Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_01g0600000 | OGI:01073480 | 15/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr01:23554268-23557549 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GTCTTGCAGTTTGAGATGGATTCAAGAGAACAAATAAATGACAATTTGACGGGTGGGGCAAGATGGAATTTCAGTATTTCACATTACAGGACACCAAAATGGCAATCGAGAGATCGAGCAAATTATTGAAGCAGTGTTGCAACGATGTGCTCGTCTTGGCTGACATCCAGCACTAGAAAGACTTTCCATAAACAAAATTGTGAAAAGGCAGGAGGTATCTTTGTCATTTCGACAAGCATCAGCTAACAGTGTATTTTATAAACCAGGTCTTAATCAGAACTCTTCTAGACCTTATAGCCGGTTATGGTGAATCCTCTGCCAACAATCTCGCCTACGCAGAACCACGCATAAAGCTCAACTCCAAATAATGTCACAATTCCAAGGTCCTCTACCTTGAGCTCCTTTCTATTCTTCCATACCTGCTTGACACCATCAAATTCCTTCCAAAATGCCTCATAGCGGCCTGGCAAACTGAAGAAAACAACAGCCATATAAGTCATTGAGATCAGAGCTCCAAAGTAAACAAGCATAGTAACGAAGGCATATTCACAATGCAGAATCGATGACTTGACTTGTTCAAGAAAATATGGCAGACACCCCCCCCCCACCCCACCCCCCAAAAAAAAAGAAAAAGAAAAAAAGGTTAAAAGCACAATGCTCCACCCAAGTTGATACACATTCATAAATACATGCACAATTGCTTTGCCTATCAAGTGCAGACCTTGCAACTTCTCCATCCAACAATCCACAACAAGCACGTGACTGGTCCCTATGCATATGCATCTAAGGGCTAACATGACATCTTAATTAATCATTCAAAGTTAAGAGTAAACAAATCCAGTTTACCCAAAGTTCGTCAATCCGTTCATTTCCCTCATGATAGGTAGACATGGGCACCGGCAAATCACAGAAGATGTGTCCCGTCCATCTCATTGTCTCATGCATGCTCTTTGGACCAGCCTGAATTGACCAGTATAGTTTCAACCTGGTGAGCCCTAATTCTAACATCACAGCAGAAGATGGTCAAAAGGTACACCATCTGCTACAGTATTGGAGATAGTGCCTTGATTAAGAGCCCTAATGAAAAAAAATGGAAACAACATACAAAATTCTAATGCAAAAACGTGTAAAAATAAAAATAATAGCTGCTCCTGACCAACCTCAAAACATTTCAACATCAATTTATAACACGTGAAGAAATTGCTCAGCCTTAATTTAACAGACGTGATTGCTAGCCAGAATTATCAATCATGACTTGAAACATTGCAGACAAGATACTAACTAAATCGCATGTTATTGGTTGCACATCATGTATACAACAAAGTTCTGTAAACCAGACTGATCAGTGATCACTGACCTAGCCAGTTTGTTCTGTCATCAGCTCCCACACTGAACAACACCACTCATCAAACCATGTACACAAACAAGGATTAGCATCATTATACAGCAATCAGAAAAAACAATGTTCGTCACAATAATAAAGCAGGCTAAAGTGCGGCCACTGGATTGGGATTCAAGAAATAACTTTTCCGTGATAAAGCCTAATATTGCATCCACACTTGAATTGTTGTCACTTTTTTTATTCTAAACACAGCTGGTTGCCAAGTGAAAAAGAATAGAAGACTGAGGCCCAGAAAAGCATTCATCTTATCCTACAGATTTATGACAGAGCTGTACCTCTATAACATTCTCAGAACAGACAATGGACTAATGTAGATTTTGTATTATAGTTCATAGTAATTAGGTAAATCCCATAAAGTAAATTGGTAATAGATTTTACTGCAATGCCTTTTCTGCAGAAACAAACAAACAAGAAATAATTTCAAACATACTGAACAAACTGCTAATGTAATTACCACAGCAATATTGATATAAGTTCATTTCTTAAATCATACAAAATACATACCATTCCATTTTGTCATTATGTATCATCCACAATAGATTTCACATTTCACTCGGTGTATTTGACTTCTCACACTTTCGCCTAACAGTAATGCATCGTTCTATGTCTTCATGAACCATGGATCCAAGCAAAAATACAAAGGTAACAAGGAATATACAGTAAGAGCCTCAGGTATATCATACTTATTGCATAGGTTTCTTTTGTTACAAACTTTCAAAACTGACAGATTATGGGTCTTACAGAACTCAGTGCCTGCATGACCAGATGAAATGCACTCTTAATAAGTAGTTCCATAATTAATACTGTGCCTATCCTCTTTCACCAAATTATTGAGCATAGCAAGTCTGACCAAAACAATGTACTAGCAGGTAGCGTATTTCAAGGAGAACATCACGCATCCCACAGGCCAAAACATTCAAACAGCCTCATAACACATGGTTACGAGCTCTCCGAAGTTTATACATGCAACAAGTTACACAAGCACAATTCATAAAGGGAGGAGCGTGTGAACAAATGGTCAACTCAAATGATTAAGATTTATAAAGTGCAAGTATGGAAGGGAGCTCTCAAACCCCTAATAGGTCATGACAACAACAAAAGCACAAGTGCACAACCAGACTACCAGACAACAAAAAAAAAACCCATCGTCTAGCGAAATCTACTAACCACTATGTAGGCTCACCCTGACTACCCAAATTGCAGACCATGAGCAGAGCAAGCCATACCAAATTCAGGTTAAACTAGAGTAATCGGAGGCACGATAATTTGGATACCCACCAATTATTGGCGAATTTTCGATCGTGCCAAGCTACATTCGTCGGAACACCCAAGCCTGAACACCCCCCCCCCCCCGGCGCGCAATTGCCAACAGATCGCAACACACCGCCAACTACGAAACAGCGACCAAATGGAGCCGCATGAACAGGCACAGCGGGGGTGAAATCCGGGGATCACCTGGCGAGGCGGGTGTAGAAGAGCTGCTTGGAGAGCTCCTGGCACTTCTCCACGGTGGGTGGCTGCACCACGTGCTGCTTGTTCTTCTCCATCACCTCCTTGTAGTAGGCGCACCCGTGCTTCGACACGAGCTCCGACGCCTGCGCCGCCTTGGACCGTAGCTGCGCCAGCCTCGACGCCATCGCCTGGAGACACACACACCCACACCCACCAACCAAACCCAACACCACACCACACACGCGGATGGAAAAGAGAGAAACCGAGTCAGATCGAACGGGGAAAGCAGATCTGGCCGCCGCGCCGATCCGGGACTCGGAAGGGCCAGCGAGCGGCGGGCGGATCGGAGGGGCTAGGGTTTTGGGGGGGAGTGATTGCTACCGTGGGTGAAGCGCCGGGGAGGGGAGAGGAGAGGTCGCGAGGTGGAT
