Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_09g0016510 | OGI:09058480 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr09:20451423-20456345 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | caccaccgctcttccgcgcttcgcttctctcgccgtctcgcggctgcgcggcgcggcgctctcatccatcccctcctCccgcTtcccccacccgccgcccgatctcgacggcggatcgccccgggatgggctccgacgaagacgagCggctcgacgacgaggagtactactactactgcagcgacggggagtgtagcggcggcgggagcgggagcgacgaggatgaggagttcgggggccgcgggagcgacgagggctgtgaggCcgacgaggtcgtctccacgcgcgagcaggtgctgtgttttgggatcagaaaccctcgcgtattctgtggtcatttgatagaatttctGggaaacaggtgcaatgcgatggtggtgtgcttaGagtcgcagcgaaATttGttcatggcttctctgcTttacagatagcaaaacgtttcatccttcggggAaaaaaatagcaaaacatttaccaagatctcaatAGattatagatatgatgttttctcttcatAaattgtttcgatagcttggatggttgtttactctacagattgagagtttgagactgctattttccttctctgcAttgtatgtcattaacgtaattgtgttttGgtccttttgttcatgctgccctgcctttctgtttctctattcttaattcttgtatacttggtgtcagaactaactcaaaatctcaaatgggcctcttctgtgttcattttcttatgaacagagatatgttgtgttgaccgaagatgatatacgcgagcgacaagaggAaatgataagccgtgtgtctgcaatattttcagttccaagggaatcagcatgcgtcctccttcgtcactacaaatggtcaGtgccgccgctccagcagctcgtcctttctgAAcacactctactgttttatttccgttgtagtgaatttgagaagcccatctcatgtatctcttgtttacaagatGtactgcaaatgctttgtgtagttatatgtatatgtaatagcattttcttactgctggcctgccacaaaggtaggatgcTtttgagctaaactagaaGatccttttctatgttaacaatgtatcttcattttgttgttcaGgagtattagcaagctaagtgatgactggttcgcagatgaagaaaatgtccgccgttctgttggcttgccatcaaaTGttgttcatgttcctgactgtcctgaggtagaattacattcctaaaaGatAtggagcttcattgggtttttttttatctttgttattttattgtgacattagaatgattgctattgtaactatcacaattgatggatgactttgttgttctcatttcagtagtttgtatttcattcttgtggaaggtctatctgtctctctctctctctctccatcactcatttttacattaTaagttctttgtgacttcaagattttgttattttacttgtaacaTtacgaaTtgattgctattgtaactataACaaattgatagatgactttgttgttctcactttcagtagtttgtagcattcttgttcttAaaagaattctgaaatttatggtgctaaaatgaggtAAattttcagggtatAttagtgctgcagtaaatgatggtccagggtgtttggtgttgcagtgccctgaaccAtcttgtgatgcaatcgttcttgaagatatgattaatagtctgacgaaagatgaggataaagtAaaAGTATGCACGATTTGTATTATGGTCATATATTGGAGTTAACAACAAGGTAATTCTTTAAAGTACTCAGCGCTCATAATGGTTCACATTATCGTTCTCCCAATTATGTTTATTAAACCTTACTGTATTGCCCATCAGATAGTAGTACTATTTACTATTTACTATATAGTTGGTATATACTTGCTTATATTTATGCCAAGTGTCACCCCAAATGGTTTTCAAAAAAACATATTTCTGAAGTAATAAAAATTAATTCCTGCAGATAAAATGGTGTCCAGCTCCTGATTGTACCTGTGCAGTTGAGTTTCTTGGTGATGGTAACTATGATGTCTCATGCAAATGCAAATTCAGTTTTTGCTGGAATGTCGGTATTTCTTTATTTATTTATTTACTTGTATACCTTTCAGATTGATTGTTTGATATTACCAGTTAAATCTTTGGTAAATGCAGTGTGCAGAGGAAGCTCATCGGCCAGTTAGCTGTGACACAGTCTCAAAGTGGATACTAAAGAACAGCGCAGAATCTGAAAACATGAATTGGTTTGTCGCACACATAATTTCCTTTTCATTCTTGTATTTGATAGTATGTCTTGTACTTTATTCTTTCCATCTTGAATATTTCTTGTGTAAAATACTTTTTTTCTTTTTAATTTCCTAAGTTCATAAGGAAAAACTGGAAGCTGTTTCTCAAGTGTTGTTTTCTCCCCCAGGATATTAGCTTATTCTAAGCCCTGTCCGAAATGCAAACGACCTATAGAGAAGAATCAGGGATGCATGCATATGACATGCACTCCTCCTTGTAAATTTGAGTTTTGCTGGTAAGCTTCCCTCTCGGCATATTTGTTTTGATGGTGATTGTGTACATTTTGCATTGAAATTGTTTAtctttggtctgattttccatggttgcaggttatgcctaggtgcatggtcagatcatggagatgggactggtggcttttatgcttgcaatcgttatcaatcagcaaagatgggaggcatggtatatttcatcttggatactgtattgtgcaagaagaatcgtgaTttttaccttgctagaataagcttttCtattGttacctattcaTgtgtttGctctagtcttttAtaCtactttgctgtgtatttaatttatttgttttccttcatgccaatAatctcttgtaatgttttcctcatgtttcagtatgatgaggctgaagcaaggagagagagagctAAaaattcgcttgagagatacatgcattattatgagcgctgggcgtccaatcAaacagtatgtctaggAcccagtcactttacatagtctttatctgattttttatggtattcatgcttctacatgcccttttgattttcatatGgaccatgtaatgtgtatagtaagctcattaggttggagacttttagttttgctgactggaaggatctaatttcatgttgctgctgcaaagtacagcgtctggcactaatgtccttggcAaatcagttgtctacttacttttcattttatatttaccatccaatattatgagtggtaaACacatacacagtgctttattttatatttatctttctcatactttcataacaaTtttccacaatgctgtatatttccattcaattttcgcatacataatgtgaagggtctgccataaatttacattttagctgtacttttatgtatgatacattttctgttttcTtttccctgttggcagtcAaggcagaaagcacaagcagatctgcaaaaagttgaaaatgaagatgtaAGttttacattggaccatgtgtacAgCatttgtGggtcatagcagaagtttgattttaTtaatacttgtagcAaaattcactgttttggcagtccttttatcaGttgtAaatacttttagtttggacttctgtgatGtttcagttttgcgtttgactattttctcatgtgtatagcttacAaagttaagtgatgttgttggtataccagagacccaactaaagttcatacctgaagcttggtcacaggttagatattatAaatcaTtttctattgcccattgactgtttatgtaatttacatgttcattattcgttgtgacagatcaTagaatgcaggcgagtgctgaaatggacatatgcttatgggtactatctacacaacaaagcgAagagtgatttttttgtgtacctccaaggtagtagataatttctgccttgccaagtaggcgcttatgcatacttgacggctgtacatgttttaaaatttataggtgaagctgagtctggtttggagcgtcttcataaatgtgccgagaaggatatgcgtgaatttttacctacagcggattccactcaaccttctctttcattgcaagacttcggtgaatttcgtgtgaagctttctggtctaacaaggtattgcagagatatcttcactcatcatcacttcagtgaatttttgtgaatgtatttgccgttaattttgtaatttacttggatctgaaGggcacacgcttgctccaaccatcactgttatccttgcagtgtcgcttgcttcatgcatgatgcaaatgtatattttccaaatatccAtgaactgctcaatatgtcactatgcagtgccaaatttgcttgatcattttattcactataagacttgcatgtttatgagtatgtacagcaactaagccTttttgagaacatgatctaagctaaatatttcattgcagcgtaacccgcaactacttcgagaaccttgttcaaacactggaagcgggtctgcaggatgtccgcgctacagaccaatcagcttcagtcagtacctccagctccaagaagcctcccaccaacaccaaGgggaagtcagggcggagtaaggtggcgagaacatcgcaggagcgctcaggcgacagatggccatgcgaccgctgcactttcatcaacccgtcctctacgaactcatgcaacatgtgcggcaggaacaagccccgccgcagataggaagattggtcaaaatgcagttgtgcaaaggaacaccTtctcactgggattctggtcgaacAaagtggtgctcatttggcccaacactctggtgctatgaacatgaagcagactctcccagggatctgatgttgctcagaggagatgtaaGaaacgaacaatctcaGgaatgcagcgcaagaggcttggacaaaattaggtag
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| CDS seq | atgggctccgacgaagacgagCggctcgacgacgaggagtactactactactgcagcgacggggagtgtagcggcggcgggagcgggagcgacgaggatgaggagttcgggggccgcgggagcgacgagggctgtgaggCcgacgaggtcgtctccacgcgcgagcagagatatgttgtgttgaccgaagatgatatacgcgagcgacaagaggAaatgataagccgtgtgtctgcaatattttcagttccaagggaatcagcatgcgtcctccttcgtcactacaaatggagtattagcaagctaagtgatgactggttcgcagatgaagaaaatgtccgccgttctgttggcttgccatcaaaTGttgttcatgttcctgactgtcctgagATAAAATGGTGTCCAGCTCCTGATTGTACCTGTGCAGTTGAGTTTCTTGGTGATGGTAACTATGATGTCTCATGCAAATGCAAATTCAGTTTTTGCTGGAATTGTGCAGAGGAAGCTCATCGGCCAGTTAGCTGTGACACAGTCTCAAAGTGGATACTAAAGAACAGCGCAGAATCTGAAAACATGAATTGGATATTAGCTTATTCTAAGCCCTGTCCGAAATGCAAACGACCTATAGAGAAGAATCAGGGATGCATGCATATGACATGCACTCCTCCTTGTAAATTTGAGTTTTGCTGgttatgcctaggtgcatggtcagatcatggagatgggactggtggcttttatgcttgcaatcgttatcaatcagcaaagatgggaggcatgtatgatgaggctgaagcaaggagagagagagctAAaaattcgcttgagagatacatgcattattatgagcgctgggcgtccaatcAaacatcAaggcagaaagcacaagcagatctgcaaaaagttgaaaatgaagatcttacAaagttaagtgatgttgttggtataccagagacccaactaaagttcatacctgaagcttggtcacagatcaTagaatgcaggcgagtgctgaaatggacatatgcttatgggtactatctacacaacaaagcgAagagtgatttttttgtgtacctccaaggtgaagctgagtctggtttggagcgtcttcataaatgtgccgagaaggatatgcgtgaatttttacctacagcggattccactcaaccttctctttcattgcaagacttcggtgaatttcgtgtgaagctttctggtctaacaagcgtaacccgcaactacttcgagaaccttgttcaaacactggaagcgggtctgcaggatgtccgcgctacagaccaatcagcttcagtcagtacctccagctccaagaagcctcccaccaacaccaaGgggaagtcagggcggagtaaggtggcgagaacatcgcaggagcgctcaggcgacagatggccatgcgaccgctgcactttcatcaacccgtcctctacgaactcatgcaacatgtgcggcaggaacaagccccgccgcagatag
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| Protein seq | MGSDEDERLDDEEYYYYCSDGECSGGGSGSDEDEEFGGRGSDEGCEADEVVSTREQRYVVLTEDDIRERQEEMISRVSAIFSVPRESACVLLRHYKWSISKLSDDWFADEENVRRSVGLPSNVVHVPDCPEIKWCPAPDCTCAVEFLGDGNYDVSCKCKFSFCWNCAEEAHRPVSCDTVSKWILKNSAESENMNWILAYSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGAWSDHGDGTGGFYACNRYQSAKMGGMYDEAEARRERAKNSLERYMHYYERWASNQTSRQKAQADLQKVENEDLTKLSDVVGIPETQLKFIPEAWSQIIECRRVLKWTYAYGYYLHNKAKSDFFVYLQGEAESGLERLHKCAEKDMREFLPTADSTQPSLSLQDFGEFRVKLSGLTSVTRNYFENLVQTLEAGLQDVRATDQSASVSTSSSKKPPTNTKGKSGRSKVARTSQERSGDRWPCDRCTFINPSSTNSCNMCGRNKPRRR |
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| Function | Probable E3 ubiquitin-protein ligase ARI8 [UniProtKB/Swiss-Prot:Q8W468] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_09g0016510 | OsNaBo_09g0016510.01 | Chr09 | 20451423 | 20456345 | + | NAM | ||
| CDS seq | atgggctccgacgaagacgagCggctcgacgacgaggagtactactactactgcagcgacggggagtgtagcggcggcgggagcgggagcgacgaggatgaggagttcgggggccgcgggagcgacgagggctgtgaggCcgacgaggtcgtctccacgcgcgagcagagatatgttgtgttgaccgaagatgatatacgcgagcgacaagaggAaatgataagccgtgtgtctgcaatattttcagttccaagggaatcagcatgcgtcctccttcgtcactacaaatggagtattagcaagctaagtgatgactggttcgcagatgaagaaaatgtccgccgttctgttggcttgccatcaaaTGttgttcatgttcctgactgtcctgagATAAAATGGTGTCCAGCTCCTGATTGTACCTGTGCAGTTGAGTTTCTTGGTGATGGTAACTATGATGTCTCATGCAAATGCAAATTCAGTTTTTGCTGGAATTGTGCAGAGGAAGCTCATCGGCCAGTTAGCTGTGACACAGTCTCAAAGTGGATACTAAAGAACAGCGCAGAATCTGAAAACATGAATTGGATATTAGCTTATTCTAAGCCCTGTCCGAAATGCAAACGACCTATAGAGAAGAATCAGGGATGCATGCATATGACATGCACTCCTCCTTGTAAATTTGAGTTTTGCTGgttatgcctaggtgcatggtcagatcatggagatgggactggtggcttttatgcttgcaatcgttatcaatcagcaaagatgggaggcatgtatgatgaggctgaagcaaggagagagagagctAAaaattcgcttgagagatacatgcattattatgagcgctgggcgtccaatcAaacatcAaggcagaaagcacaagcagatctgcaaaaagttgaaaatgaagatcttacAaagttaagtgatgttgttggtataccagagacccaactaaagttcatacctgaagcttggtcacagatcaTagaatgcaggcgagtgctgaaatggacatatgcttatgggtactatctacacaacaaagcgAagagtgatttttttgtgtacctccaaggtgaagctgagtctggtttggagcgtcttcataaatgtgccgagaaggatatgcgtgaatttttacctacagcggattccactcaaccttctctttcattgcaagacttcggtgaatttcgtgtgaagctttctggtctaacaagcgtaacccgcaactacttcgagaaccttgttcaaacactggaagcgggtctgcaggatgtccgcgctacagaccaatcagcttcagtcagtacctccagctccaagaagcctcccaccaacaccaaGgggaagtcagggcggagtaaggtggcgagaacatcgcaggagcgctcaggcgacagatggccatgcgaccgctgcactttcatcaacccgtcctctacgaactcatgcaacatgtgcggcaggaacaagccccgccgcagatag
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| Protein seq | MGSDEDERLDDEEYYYYCSDGECSGGGSGSDEDEEFGGRGSDEGCEADEVVSTREQRYVVLTEDDIRERQEEMISRVSAIFSVPRESACVLLRHYKWSISKLSDDWFADEENVRRSVGLPSNVVHVPDCPEIKWCPAPDCTCAVEFLGDGNYDVSCKCKFSFCWNCAEEAHRPVSCDTVSKWILKNSAESENMNWILAYSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGAWSDHGDGTGGFYACNRYQSAKMGGMYDEAEARRERAKNSLERYMHYYERWASNQTSRQKAQADLQKVENEDLTKLSDVVGIPETQLKFIPEAWSQIIECRRVLKWTYAYGYYLHNKAKSDFFVYLQGEAESGLERLHKCAEKDMREFLPTADSTQPSLSLQDFGEFRVKLSGLTSVTRNYFENLVQTLEAGLQDVRATDQSASVSTSSSKKPPTNTKGKSGRSKVARTSQERSGDRWPCDRCTFINPSSTNSCNMCGRNKPRRR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.134934 | 0.0 | 2.804890 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0513800 | RBH | 1.383984 | 0.992819 | 3.554820 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g33876 | RBH | 0.945471 | 0.671432 | 0.923585 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0513800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0016410 | RBH | 0.166827 | 2.358818 | 2.570493 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0016400 | RBH | 0.259548 | 0.000000 | 3.297464 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0016650 | RBH | 1.248397 | 0.0 | 7.926042 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0016390 | RBH | 0.192617 | 0.021371 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0016520 | RBH | 0.998733 | 0.0 | 1.349353 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0336600 | RBH | 1.321257 | 2.163985 | 4.7091425 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0016390 | RBH | 0.046184 | 0.0 | 0.182284 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0323700 | RBH | 6.22613 | 5.849644 | 2.69864 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0016390 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0016200 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0016300 | RBH | 4.169472 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0016150 | RBH | 0.131975 | 0.0 | 0.109885 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0016280 | RBH | 0.059932 | 0.703890 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G016710 | RBH | 0.497135 | 0.000000 | 0.960938 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0023530 | RBH | 4.694941 | 70.913528 | 35.328163 |
