Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsN22_09G002970 | OGI:09013680 | 15/16 | N22 | OsN22RS2 | Gramene(+IsoSeq) | Chr09:5156181-5158865 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATCATAGTTCAGCTTTAAAATGGTGGTGTCCCTGTGTTAGTAAGTGGTTGAAATAGCTCATGGGAGTGTCTGCCCCATTCGATAATGGCATTTATGATCTAGTGGAGTGAGTGATTGTGTGGTGTTCAGTCTAAGGCTTTTTGAAAAGCGGATTTCTCCCTTCTCTCATCCATCGTCTTTGTTAAAGTATGGAATTCTCACCCAGAGCTGCGGAACTCACGACTCTATTAGAAAGTAGAATGACCAACTTTTACACGAATTTTCAAGTGGATGAGATCGGTCGAGTGGTCTCAGTTGGAGATGGGATTGCACGTGTTTATGGATTGAACGAGATTCAAGCTGGAGAAATGGTGGAATTTGCCAGCGGTGTGAAAGGAATAGCCTTGAATCTTGAGAATGAGAATGTAGGTATTGTTGTCTTTGGTAGTGATACCGCTATTAAAGAAGGAGATCTTGTCAAGCGCACTGGATCTATTGTGGATGTTCCTGCGGGAAAGGCCATGTTAGGCCGTGTGGTCGACGCCTTGGGAGTACCTATTGATGGAAAAGGGGCTCTAAGCGATCACGAACGAAGACGTGTCGAAGTGAAAGCCCCAGGGATTATTGAACGTAAATCTGTGCACGAACCCATGCAAACAGGCTTAAAAGCAGTGGATAGCCTGGTTCCTATAGGCCGTGGTCAACGAGAACTTATAATCGGGGACAGACAAACTGGAAAAACAGCAATAGCTATCGATACTATATTAAACCAAAAGCAAATGAACTCAAGGGGCACAAATGAGAGTGAGACATTGTATTGTGTCTATGTTGCGATTGGACAAAAACGCTCGACTGTGGCACAATTAGTTCAAATTCTTTCAGAAGCGAATGCTTTGGAATATTCCATTCTTGTAGCAGCCACCGCTTCGGATCCTGCTCCTCTGCAATTTCTGGCCCCATATTCAGGGTGTGCCATGGGGGAATATTTCCGCGATAATGGAATGCACGCATTAATTATATATGATGATCTAAGTAAACAGGCGGTGGCATATCGACAAATGTCATTATTGTTACGCCGACCACCAGGCCGTGAGGCTTTCCCAGGGGATGTTTTCTATTTACATTCCCGTCTCTTAGAAAGAGCCGCTAAACGATCGGACCAGACAGGTGCAGGTAGCTTGACTGCGTTACCCGTGATTGAAACACAAGCTGGAGACGTATCGGCCTATATCCCCACCAATGTGATCTCCATTACAGATGGACAAATCTGTTTGGAAACAGAGCTCTTTTATCGCGGAATTAGACCTGCTATTAACGTTGGCTTATCCGTCAGTCGCGTCGGGTCTGCCGCTCAGTTGAAAGCTATGAAACAAGTCTGCGGTAGTTCAAAACTGGAATTGGCACAATATCGCGAAGTGGCCGCCTTCGCTCAATTTGGGTCAGACCTTGATGCTGCGACTCAGGCATTACTCAATAGAGGTGCAAGGCTTACAGAAGTGCCCAAACAACCACAATATGAACCACTTCCAATTGAAAAACAAATTGTTGTGATTTATGCTGCTGTCAACGGCTTCTGTGATCGAATGCCACTAGACAGAATTTCTCAATATGAAAAAGCCATTCTAAGTACTATTAATCCAGAATTACTAAAATCCTTCAACGAAAAAGGGGGATTAACTAACGAAAGAAAGATTGAACCTGATGCTTCTTTAAAACAAACTGCGAAGGAGATTAATTAGATAGACCTTTTTATTTTTCGTCATTCGATCACGAAAACAGGGATTCTGGAACGGCCAAGAATCCCAGCGGTTGTTCGGGTCGAAAAACCGAGAACAAGACATGCCACAAAGTGGCAGATGAAGGCAGGGGGGAGAGCCTAGTCCTCAACCTCTTCTTCCCCAAAAGGTAGTTATGAACGTGCCAAACTTATTGGATTTATTCTTGGAATGCTCATAACCACCTTTACTCTTTTTTTCATTCTTTACTCAGAGGAAGCCATGCCGTTTGGAGAAGAGCACCAAGTGGGGGGAGTGTGGAGTCCCCGAAAGAGGAGCTTTCTAAAGGCAAGAGAAAAGCTCCGATGGAGCCCTTGGAGCTACAGGGACCACCAACCCTTCGCAGCTTGGACGATTTGATTCTTGTGCCACTCAGCCCTGAGGAGGGCGCCTGCTCGACCCAGTCAGGTACTACTCCGCCGCCGGCCCCGAGTAACTCTGCGGGGGTCGGTGCAGCCCTTTCTTCTATTCCGGAGTGCATAAACAAGGATCCTCAAAAAGCGAAATCATTTCGTTAATGGCATTTCAGAAATGAGTCATAGGCGCCTGTACAATGACAGAATAGAGAGTCCTTTTTTTCCAGAATGAATCATTCTATTCAAATCTCACAAGTTCTCTTTACGCGTCTTCTAGGGGCATTGTTGAACGCAATCTGCAGGAACAAGAAATGATTCTTTCTTATTTTGAAACAGAATTCAAAATAAAGGAGGATTTAATTCGGTTGCTTTATGAAGGCCGACGCCGTGCCGATAGATACGTTATACACGAAACGAAAATAGCCAGTACGGTGGACGCGTTCCTTTCCAAAAAGGGATTATCAGGAGCTCCCAGTGCCGAGGGGGTAGTTCAACTCAAGAAGGAGCGGTACTTTCTGGAAAATCCCGGGAGGAATGGAGCTCCTTTGTATAGGGAACTCGAAGAACTCTTCTAA
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| CDS seq | ATGACCAACTTTTACACGAATTTTCAAGTGGATGAGATCGGTCGAGTGGTCTCAGTTGGAGATGGGATTGCACGTGTTTATGGATTGAACGAGATTCAAGCTGGAGAAATGGTGGAATTTGCCAGCGGTGTGAAAGGAATAGCCTTGAATCTTGAGAATGAGAATGTAGGTATTGTTGTCTTTGGTAGTGATACCGCTATTAAAGAAGGAGATCTTGTCAAGCGCACTGGATCTATTGTGGATGTTCCTGCGGGAAAGGCCATGTTAGGCCGTGTGGTCGACGCCTTGGGAGTACCTATTGATGGAAAAGGGGCTCTAAGCGATCACGAACGAAGACGTGTCGAAGTGAAAGCCCCAGGGATTATTGAACGTAAATCTGTGCACGAACCCATGCAAACAGGCTTAAAAGCAGTGGATAGCCTGGTTCCTATAGGCCGTGGTCAACGAGAACTTATAATCGGGGACAGACAAACTGGAAAAACAGCAATAGCTATCGATACTATATTAAACCAAAAGCAAATGAACTCAAGGGGCACAAATGAGAGTGAGACATTGTATTGTGTCTATGTTGCGATTGGACAAAAACGCTCGACTGTGGCACAATTAGTTCAAATTCTTTCAGAAGCGAATGCTTTGGAATATTCCATTCTTGTAGCAGCCACCGCTTCGGATCCTGCTCCTCTGCAATTTCTGGCCCCATATTCAGGGTGTGCCATGGGGGAATATTTCCGCGATAATGGAATGCACGCATTAATTATATATGATGATCTAAGTAAACAGGCGGTGGCATATCGACAAATGTCATTATTGTTACGCCGACCACCAGGCCGTGAGGCTTTCCCAGGGGATGTTTTCTATTTACATTCCCGTCTCTTAGAAAGAGCCGCTAAACGATCGGACCAGACAGGTGCAGGTAGCTTGACTGCGTTACCCGTGATTGAAACACAAGCTGGAGACGTATCGGCCTATATCCCCACCAATGTGATCTCCATTACAGATGGACAAATCTGTTTGGAAACAGAGCTCTTTTATCGCGGAATTAGACCTGCTATTAACGTTGGCTTATCCGTCAGTCGCGTCGGGTCTGCCGCTCAGTTGAAAGCTATGAAACAAGTCTGCGGTAGTTCAAAACTGGAATTGGCACAATATCGCGAAGTGGCCGCCTTCGCTCAATTTGGGTCAGACCTTGATGCTGCGACTCAGGCATTACTCAATAGAGGTGCAAGGCTTACAGAAGTGCCCAAACAACCACAATATGAACCACTTCCAATTGAAAAACAAATTGTTGTGATTTATGCTGCTGTCAACGGCTTCTGTGATCGAATGCCACTAGACAGAATTTCTCAATATGAAAAAGCCATTCTAAGAAGCCATGCCGTTTGGAGAAGAGCACCAAGTGGGGGGAGTGTGGAGTCCCCGAAAGAGGAGCTTTCTAAAGGCAAGAGAAAAGCTCCGATGGAGCCCTTGGAGCTACAGGGACCACCAACCCTTCGCAGCTTGGACGATTTGATTCTTGTGCCACTCAGCCCTGAGGAGGGCGCCTGCTCGACCCAGTCAGAATTCAAAATAAAGGAGGATTTAATTCGGTTGCTTTATGAAGGCCGACGCCGTGCCGATAGATACGTTATACACGAAACGAAAATAGCCAGTACGGTGGACGCGTTCCTTTCCAAAAAGGGATTATCAGGAGCTCCCAGTGCCGAGGGGGTAGTTCAACTCAAGAAGGAGCGGTACTTTCTGGAAAATCCCGGGAGGAATGGAGCTCCTTTGTATAGGGAACTCGAAGAACTCTTCTAA