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| CDS seq | ATGGCGTCGAGGCTGGCGCAGCTACGGTCCAAGGCGGCGCAGGCGTCGGAGCTCGTGTCGAAGCACGGGTGCGCCTACTACAAGGAGGTGATGGAGAAGAACAAGCAGCACGTGGTGCAGCCACCCACCGTGGAGAAGTGCCAGGAGCTCTCCAAGCAGCTCTTCTACACCCGCCTCGCCAGTTTGCCAGGCCGCTATGAGGCATTTTGGAAGGAATTTGATGGTGTCAAGCAGGTATGGAAGAATAGAAAGGAGCTCAAGGTAGAGGACCTTGGAATTGTGACATTATTTGGAGTTGAGCTTTATGCGTGGTTCTGCGTAGGCGAGATTGTTGGCAGAGGATTCACCATAACCGGCTATAAGGTCTAG |
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| Protein seq | MASRLAQLRSKAAQASELVSKHGCAYYKEVMEKNKQHVVQPPTVEKCQELSKQLFYTRLASLPGRYEAFWKEFDGVKQVWKNRKELKVEDLGIVTLFGVELYAWFCVGEIVGRGFTITGYKV |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0600000 | OsNip_01t0600000-01 | Chr01 | 23554268 | 23557549 | - | RAP2018-11-26 | ||
| CDS seq | ATGGCGTCGAGGCTGGCGCAGCTACGGTCCAAGGCGGCGCAGGCGTCGGAGCTCGTGTCGAAGCACGGGTGCGCCTACTACAAGGAGGTGATGGAGAAGAACAAGCAGCACGTGGTGCAGCCACCCACCGTGGAGAAGTGCCAGGAGCTCTCCAAGCAGCTCTTCTACACCCGCCTCGCCAGTTTGCCAGGCCGCTATGAGGCATTTTGGAAGGAATTTGATGGTGTCAAGCAGGTATGGAAGAATAGAAAGGAGCTCAAGGTAGAGGACCTTGGAATTGTGACATTATTTGGAGTTGAGCTTTATGCGTGGTTCTGCGTAGGCGAGATTGTTGGCAGAGGATTCACCATAACCGGCTATAAGGTCTAG
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| Protein seq | MASRLAQLRSKAAQASELVSKHGCAYYKEVMEKNKQHVVQPPTVEKCQELSKQLFYTRLASLPGRYEAFWKEFDGVKQVWKNRKELKVEDLGIVTLFGVELYAWFCVGEIVGRGFTITGYKV |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 4.810289 | 8.798863 | 29.503340 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g41610 | RBH | 1.717329 | 3.292342 | 4.438064 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0600000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0024170 | RBH | 1.846027 | 94.759407 | 19.931101 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0023750 | RBH | 0.141049 | 26.201469 | 10.292782 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0024080 | RBH | 1.302514 | 77.537262 | 24.777586 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0023430 | RBH | 0.389386 | 4.334209 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0030710 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0393900 | RBH | 17.8695355 | 21.70362 | 23.9644345 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0023110 | RBH | 0.633847 | 10.053255 | 5.291277 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0382900 | RBH | 16.3369505 | 10.635675 | 34.1413145 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0023120 | RBH | 0.883224 | 1.760107 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0023110 | RBH | 1.882087 | 89.902557 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0030930 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0023350 | RBH | 1.780709 | 9.448162 | 8.212225 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0023230 | RBH | 1.526510 | 55.880451 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G023450 | RBH | 0.647724 | 45.998783 | 13.254210 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0023160 | RBH | 3.063873 | 73.356262 | 40.375446 |
