Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_09g0002970 | OGI:01056340 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr09:5173961-5174815 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctaacaagagtagacatgcaaaattgttgtttgttcctgaagggaaaaccgttcgagctgttcctgaatagcttccttcaaaaggatttccgcttcctcggtgaatgtcttgctagaagatagaatttcttggaattgaggtttggtatcttttaggtgtttacgtagctcatccagacatttctttacctgtccaatttctaaggaatcaagatatcctctcgttccggtataaatagtagctatctgctcttccactgggagagggtttgattgggattgtttaagcaattctcgtaatcgtcgaccccttgccatttgattctgacttgttttatcgagagcagaggcgaattgtgcaaaggcttgtaactctgcgaattgagctaattccaatttagatttgccagctacttgtttcatggctttaatttgagccgcggatcctactctggaaacagaaatacccacattaatagcaggtcgaattccagcattgaatagatctgcggataagaatatttgcccatctgtaatggagattacattagtaggaatataggcggaaacgtctccagattgagtctcaactattggtaaagcggtcatactttcttcccctaaaagagaattgaatttagcggctctttctaaaaggcgtgaatgcaaataaaaaacatcccctgggtaagcttcgcagccggggggtcttcttaatagaagggacatttggcgataagcttgtgcttgtttggagagatcatcataaattattaaagtatgccggtacataaaatactcagccagggccgtataaggagcgaggtattgtaatgtagcaggggaatccgccat
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| CDS seq | atggcggattcccctgctacattacaatacctcgctccttatacggccctggctgagtattttatgtaccggcatactttaataatttatgatgatctctccaaacaagcacaagcttatcgccaaatgtcccttctattaagaagaccccccggctgcgaagcttacccaggggatgttttttatttgcattcacgccttttagaaagagccgctaaattcaattctcttttaggggaagaaagtatgaccgctttaccaatagttgagactcaatctggagacgtttccgcctatattcctactaatgtaatctccattacagatgggcaaatattcttatccgcagatctattcaatgctggaattcgacctgctattaatgtgggtatttctgtttccagagtaggatccgcggctcaaattaaagccatgaaacaagtagctggcaaatctaaattggaattagctcaattcgcagagttacaagcctttgcacaattcgcctctgctctcgataaaacaagtcagaatcaaatggcaaggggtcgacgattacgagaattgcttaaacaatcccaatcaaaccctctcccagtggaagagcagatagctactatttataccggaacgagaggatatcttgattccttagaaattggacaggtaaagaaatgtctggatgagctacgtaaacacctaaaagataccaaacctcaattccaagaaattctatcttctagcaagacattcaccgaggaagcggaaatccttttgaaggaagctattcaggaacagctcgaacggttttcccttcaggaacaaacaacaattttgcatgtctactcttgttag
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| Protein seq | MADSPATLQYLAPYTALAEYFMYRHTLIIYDDLSKQAQAYRQMSLLLRRPPGCEAYPGDVFYLHSRLLERAAKFNSLLGEESMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKSKLELAQFAELQAFAQFASALDKTSQNQMARGRRLRELLKQSQSNPLPVEEQIATIYTGTRGYLDSLEIGQVKKCLDELRKHLKDTKPQFQEILSSSKTFTEEAEILLKEAIQEQLERFSLQEQTTILHVYSC |
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| Function | ATP synthase subunit alpha, chloroplastic [UniProtKB/Swiss-Prot:P0C2Z6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_09g0002970 | OsNaBo_09g0002970.01 | Chr09 | 5173961 | 5174815 | - | NAM | ||
| CDS seq | atggcggattcccctgctacattacaatacctcgctccttatacggccctggctgagtattttatgtaccggcatactttaataatttatgatgatctctccaaacaagcacaagcttatcgccaaatgtcccttctattaagaagaccccccggctgcgaagcttacccaggggatgttttttatttgcattcacgccttttagaaagagccgctaaattcaattctcttttaggggaagaaagtatgaccgctttaccaatagttgagactcaatctggagacgtttccgcctatattcctactaatgtaatctccattacagatgggcaaatattcttatccgcagatctattcaatgctggaattcgacctgctattaatgtgggtatttctgtttccagagtaggatccgcggctcaaattaaagccatgaaacaagtagctggcaaatctaaattggaattagctcaattcgcagagttacaagcctttgcacaattcgcctctgctctcgataaaacaagtcagaatcaaatggcaaggggtcgacgattacgagaattgcttaaacaatcccaatcaaaccctctcccagtggaagagcagatagctactatttataccggaacgagaggatatcttgattccttagaaattggacaggtaaagaaatgtctggatgagctacgtaaacacctaaaagataccaaacctcaattccaagaaattctatcttctagcaagacattcaccgaggaagcggaaatccttttgaaggaagctattcaggaacagctcgaacggttttcccttcaggaacaaacaacaattttgcatgtctactcttgttag
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| Protein seq | MADSPATLQYLAPYTALAEYFMYRHTLIIYDDLSKQAQAYRQMSLLLRRPPGCEAYPGDVFYLHSRLLERAAKFNSLLGEESMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKSKLELAQFAELQAFAQFASALDKTSQNQMARGRRLRELLKQSQSNPLPVEEQIATIYTGTRGYLDSLEIGQVKKCLDELRKHLKDTKPQFQEILSSSKTFTEEAEILLKEAIQEQLERFSLQEQTTILHVYSC
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 12.524303 | 96.066742 | 35.189079 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g08880 | RBH | 0.191185 | 0.098478 | 0.084177 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0009090 | SBH | 400.428223 | 85.896706 | 644.869629 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0018220 | SBH | 726.383789 | 85.930038 | 597.339661 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0002930 | RBH | 3.433300 | 13.383157 | 14.417121 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0013891 | SBH | 280.727295 | 11.331708 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0017970 | SBH | 1652.038818 | 120.820091 | 1315.958740 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0300300 | SBH | 4539.07959 | 422.9936675 | 612.403595 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0021390 | SBH | 42.286999 | 1.425343 | 17.880873 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0078000 | SBH | 0 | 0 | 0.0982695 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0017990 | SBH | 747.249451 | 6.285062 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0004792 | SBH | 565.966614 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0018190 | SBH | 4714.895508 | 360.585022 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0004670 | RBH | 31.388939 | 0.0 | 12.428169 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0002760 | SBH | 276.863922 | 61.298630 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G003080 | SBH | 16.912891 | 356.410309 | 209.190506 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0004650 | RBH | 2354.627930 | 984.945374 | 3754.520264 |
