Basic Info |
Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
OsNaBo_09g0001260 | OGI:02042770 | 10/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr09:2082737-2083653 | ||||||||
Gene Symbol | - | ||||||||||
DNA seq | tcataaactaataaacagagaaggagttccacttccatacctagctaaatatgtcagggaggtcaagtagacaagaattaagcaaattccaccataactactgaagatagatctgcaatggaaaaggtagaaaattggttatgccagggtgaaataagcacacatgagtagtaacatctcagaagggatgggacaacaaccaattggaaaaatattccttttacaaagacagtaagaaccatcatctatcatttctaccccattagtaaaattaaaaatcttagcacaagactgaacataaaacagaacaaataacaatgaactctgctccatcaccacatctgcctggggaataaagttaagataagggggaagaaacattaggagggaaggggaagaggaagcagggaatggggggacaagcttgaccttgtgttgttgattgcagtggacaaagaaacaccgtcttgagctttaagaagggacgacggtgcccagaacctcaagtgaagcagatctggtgagcacagatgcaggtggctccctaggagtgatgaggtcgtgttcttggtgatgaatcgcagccaaatgcgacctccctgcaggaaccaccttgggggcgtggagatggtggattcatgtgggatgggccacatggatgaaccaccgggggcaatacatcgtggatgatgtgggggagatggaggaggggacaggaggaggtggtggcgctgcttggagaggaagcggcggcggcgctgctggttggggaggagatagtcggaggcggaggcggtgctgctacctgctaggtcttggagtggggattttttcaggtttctgagagagagtgtgtgagagagaagagaggtctgtttgtttggagttttggtgctgaaaattttgttccgcgccat
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CDS seq | atggcgcggaacaaaattttcagcaccaaaactccaaacaaacagacctctcttctctctcacacactctctctcagaaacctgaaaaaatccccactccaagacctagcaggtagcagcaccgcctccgcctccgactatctcctccccaaccagcagcgccgccgccgcttcctctccaagcagcgccaccacctcctcctgtcccctcctccatctcccccacatcatccacgatgtattgcccccggtggttcatccatgtggcccatcccacatgaatccaccatctccacgcccccaaggtggttcctgcagggaggtcgcatttggctgcgattcatcaccaagaacacgacctcatcactcctagggagccacctgcatctgtgctcaccagatctgcttcacttgaggttctgggcaccgtcgtcccttcttaaagctcaagacggtgtttctttgtccactgcaatcaacaacacaagatctatcttcagtagttatggtggaatttgcttaattcttgtctacttgacctccctgacatatttagctaggtatggaagtggaactccttctctgtttattagtttatga
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Protein seq | MARNKIFSTKTPNKQTSLLSHTLSLRNLKKSPLQDLAGSSTASASDYLLPNQQRRRRFLSKQRHHLLLSPPPSPPHHPRCIAPGGSSMWPIPHESTISTPPRWFLQGGRIWLRFITKNTTSSLLGSHLHLCSPDLLHLRFWAPSSLLKAQDGVSLSTAINNTRSIFSSYGGICLILVYLTSLTYLARYGSGTPSLFISL |
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Function | - |
Transcripts
Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
OsNaBo_09g0001260 | OsNaBo_09g0001260.01 | Chr09 | 2082737 | 2083653 | - | NAM | ||
CDS seq | atggcgcggaacaaaattttcagcaccaaaactccaaacaaacagacctctcttctctctcacacactctctctcagaaacctgaaaaaatccccactccaagacctagcaggtagcagcaccgcctccgcctccgactatctcctccccaaccagcagcgccgccgccgcttcctctccaagcagcgccaccacctcctcctgtcccctcctccatctcccccacatcatccacgatgtattgcccccggtggttcatccatgtggcccatcccacatgaatccaccatctccacgcccccaaggtggttcctgcagggaggtcgcatttggctgcgattcatcaccaagaacacgacctcatcactcctagggagccacctgcatctgtgctcaccagatctgcttcacttgaggttctgggcaccgtcgtcccttcttaaagctcaagacggtgtttctttgtccactgcaatcaacaacacaagatctatcttcagtagttatggtggaatttgcttaattcttgtctacttgacctccctgacatatttagctaggtatggaagtggaactccttctctgtttattagtttatga
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Protein seq | MARNKIFSTKTPNKQTSLLSHTLSLRNLKKSPLQDLAGSSTASASDYLLPNQQRRRRFLSKQRHHLLLSPPPSPPHHPRCIAPGGSSMWPIPHESTISTPPRWFLQGGRIWLRFITKNTTSSLLGSHLHLCSPDLLHLRFWAPSSLLKAQDGVSLSTAINNTRSIFSSYGGICLILVYLTSLTYLARYGSGTPSLFISL |
Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
Leaf | Root | Panicle | |
FPKM | 0.0 | 0.0 | 0.0 |
Homologues
Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
---|---|---|---|---|---|
Leaf | Root | Panicle | |||
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0001300 | RBH | 0.255952 | 0.305741 | 1.282039 |
Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0001240 | RBH | 0.000000 | 0.000000 | None |
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0001360 | RBH | 14.673465 | 22.786509 | None |
LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0001250 | RBH | 0.000000 | 0.0 | 1.526829 |
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0001260 | RBH | 0.101306 | 0.000000 | None |
N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G001310 | RBH | 1.066807 | 4.789138 | 2.793622 |
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |