Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_01g0020780 | OGI:01064860 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr01:21757078-21759399 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | acctgttgacgttgcattatagaccgtattgttactcttgctaccatcaggatagatctgtccccttcctcggtttcccccCAcatatatgggatattttaagaaatgaacgtctttcttCatagcaGggtcgggggaaagaatgggaaagatgatttcactatatttcttaccgggaaccgggcctatcacaagaaTatttttttattgggacgataactctgaaaagagagatttcctatcttttctttcaactcaGgagaaatacagtcgggcggcgctaattcgaatccctCgggcaaaataagaacaGcacccacattcaaccctccctttttCccattagcaagaacttgtttcagttgcatatcataaggaattcgaagaactgcttcaaatacagtatcgggaagcactgcttggggaacttcaatatccacaggcTtattcgctaaatggcaattggcacatacaattcgtccagttgcttctcgtgggttttcataaccttgctgcgcaaaaatgggatatgcaTttgaaaTagatgtccgagttattacgtatatcatgatcgatacagaaatcgatcgagtcatctgttcctttacccaagAaaaagtatttctattttccatgtccaatcacagatcccggaatttctacaataaattagataggtagctaagctaatctagttccctatacacgaatctgTtgtcattctactgcaacagttgtactggaatgatgaataccttgagcaggtagaaatagAaaaaaagaattttgctaaaatggaaaaaggcTttctttctaaaggaaaaaggatgctaattttgattaatatcaggagatcaaatgagtttatgcttcactaattgaatgataaatgactacaagcgaaggagataggcgGtttaaacaaaaaaagacccaaaatttcaaacatgtatctagaatcaCaggaaaactacAaacaaaaATagtgaaaattagctcgttaggaacccatccaagatcgttatagaCccaacgaataagtagttcccaaccgcgggtggagtgaaatccaacaaaaaaatcagtaactaaaagaataaaaaaaGCTtttactgagtcatttaagttatagaagaattcctgaacccaagaattcAaaataacaagttcctctttacccagAaaaaaagaaccacttagaatagccaaacagattataTttgtcgagaaaTgcaaaatgatatggagatgaccctcattatctattttggccaattgtattatttccttgcgtattcctataggggggttttgtacatgtgtattcggtttctcttttatcatttcgtccaagataaaaaggtcttctaattccatgaatctttctagaactcttttctcttgaatagcagttaAGagagtttgggattgcctggtattccaccaattcttaatccaaagttccagacatttgttaaaagagaaagagactccccaaggcaaaagtacgataaatacaagatataggaaagaaggcaatgctttcttttttttcatttttgatctgtaaattgagttgttaatgaatccgctttattcgctgactctatatgatatttctttttCtttgaaggaaaaattctataacaaggtttgagaccttgtatctattcctcttttttctatactagtagaatttcattgcattgagttctttcttaGatctagatggagtggaatagagaaatagaaaaaagtcctttcggatgaaaatggaagaatattacgccatatatccCActtggacaaattagaagcaattttctctTAtcttcatttgttccttcctttagataaatactcaaaattcccttacaataatgcaatttcgaagggaccttttccctcgtgttgagaaaacttttcttcttccaattcttcttcattcaatttcaaaaattcaattggtactcaaaatacttccattggtatgcgcaagaaataagccaattcggCagctttttgttcaaTttctcgtggagtaaaaaacttctcatcagtacgagtcaagggaatgGccccctggccccggatttccatataaaggatacgacgagGaaaaagacCttctttaacctgaattctaattgattggatatcccgcataaggaatcgaaggaagacGcgaCgTtttattccagggaatccccaacgaaaaatgcacactacTccctcttttctatcgaatcggtcataaccactgcctacattccacaaaatagtgcaccacaagtaagcgctaatgaataggcctgcgattcc
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| CDS seq | atgcgggatatccaatcaattagaattcaggttaaagaaGgtctttttCctcgtcgtatcctttatatggaaatccggggccagggggCcattcccttgactcgtactgatgagaagttttttactccacgagaaAttgaacaaaaagctGccgaattggcttatttcttgcgcataccaatggaaaattggtggaataccaggcaatcccaaactctCTtaactgctattcaagagaaaagagttctagaaagattcatggaattagaagacctttttatcttggacgaaatgataaaagagaaaccgaatacacatgtacaaaacccccctataggaatacgcaaggaaataatacaattggccaaaatagataatgaggttactgatttttttgttggatttcactccacccgcggttgggaactacttattcgttggGtctataacgatcttggatgggttcctaacgagctaattttcactATttttcaaggttatgaaaacccacgagaagcaactggacgaattgtatgtgccaattgccatttagcgaataAgcctgtggatattgaagttccccaagcagtgcttcccgatactgtatttgaagcagttcttcgaattccttatgatatgcaactgaaacaagttcttgctaatggGaaaaagggagggttgaatgtgggtgCtgttcttattttgcccGagggattcgaattagcgccgcccgactgtatttctcCtgagttgaaagaaaagataggaaatctctcttttcagagcccggttcccggtaagaaatatagtgaaatcatctttcccattctttcccccgaccCtgctatGaagaaagacgttcatttcttaaaatatcccatatatgTGgggggaaaccgaggaaggggacagatctatcctgatggtagcaagagtaacaatacggtctataatgcaacgtcaacaggt
