Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsNip_01g0575801 OGI:01069400 | 1/16 Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) Chr01:22185305-22186028
Gene Symbol -
DNA seq

CAGATTGAAGCGTATGCTGATTAAAAATAATGTACAATCATAATCAGAATACTAGAAGTATACGCTATTTAATTCATACATATACCCCGCCCATACTTTAAAAATAAAAAAGTAGAATACCAACGAGAATCACAAAGATTATTTCCCTGAGAAATATTCCGGATTCTCAAACTACTGCTACAGACAGATTAACGATCCAACGAGGCAACGACAATCTCTGAACAAAGCCATTTTCCCATTGCACCGTGATGTCACTCCGCCGTCCACCACCTGCATGAGCGCTTAGTCATTCAACTAGTTAATTCATTGGAAATAATGCATCTCTGACCCCAAATCTACGCATCCTAAAACATAAATTCACAAGTTAACAGGAAACACGAAAAAAAGGAAGAAAACGCTCGATCAGCGAGAAGAAAAATCAAAGAAAAATATGAAGGATTACACCGTTGCCTGGGAATAGATACGATCAATGGATCAACACCTCACCTGGGCAAATATCGCCGAACGGCGACACGGGCAGACATCTCGACACCATTGACGCACGGCCGCGCGCACAGGATTGCCGATGGATCGTTGTTGTTGTCCTCCGGCAGACCGCAGACGCCGCGGCCGCGCTCGGCCCATCGCCTGGACATGCATGCCATCGCCGCCACTGGTGAACGCCGCAGCCTCCTGAGTCGCTGATGGATCGCGGCGCCGTCGCCTCCCCGATCCACCGATTTCC

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CDS seq

ATGCATGTCCAGGCGATGGGCCGAGCGCGGCCGCGGCGTCTGCGGTCTGCCGGAGGACAACAACAACGATCCATCGGCAATCCTGTGCGCGCGGCCGTGCGTCAATGGTGTCGAGATGTCTGCCCGTGTCGCCGTTCGGCGATATTTGCCCAGGTGGTGGACGGCGGAGTGACATCACGGTGCAATGGGAAAATGGCTTTGTTCAGAGATTGTCGTTGCCTCGTTGGATCGTTAATCTGTCTGTAG

Protein seq

MHVQAMGRARPRRLRSAGGQQQRSIGNPVRAAVRQWCRDVCPCRRSAIFAQVVDGGVTSRCNGKMALFRDCRCLVGSLICL

Function -

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsNip_01g0575801 OsNip_01t0575801-00 Chr01 22185305 22186028 - RAP2018-11-26
CDS seq

ATGCATGTCCAGGCGATGGGCCGAGCGCGGCCGCGGCGTCTGCGGTCTGCCGGAGGACAACAACAACGATCCATCGGCAATCCTGTGCGCGCGGCCGTGCGTCAATGGTGTCGAGATGTCTGCCCGTGTCGCCGTTCGGCGATATTTGCCCAGGTGGTGGACGGCGGAGTGACATCACGGTGCAATGGGAAAATGGCTTTGTTCAGAGATTGTCGTTGCCTCGTTGGATCGTTAATCTGTCTGTAG

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Protein seq

MHVQAMGRARPRRLRSAGGQQQRSIGNPVRAAVRQWCRDVCPCRRSAIFAQVVDGGVTSRCNGKMALFRDCRCLVGSLICL

Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.0 0.0 0.0

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_05g0296900 RBH 0.000000 0.0 1.151302
Nipponbare | IRGSP 1.0 | MSU LOC_Os05g23194 SBH 0.000000 0.0 0.280362
Nipponbare | IRGSP 1.0 | RAP-db Os01g0575801 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) NA NA NA NA NA
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) NA NA NA NA NA
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_05g0010550 SBH 0.0 0.0 2.627373
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) NA NA NA NA NA
PR 106 | Os127742RS1 | Gramene(+IsoSeq) NA NA NA NA NA
Minghui 63 | MH63RS3 | HZAU NA NA NA NA NA
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_05g0010461 SBH 0.0 0.0 0.000000
Zhenshan 97 | ZS97RS3 | HZAU NA NA NA NA NA
LIMA | Os127564RS1 | Gramene(+IsoSeq) NA NA NA NA NA
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) NA NA NA NA NA
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) NA NA NA NA NA
LIU XU | Os125827RS1 | Gramene(+IsoSeq) NA NA NA NA NA
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) NA NA NA NA NA
N22 | OsN22RS2 | Gramene(+IsoSeq) NA NA NA NA NA
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) NA NA NA NA NA
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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