Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_12g0001060 | OGI:12001850 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr12:744317-747219 | ||||||||
| Gene Symbol | OsRTPP1, RTPP1, - | ||||||||||
| DNA seq | ctaggactgaggtatgtcaaggtccacccaagtatggtgcaccgtgggtggttttgctgcgacggatgagtcgtcggagaggagatcaaaagcagataagctgtaggggtggcgagcagacagtccaaaccagaggttgagctccggcacatactcagctctgccatggaatggcattgtccaggagcccagccggcgccactcatggctaaccgtgtcgaaggcataagtagaatggattggcttattgcaagaaatgtagatggtggtgccgtgaaccaccgtgtaggaggtaatttcggcgttcatgcagccggcgaagggcggtggttgcagagaaacccaatggggggtcatctcacggaaatcgacagaggaagaagagtagttgagcacctcaaagcaaccatccttgattctgtggacgtcgggactccgggtcatcacgtagaggccgtcctccggcggtggttccaacccgttgttgttgttgctgccattgttgttgataatggagagggatatggcgttatacctcttgggagaaatgaggttggggaaggcgaggacggaggaggagtcggcgtcgaagacgacggtgtttcccctgttgtctgcagtgagcatcctgctctcgtggccgaggagacaggcgaagtcgagagacctaagatggtagcgatccacgggggccggctcgaaggcgaacgtcgaacggggaagcttctccaacatctccatggtgtggaggcctggatgcttcctgccaccgtgctcctccatgaatgattcttgtgactttgccgttgcttcttcagctgctcttgttgatgggtagaagagacgattcgcgggtatgcggcgcagagaatagagtccaccggcgccctgcaccaccaggttcacaaatcgtcgtcgtcccatggtacgtatctgctccaaacgccgagacgatacttatttatccggcctgattctaatccagattagacacaccatgcaaacacagctagcaacgagaagatcaataataaatggagagagaaattaaagaagaaattaacctcatacctaccgaccagcagaaattccttccctggagtttataccaaatattatggaggtacgtagtgttgtatgcagtggagctggagatcgacggcgggcggcggcggaggtgcagtccgagacgaccggcgctaggggaaggcgaacctgcggtctttggtccgattaacataactctcctcattattgggcccaatgggccgtccttttccaactctgcacgataggtgaagtctactactctacttttttaaaaaaaaaaaaaaactaaaccggcaggagagctgccaattataTttttaataagtagtagtaaaaaccctagacgggttacaagaaaagaaaaaccaaccaccgactggctgaacagttacacagcacacgccagaactcactaacagctgaaaccactgacggagcccaacgtaggatgtcgttaccaaggttgaccaaaacagcataGggggttctgacttttcaaccgtgtcatcgttgccaagcttgccgccaagcgatacagcagctccgacttcaaaccggatgcaccatcagaacctagatgctgcaaatgatcaagtggtttcgacttcccaagatgaacatcaaccaaagccgcctaagcgccacaatctattcacggccaacaacaaaacccctagaaagaaaatgcagcgtgtcatcgttgcccagcttcgtcactcggacaaagcagctccgactccacctaacaaaatcaaaaaaagagcgaggtcgtccaccgcaaaacaaaaggtggagctagaaatagaaggcctcatcaaaagctagggctaaaaagcttcgaagcaaatgcatagaccatcaacgatatccttgcacgaagaagtttctccaaaacggtgcccccaaggaggacgcgacgtggatcgccgccaccgctcgttcggaagccgaagcaaggttttcacctggagaatggtagggaaaggagaggggtacgctaaaacgacgccttcagggaggagaacgacaccAaaaagtgtcgccgtcgtcagccggccaaacggctcggcgatgcttttgctagcgattccctgtccaaaccctcacaaccaatccgcacaagaaagatcattgccggttgacaatattgtcccttcagcgatccggcctaggccactgccacagatcttcccaccgtcaacgtcgcgcctacacctggtctccttccccgccgccagactccttcctcgcctccacatgctgccgccgacgacgacacaccgtcagccccttcggtcgtgatggcctgccaaccatcaccgccacaggcgccaccgtcgccagccgccaccgccgccgccaccacagccgccatccgcgccgcgcgggtcatcggcgtcgtggagggagcgtcgacgagggtgctgcgccagaggtctcgtggcagcgaggtccttgacgagcccggccggcgtcgcgacacgcgccgcggcccgccgtcgtcgtcgccatcaccatcaccttcgccgccatatccgccaccagcgctgccgccgccgccaccaccgtcagccgccgccgccggccacccccctgccggatctggccggacatggcgcggatctggccaccaccgttgccaccacacacagctcccccggcctccgagcgcaacgtgggtgagacgaggccccgccgccgccgtccttgcggcgcgcggctttgccggcgcccgctcaggcggcggcgaggcggaggaggaggcggggagaggaaggcggcggcgggcgcgtcgcctcccgagccgcccgggggagggcgacgcgggggccccagtctactactccacttgc
