGGGACAGGAAAGGATGGGAAAATCTGTTAGCTCCATTGAAATGTAATGAAGCAACCGGCTGCATGATTTTAGTGACAACCCGAAGGACATCAGTTGCAAGAATGACTGGAACAATGAGTAAGATAGACGTGAATGGTTTGGATGAAACAGAGTTTTGGTCACTCTTCAAGGCATGGGCGTTTTTAGGTAATGAGAACCAGGAGCGTGATCCAACTTTGCGATCCATTGGGCAACATATTGCTGAAGCATTAAAGGGCAACCC
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| Protein seq | MWVCVSDNFNEKSLTCEMLDHVCKDRQEYGNISNFDALQKILLEKIRHKRFLLVLDDMWEDRDRKGWENLLAPLKCNEATGCMILVTTRRTSVARMTGTMSKIDVNGLDETEFWSLFKAWAFLGNENQERDPTLRSIGQHIAEALKGN |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.000000 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g02670 | RBH | 0.146529 | 0.253938 | 0.266072 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0118875 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0001360 | SBH | 0.057419 | 1.909588 | 1.050987 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0001430 | SBH | 0.0 | 0.577390 | 0.595032 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0001380 | SBH | 0.356905 | 2.888408 | 3.344306 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0001350 | SBH | 0.004316 | 0.021780 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0001380 | SBH | 0.333875 | 1.036077 | 4.709218 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0016100 | SBH | 2.2675265 | 5.2563905 | 4.0025375 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0001340 | RBH | 0.000000 | 0.142351 | 0.725736 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0016500 | RBH | 0.002307 | 0.097216 | 0.60021 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0001360 | RBH | 0.016734 | 0.160614 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0001300 | RBH | 0.0 | 12.066147 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0001370 | RBH | 0.000000 | 6.383474 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0001420 | RBH | 0.034933 | 0.265393 | 0.107800 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0001410 | SBH | 0.050003 | 2.347372 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G001390 | SBH | 0.660084 | 0.434586 | 1.179133 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0001340 | SBH | 0.341320 | 8.698702 | 1.728364 |
