Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_01g0036620 | OGI:01056340 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr01:34833575-34835020 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggtgcctgacatcgacgtctcagtgccagtacgCctagttgccgtcgaatctCctttccttcttgtctctcttgtcatcctcactatgtaacgtagtccctccgtctaaaaaaatccaacctaaACcatatttagtttgtgtgctaatcttttttaagtatacggacacatagttGaagtattaaacgtagactaataacaaaacAaattacagattccgcctgtaaactgcgagatgaatttattaaGgctaattaatccgtcattagcaaatgtttactgcagcatcacattgtcaaatcatgacgtaattaggctcaaagattcatctcgcaatttacatgcaaactgtgcaattgggttttttcatccatattttatgTttcatgcatgtgtccaaacatttgatgtgacggaaTtttttttggaagtttgaagagagctaaacactactctagtattggatgggacgttttctagtataacgaatctggacaggagtatgtcttgattcgttgtactagaaaATatcacacttaatattaggttgagTtttttttaaatggagggagtaagtagatttatcatttacccagccgttcgaggtagtggtggaaatgctccaactcatcaaaaagtagaagatgataatgcaaaATatatccaagagtatctttcacatgaaatacatctctttgtacacctagagagagacAaaaaaaagtgcacaactatgcttatatatatatatatattatatatatatAtatatatatatagagtatctttcacatgaaatacatctctttgtacacctagagagagactcaatctggagacgtttccgcctatattcctactaatgtaatctccattacagatggacaaatattcttatccgcAgatctattcaatgccggaattcggcctgctattaatgtgggtatttccgtttccagagtaggatccgcggctcaaattaaagccatgaaacaagtagctggcaaatcaaaattggaattagctcaattcgcggagttacaagcctttgcacaattcgcctctgctctcgataaaacaagtcagaatcaattggcaaggggccgacgattacgagaattgcttaaacaatcccaagcaaatcctcttccagtgaaagagcagatagctactatttatatcggaacaagaggatatcttgattccttttatatatatatatatatatatatatatatatatatatatatatatatatatatatatatagtctcgatcgcactccaaaatccgcatgcaattttaacttttcactttaacaaccatactAaatatatgttcctaagttatgtttatattgtagccaaaataacaaaTtttggcaagatgataatattgctaaaattttggcaagatttgttatatgtttactaaatttgacaac
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| CDS seq | atggtgcctgacatcgacgtctcagtgccaagagagactcaatctggagacgtttccgcctatattcctactaatgtaatctccattacagatggacaaatattcttatccgcAgatctattcaatgccggaattcggcctgctattaatgtgggtatttccgtttccagagtaggatccgcggctcaaattaaagccatgaaacaagtagctggcaaatcaaaattggaattagctcaattcgcggagttacaagcctttgcacaattcgcctctgctctcgataaaacaagtcagaatcaattggcaaggggccgacgattacgagaattgcttaaacaatcccaagcaaatcctcttccagtgaaagagcagatagctactatttatatcggaacaagaggatatcttgattccttttatatatatatatatatatatatatatatatatatatatatatatatatatatatatatagtctcgatcgcactccaaaatccgcatgcaattttaacttttcactttaacaaccatactAaatatatgttcctaagttatgtttatattgtagccaaaataacaaaTtttggcaagatgataatattgctaaaattttggcaagatttgttatatgtttactaa
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| Protein seq | MVPDIDVSVPRETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKSKLELAQFAELQAFAQFASALDKTSQNQLARGRRLRELLKQSQANPLPVKEQIATIYIGTRGYLDSFYIYIYIYIYIYIYIYIYIYIVSIALQNPHAILTFHFNNHTKYMFLSYVYIVAKITNFGKMIILLKFWQDLLYVY |
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| Function | ATP synthase subunit alpha, chloroplastic [UniProtKB/Swiss-Prot:P0C2Z6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_01g0036620 | OsNaBo_01g0036620.01 | Chr01 | 34833575 | 34835020 | + | NAM | ||
| CDS seq | atggtgcctgacatcgacgtctcagtgccaagagagactcaatctggagacgtttccgcctatattcctactaatgtaatctccattacagatggacaaatattcttatccgcAgatctattcaatgccggaattcggcctgctattaatgtgggtatttccgtttccagagtaggatccgcggctcaaattaaagccatgaaacaagtagctggcaaatcaaaattggaattagctcaattcgcggagttacaagcctttgcacaattcgcctctgctctcgataaaacaagtcagaatcaattggcaaggggccgacgattacgagaattgcttaaacaatcccaagcaaatcctcttccagtgaaagagcagatagctactatttatatcggaacaagaggatatcttgattccttttatatatatatatatatatatatatatatatatatatatatatatatatatatatatatagtctcgatcgcactccaaaatccgcatgcaattttaacttttcactttaacaaccatactAaatatatgttcctaagttatgtttatattgtagccaaaataacaaaTtttggcaagatgataatattgctaaaattttggcaagatttgttatatgtttactaa
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| Protein seq | MVPDIDVSVPRETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKSKLELAQFAELQAFAQFASALDKTSQNQLARGRRLRELLKQSQANPLPVKEQIATIYIGTRGYLDSFYIYIYIYIYIYIYIYIYIYIVSIALQNPHAILTFHFNNHTKYMFLSYVYIVAKITNFGKMIILLKFWQDLLYVY
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.0 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0036370 | RBH | 28.288549 | 6.650251 | 24.289192 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0567100 | RBH | 16.2033875 | 1.946434 | 2.6475345 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G036910 | RBH | 24.298254 | 10.598877 | 29.336964 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