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| CDS seq | atgacccgcgcggcgcggatggcggctgtggtggcggcggcggtggcggctggcgacggtggcgcctgtggcggtgatggttggcaggccatcacgaccgaaggggctgacggtgtgtcgtcgtcggcggcagcatgtggaggcgaggaaggagtctggcggcggggaaggagaccaggtgtaggcgcgacgttgacgggaatcgctagcaaaagcatcgccgagccgtttggccggctgacgacggcgacacttttTggtgtcgttctcctccctgaaggcgtcgttttagcgtacccctctcctttccctaccattctccaggtgaaaaccttgcttcggcttccgaacgagcggtggcggcgatccacgtcgcgtcctccttgggggcaccgttttggagaaacttcttcgtgcaaggatatcgttgatgtcggagctgctgtatcgcttggcggcaagcttggcaacgatgacacggttgaaaagtcagaaccccCtatgctgttttggtcaaccttggtaacgacatcctacgttgggctccgtcagtggtttcagctgttaggcgccggtggactctattctctgcgccgcatacccgcgaatcgtctcttctacccatcaacaagagcagctgaagaagcaacggcaaagtcacaagaatcattcatggaggagcacggtggcaggaagcatccaggcctccacaccatggagatgttggagaagcttccccgttcgacgttcgccttcgagccggcccccgtggatcgctaccatcttaggtctctcgacttcgcctgtctcctcggccacgagagcaggatgctcactgcagacaacaggggaaacaccgtcgtcttcgacgccgactcctcctccgtcctcgccttccccaacctcatttctcccaagaggtataacgccatatccctctccattatcaacaacaatggcagcaacaacaacaacgggttggaaccaccgccggaggacggcctctacgtgatgacccggagtcccgacgtccacagaatcaaggatggttgctttgaggtgctcaactactcttcttcctctgtcgatttccgtgagatgaccccccattgggtttctctgcaaccaccgcccttcgccggctgcatgaacgccgaaattacctcctacacggtggttcacggcaccaccatctacatttcttgcaataagccaatccattctacttatgccttcgacacggttagccatgagtggcgccggctgggctcctggacaatgccattccatggcagagctgagtatgtgccggagctcaacctctggtttggactgtctgctcgccacccctacagcttatctgcttttgatctcctctccgacgactcatccgtcgcagcaaaaccacccacggtgcaccatacttgggtggaccttgacatacctcagtcctag
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| Protein seq | MTRAARMAAVVAAAVAAGDGGACGGDGWQAITTEGADGVSSSAAACGGEEGVWRRGRRPGVGATLTGIASKSIAEPFGRLTTATLFGVVLLPEGVVLAYPSPFPTILQVKTLLRLPNERWRRSTSRPPWGHRFGETSSCKDIVDVGAAVSLGGKLGNDDTVEKSEPPMLFWSTLVTTSYVGLRQWFQLLGAGGLYSLRRIPANRLFYPSTRAAEEATAKSQESFMEEHGGRKHPGLHTMEMLEKLPRSTFAFEPAPVDRYHLRSLDFACLLGHESRMLTADNRGNTVVFDADSSSVLAFPNLISPKRYNAISLSIINNNGSNNNNGLEPPPEDGLYVMTRSPDVHRIKDGCFEVLNYSSSSVDFREMTPHWVSLQPPPFAGCMNAEITSYTVVHGTTIYISCNKPIHSTYAFDTVSHEWRRLGSWTMPFHGRAEYVPELNLWFGLSARHPYSLSAFDLLSDDSSVAAKPPTVHHTWVDLDIPQS |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_12g0001060 | OsNaBo_12g0001060.01 | Chr12 | 744317 | 746759 | - | NAM | ||
| CDS seq | atgacccgcgcggcgcggatggcggctgtggtggcggcggcggtggcggctggcgacggtggcgcctgtggcggtgatggttggcaggccatcacgaccgaaggggctgacggtgtgtcgtcgtcggcggcagcatgtggaggcgaggaaggagtctggcggcggggaaggagaccaggtgtaggcgcgacgttgacgggaatcgctagcaaaagcatcgccgagccgtttggccggctgacgacggcgacacttttTggtgtcgttctcctccctgaaggcgtcgttttagcgtacccctctcctttccctaccattctccaggtgaaaaccttgcttcggcttccgaacgagcggtggcggcgatccacgtcgcgtcctccttgggggcaccgttttggagaaacttcttcgtgcaaggatatcgttgatgtcggagctgctgtatcgcttggcggcaagcttggcaacgatgacacggttgaaaagtcagaaccccCtatgctgttttggtcaaccttggtaacgacatcctacgttgggctccgtcagtggtttcagctgttaggcgccggtggactctattctctgcgccgcatacccgcgaatcgtctcttctacccatcaacaagagcagctgaagaagcaacggcaaagtcacaagaatcattcatggaggagcacggtggcaggaagcatccaggcctccacaccatggagatgttggagaagcttccccgttcgacgttcgccttcgagccggcccccgtggatcgctaccatcttaggtctctcgacttcgcctgtctcctcggccacgagagcaggatgctcactgcagacaacaggggaaacaccgtcgtcttcgacgccgactcctcctccgtcctcgccttccccaacctcatttctcccaagaggtataacgccatatccctctccattatcaacaacaatggcagcaacaacaacaacgggttggaaccaccgccggaggacggcctctacgtgatgacccggagtcccgacgtccacagaatcaaggatggttgctttgaggtgctcaactactcttcttcctctgtcgatttccgtgagatgaccccccattgggtttctctgcaaccaccgcccttcgccggctgcatgaacgccgaaattacctcctacacggtggttcacggcaccaccatctacatttcttgcaataagccaatccattctacttatgccttcgacacggttagccatgagtggcgccggctgggctcctggacaatgccattccatggcagagctgagtatgtgccggagctcaacctctggtttggactgtctgctcgccacccctacagcttatctgcttttgatctcctctccgacgactcatccgtcgcagcaaaaccacccacggtgcaccatacttgggtggaccttgacatacctcagtcctag
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| Protein seq | MTRAARMAAVVAAAVAAGDGGACGGDGWQAITTEGADGVSSSAAACGGEEGVWRRGRRPGVGATLTGIASKSIAEPFGRLTTATLFGVVLLPEGVVLAYPSPFPTILQVKTLLRLPNERWRRSTSRPPWGHRFGETSSCKDIVDVGAAVSLGGKLGNDDTVEKSEPPMLFWSTLVTTSYVGLRQWFQLLGAGGLYSLRRIPANRLFYPSTRAAEEATAKSQESFMEEHGGRKHPGLHTMEMLEKLPRSTFAFEPAPVDRYHLRSLDFACLLGHESRMLTADNRGNTVVFDADSSSVLAFPNLISPKRYNAISLSIINNNGSNNNNGLEPPPEDGLYVMTRSPDVHRIKDGCFEVLNYSSSSVDFREMTPHWVSLQPPPFAGCMNAEITSYTVVHGTTIYISCNKPIHSTYAFDTVSHEWRRLGSWTMPFHGRAEYVPELNLWFGLSARHPYSLSAFDLLSDDSSVAAKPPTVHHTWVDLDIPQS
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_12g0001060 | OsNaBo_12g0001060.02 | Chr12 | 745666 | 747219 | - | IsoSeq | ||
| CDS seq | atgctgttttggtcaaccttggtaacgacatcctacgttgggctccgtcagtggtttcagctgttagtgagttctggcgtgtgctgtgtaactgttcagccagtcggtggttggtttttcttttcttgtaacccgtctagggtttttactactact |
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| Protein seq | MLFWSTLVTTSYVGLRQWFQLLVSSGVCCVTVQPVGGWFFFSCNPSRVFTTT |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.527085 | 0.766512 | 0.503421 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0109600 | SBH | 0.549033 | 2.037041 | 1.097040 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g02180 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0109600 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0000840 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0001040 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0001030 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0000860 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0000950 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0011000 | RBH | 0.0247775 | 0.175687 | 0.030964 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0000920 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0012700 | SBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0000850 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0000990 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0000960 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0000970 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0000970 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G000900 | RBH | 0.0 | 0.000000 | 0.144803 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0000950 | SBH | 0.0 | 0.0 | 0.0 |