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| Protein seq | MTNFYTNFQVDEIGRVVSVGDGIARVYGLNEIQAGEMVEFASGVKGIALNLENENVGIVVFGSDTAIKEGDLVKRTGSIVDVPAGKAMLGRVVDALGVPIDGKGALSDHERRRVEVKAPGIIERKSVHEPMQTGLKAVDSLVPIGRGQRELIIGDRQTGKTAIAIDTILNQKQMNSRGTNESETLYCVYVAIGQKRSTVAQLVQILSEANALEYSILVAATASDPAPLQFLAPYSGCAMGEYFRDNGMHALIIYDDLSKQAVAYRQMSLLLRRPPGREAFPGDVFYLHSRLLERAAKRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSAAQLKAMKQVCGSSKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVPKQPQYEPLPIEKQIVVIYAAVNGFCDRMPLDRISQYEKAILRSHAVWRRAPSGGSVESPKEELSKGKRKAPMEPLELQGPPTLRSLDDLILVPLSPEEGACSTQSEFKIKEDLIRLLYEGRRRADRYVIHETKIASTVDAFLSKKGLSGAPSAEGVVQLKKERYFLENPGRNGAPLYRELEELF |
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| Function | ATP synthase subunit alpha, mitochondrial [UniProtKB/Swiss-Prot:P0C522] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsN22_09G002970 | OsN22_09G002970_01 | Chr09 | 5156420 | 5158865 | + | NAM | ||
| CDS seq | ATGACCAACTTTTACACGAATTTTCAAGTGGATGAGATCGGTCGAGTGGTCTCAGTTGGAGATGGGATTGCACGTGTTTATGGATTGAACGAGATTCAAGCTGGAGAAATGGTGGAATTTGCCAGCGGTGTGAAAGGAATAGCCTTGAATCTTGAGAATGAGAATGTAGGTATTGTTGTCTTTGGTAGTGATACCGCTATTAAAGAAGGAGATCTTGTCAAGCGCACTGGATCTATTGTGGATGTTCCTGCGGGAAAGGCCATGTTAGGCCGTGTGGTCGACGCCTTGGGAGTACCTATTGATGGAAAAGGGGCTCTAAGCGATCACGAACGAAGACGTGTCGAAGTGAAAGCCCCAGGGATTATTGAACGTAAATCTGTGCACGAACCCATGCAAACAGGCTTAAAAGCAGTGGATAGCCTGGTTCCTATAGGCCGTGGTCAACGAGAACTTATAATCGGGGACAGACAAACTGGAAAAACAGCAATAGCTATCGATACTATATTAAACCAAAAGCAAATGAACTCAAGGGGCACAAATGAGAGTGAGACATTGTATTGTGTCTATGTTGCGATTGGACAAAAACGCTCGACTGTGGCACAATTAGTTCAAATTCTTTCAGAAGCGAATGCTTTGGAATATTCCATTCTTGTAGCAGCCACCGCTTCGGATCCTGCTCCTCTGCAATTTCTGGCCCCATATTCAGGGTGTGCCATGGGGGAATATTTCCGCGATAATGGAATGCACGCATTAATTATATATGATGATCTAAGTAAACAGGCGGTGGCATATCGACAAATGTCATTATTGTTACGCCGACCACCAGGCCGTGAGGCTTTCCCAGGGGATGTTTTCTATTTACATTCCCGTCTCTTAGAAAGAGCCGCTAAACGATCGGACCAGACAGGTGCAGGTAGCTTGACTGCGTTACCCGTGATTGAAACACAAGCTGGAGACGTATCGGCCTATATCCCCACCAATGTGATCTCCATTACAGATGGACAAATCTGTTTGGAAACAGAGCTCTTTTATCGCGGAATTAGACCTGCTATTAACGTTGGCTTATCCGTCAGTCGCGTCGGGTCTGCCGCTCAGTTGAAAGCTATGAAACAAGTCTGCGGTAGTTCAAAACTGGAATTGGCACAATATCGCGAAGTGGCCGCCTTCGCTCAATTTGGGTCAGACCTTGATGCTGCGACTCAGGCATTACTCAATAGAGGTGCAAGGCTTACAGAAGTGCCCAAACAACCACAATATGAACCACTTCCAATTGAAAAACAAATTGTTGTGATTTATGCTGCTGTCAACGGCTTCTGTGATCGAATGCCACTAGACAGAATTTCTCAATATGAAAAAGCCATTCTAAGAAGCCATGCCGTTTGGAGAAGAGCACCAAGTGGGGGGAGTGTGGAGTCCCCGAAAGAGGAGCTTTCTAAAGGCAAGAGAAAAGCTCCGATGGAGCCCTTGGAGCTACAGGGACCACCAACCCTTCGCAGCTTGGACGATTTGATTCTTGTGCCACTCAGCCCTGAGGAGGGCGCCTGCTCGACCCAGTCAGAATTCAAAATAAAGGAGGATTTAATTCGGTTGCTTTATGAAGGCCGACGCCGTGCCGATAGATACGTTATACACGAAACGAAAATAGCCAGTACGGTGGACGCGTTCCTTTCCAAAAAGGGATTATCAGGAGCTCCCAGTGCCGAGGGGGTAGTTCAACTCAAGAAGGAGCGGTACTTTCTGGAAAATCCCGGGAGGAATGGAGCTCCTTTGTATAGGGAACTCGAAGAACTCTTCTAA
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| Protein seq | MTNFYTNFQVDEIGRVVSVGDGIARVYGLNEIQAGEMVEFASGVKGIALNLENENVGIVVFGSDTAIKEGDLVKRTGSIVDVPAGKAMLGRVVDALGVPIDGKGALSDHERRRVEVKAPGIIERKSVHEPMQTGLKAVDSLVPIGRGQRELIIGDRQTGKTAIAIDTILNQKQMNSRGTNESETLYCVYVAIGQKRSTVAQLVQILSEANALEYSILVAATASDPAPLQFLAPYSGCAMGEYFRDNGMHALIIYDDLSKQAVAYRQMSLLLRRPPGREAFPGDVFYLHSRLLERAAKRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSAAQLKAMKQVCGSSKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVPKQPQYEPLPIEKQIVVIYAAVNGFCDRMPLDRISQYEKAILRSHAVWRRAPSGGSVESPKEELSKGKRKAPMEPLELQGPPTLRSLDDLILVPLSPEEGACSTQSEFKIKEDLIRLLYEGRRRADRYVIHETKIASTVDAFLSKKGLSGAPSAEGVVQLKKERYFLENPGRNGAPLYRELEELF
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsN22_09G002970 | OsN22_09G002970_02 | Chr09 | 5156181 | 5157692 | + | IsoSeq | ||
| CDS seq | ATGGACAAATCTGTTTGGAAACAGAGCTCTTTTATCGCGGAATTAGACCTGCTATTAACGTTGGCTTATCCGTCAGTCGCGTCGGGTCTGCCGCTC |
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| Protein seq | MDKSVWKQSSFIAELDLLLTLAYPSVASGLPL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 93.655075 | 1866.563477 | 1092.219482 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g08910 | RBH | 7.517565 | 6.988683 | 29.931499 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0002960 | SBH | 333.322998 | 8333.093750 | 4205.996094 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0008340 | RBH | 294.795654 | 2244.665771 | 1643.344727 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0081000 | RBH | 155.295937 | 407.406738 | 444.287155 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G002920 | RBH | 2.061122 | 14.456946 | 7.602306 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0003000 | SBH | 145.978699 | 4060.014893 | 2921.864502 |