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| Protein seq | MRDIQSIRIQVKEGLFPRRILYMEIRGQGAIPLTRTDEKFFTPREIEQKAAELAYFLRIPMENWWNTRQSQTLLTAIQEKRVLERFMELEDLFILDEMIKEKPNTHVQNPPIGIRKEIIQLAKIDNEVTDFFVGFHSTRGWELLIRWVYNDLGWVPNELIFTIFQGYENPREATGRIVCANCHLANKPVDIEVPQAVLPDTVFEAVLRIPYDMQLKQVLANGKKGGLNVGAVLILPEGFELAPPDCISPELKEKIGNLSFQSPVPGKKYSEIIFPILSPDPAMKKDVHFLKYPIYVGGNRGRGQIYPDGSKSNNTVYNATSTG |
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| Function | Cytochrome f [UniProtKB/Swiss-Prot:P0C389] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_01g0020780 | OsNaBo_01g0020780.01 | Chr01 | 21757078 | 21759399 | - | NAM | ||
| CDS seq | atgcgggatatccaatcaattagaattcaggttaaagaaGgtctttttCctcgtcgtatcctttatatggaaatccggggccagggggCcattcccttgactcgtactgatgagaagttttttactccacgagaaAttgaacaaaaagctGccgaattggcttatttcttgcgcataccaatggaaaattggtggaataccaggcaatcccaaactctCTtaactgctattcaagagaaaagagttctagaaagattcatggaattagaagacctttttatcttggacgaaatgataaaagagaaaccgaatacacatgtacaaaacccccctataggaatacgcaaggaaataatacaattggccaaaatagataatgaggttactgatttttttgttggatttcactccacccgcggttgggaactacttattcgttggGtctataacgatcttggatgggttcctaacgagctaattttcactATttttcaaggttatgaaaacccacgagaagcaactggacgaattgtatgtgccaattgccatttagcgaataAgcctgtggatattgaagttccccaagcagtgcttcccgatactgtatttgaagcagttcttcgaattccttatgatatgcaactgaaacaagttcttgctaatggGaaaaagggagggttgaatgtgggtgCtgttcttattttgcccGagggattcgaattagcgccgcccgactgtatttctcCtgagttgaaagaaaagataggaaatctctcttttcagagcccggttcccggtaagaaatatagtgaaatcatctttcccattctttcccccgaccCtgctatGaagaaagacgttcatttcttaaaatatcccatatatgTGgggggaaaccgaggaaggggacagatctatcctgatggtagcaagagtaacaatacggtctataatgcaacgtcaacaggt
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| Protein seq | MRDIQSIRIQVKEGLFPRRILYMEIRGQGAIPLTRTDEKFFTPREIEQKAAELAYFLRIPMENWWNTRQSQTLLTAIQEKRVLERFMELEDLFILDEMIKEKPNTHVQNPPIGIRKEIIQLAKIDNEVTDFFVGFHSTRGWELLIRWVYNDLGWVPNELIFTIFQGYENPREATGRIVCANCHLANKPVDIEVPQAVLPDTVFEAVLRIPYDMQLKQVLANGKKGGLNVGAVLILPEGFELAPPDCISPELKEKIGNLSFQSPVPGKKYSEIIFPILSPDPAMKKDVHFLKYPIYVGGNRGRGQIYPDGSKSNNTVYNATSTG
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_01g0020780 | OsNaBo_01g0020780.02 | Chr01 | 21757287 | 21758939 | - | IsoSeq | ||
| CDS seq | Atgcatatcccatttttgcgcagcaaggttatgaaaacccacgagaagcaactggacgaattgtatgtgccaattgcc |
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| Protein seq | MHIPFLRSKVMKTHEKQLDELYVPIA |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 479.683258 | 191.294098 | 783.891907 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0020970 | RBH | 30.018166 | 5.700123 | 35.255821 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0020580 | RBH | 10.737679 | 0.555120 | 14.576605 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0020910 | RBH | 34.042988 | 2.715027 | 36.821037 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0020300 | RBH | 9.521712 | 0.094712 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0020190 | RBH | 1915.102539 | 132.159256 | 1512.630249 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0347400 | RBH | 2614.951172 | 277.126984 | 260.906357 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0020140 | RBH | 126.792618 | 4.171010 | 60.184303 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0342600 | RBH | 1588.097168 | 116.3419 | 142.560745 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0020150 | RBH | 44.064213 | 0.873456 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0020060 | RBH | 148.625443 | 36.743984 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0020310 | RBH | 1476.451904 | 104.557892 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0020220 | RBH | 8.882308 | 0.000000 | 1.493820 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0020100 | RBH | 263.378326 | 42.602730 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G021050 | RBH | 98.717003 | 13.849771 | 124.464493 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
