Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_10g0006110 | OGI:01056340 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr10:9197091-9199212 | ||||||||
| Gene Symbol | AtpB | ||||||||||
| DNA seq | tcaaattgctttttctcgttctatctcagagtatccattcattcgatactcatccgcttctagttcgactttctgtaatcgaattcgagctttttcgagctgctcaatggttcctctacgcaattcttccgaatttcgaatagtactcaagatcctctgtttcgattatctaataaattttaatgaaagtagattaccttgctattaagtttacaacttttatgatctcttcccgaaccaaacatgaatctttgattcatttggctctcacgctccctttttctttttttgctatggctacttccatatttttttaatgtaatgagcctatcctctacctctctttctgtttatatttcaatataccgaaacccatataagactagataaatataagaggactcttccgcctagaataaaaatctatcgtgggcagcaaagttgttttttatttgtatttgccctttagttaaaatttgcaattcattaagaaaaaactaaatagaaaaatggaaaatgaaaatggatagaattcctacttttttcttcaaatccaaaaactttctccttgtttatacataggtcgtcgattcggcattggataaaaaagggcagggtgccccttctagtaaatagttcaaaccatttatcgatatgagtgttctatatcagataaattctacattagctatttctgtttaaagcatttggtactaatactaatatagttgtagaaagagtaccccttttgcctagacttcaagcagtttagctttaccgtgttaatggtctcatattattggtctatagagaatcaaagttgatttgatttaccaataggtcgcgaaatgctatggttctttCatatgatttctgcatttattcagaagtaattcgtcgagatcgtgcacccttttcttatttattcgaaaaatactaaaaaatattctaaagtgcaGCcggatagatccaatctattcttgaaatagacaactcgcacacactccctttccaaaataaatcaatacaccaacactacagctagatttattagatttgttgctaaaatatcggtataagcacgaaaactcagcggatggccagtgagctaaaaaaacgaaagaatgggtacatttttcatatgctctcctctatagataggacgaacaaagaacaaagtttttcgaacttacttcgctcgcccTttttgatcggtttttttaatgcaaTtttttttaatagaaatagattcaatttagtaatttcttttagattaagtcttagatctcgtttgacctgtgaaagacctcctttgttgaaatgttcccAaaattcctaaaataaaaggaaaaatacTttccactgccctaaacaaagggcgggaagcaagacggcgaacatatcctctaaattgatcatcctcaaatcagctaTtcctggggtggggtattgtctgtccccataaatagaaaactctaggagtaataaattaggagtaaagtattgatataaTtggaattgcagaagcaaataccaattactaaaaaaagaagaaagtatctaatctaaaggactcgtttcttttttaggattaaacaaaagggttcgcaaataaaagcgccagggccacaactagtccataaattgttaaagtccataaaagctagaCtaagcaataaagtaccgcgtattttaccttctgcttctggctgtctcgcaataccttctacagcttgtcctgcagcagtaccttgaccaactccaggcccaatagaagcaagacctacggccaatccagcagcaataacggaagcagcagcaattagtggattcatgatgagttCctcgtgtcaaaaaaaagaaatggttaaggatacaatcaacCAagaaAttcatatttctaagctctattggacagaagtaactaaaaagtacaaattgaaacgataatctgaattctccgaacTgcttcgagatctccTttttagtttctaatcattagAggtttgtgtactcattattctatttctcTttctttccaaccaactgatctttcattccatccttctttcTttcctcttcgatatccTtgagtttctaTtttttcccctatcatctaatt
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| CDS seq | atgaatccactaattgctgctgcttccgttattgctgctggattggccgtaggtcttgcttctattgggcctggagttggtcaaggtactgctgcaggacaagctgtagaaggtattgcgagacagccagaagcagaagagttttctatttatggggacagacaataccccaccccaggaAtagctgatttgaggatgatcaatttagaggatatgttcgccgtcttgcttcccgccctttgtttagggcagtggaaAaggatcttgagtactattcgaaattcggaagaattgcgtagaggaaccattgagcagctcgaaaaagctcgaattcgattacagaaagtcgaactagaagcggatgagtatcgaatgaatggatactctgagatagaacgagaaaaagcaatttga
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| Protein seq | MNPLIAAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEEFSIYGDRQYPTPGIADLRMINLEDMFAVLLPALCLGQWKRILSTIRNSEELRRGTIEQLEKARIRLQKVELEADEYRMNGYSEIEREKAI |
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| Function | ATP synthase subunit b, chloroplastic [UniProtKB/Swiss-Prot:P0C2Z0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_10g0006110 | OsNaBo_10g0006110.01 | Chr10 | 9197091 | 9198925 | - | NAM | ||
| CDS seq | atgaatccactaattgctgctgcttccgttattgctgctggattggccgtaggtcttgcttctattgggcctggagttggtcaaggtactgctgcaggacaagctgtagaaggtattgcgagacagccagaagcagaagagttttctatttatggggacagacaataccccaccccaggaAtagctgatttgaggatgatcaatttagaggatatgttcgccgtcttgcttcccgccctttgtttagggcagtggaaAaggatcttgagtactattcgaaattcggaagaattgcgtagaggaaccattgagcagctcgaaaaagctcgaattcgattacagaaagtcgaactagaagcggatgagtatcgaatgaatggatactctgagatagaacgagaaaaagcaatttga
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| Protein seq | MNPLIAAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEEFSIYGDRQYPTPGIADLRMINLEDMFAVLLPALCLGQWKRILSTIRNSEELRRGTIEQLEKARIRLQKVELEADEYRMNGYSEIEREKAI |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_10g0006110 | OsNaBo_10g0006110.02 | Chr10 | 9198361 | 9199212 | - | IsoSeq | ||
| CDS seq | atgataggggaaaaaAtagaaactcaAggatatcgaagaggaaAgaaagaaggatggaatgaaagatcagttggttggaaagaaAgagaaata |
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| Protein seq | MIGEKIETQGYRRGKKEGWNERSVGWKEREI |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 365.078094 | 161.937363 | 600.134827 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0006060 | RBH | 977.347717 | 246.369232 | 1538.183105 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G017790 | RBH | 286.852173 | 78.991211 | 447.335388 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
