Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsN22_04G007052 | OGI:04043860 | 16/16 | N22 | OsN22RS2 | Gramene(+IsoSeq) | Chr04:13047039-13050136 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CCACACTTCCTTTTGATTTTTTCTTTTTTTTCATCCTACCTTTCCATTACGAAATTTCTTTCTTTTCGAAGATTAAGAAAGAGCCGAAATAGCTTGAAATAAATAATAATTGTTCCGATGGAACCTTCTACATGGTATAAGCATAACCTTAATGAATTAACTAAACTTCTTTTTAAATTAAAATAAAAATAGAAAATCTAACCTCTTAGCGTTCTAAGGTCAAAAATCTAGTTTAAAGTAAAAAATCTGCTTTATGTATCCTTAAATCATATAAATGGGGTAAATGGTGATTCTGATGTCTCATAGAAATTGTTTGTTACGTCAGAATCAGAAGAAACTAATTCTGTATGGAGAAACAAAATATCTCTCATTTCCGACGCAAATATTTTTTTTTTCAATTTCGAAATAAAGGTTCTTGTCTTGTGGGTAACGGTGCACAAATTTTTGGAATCCGGTACCAACAGGTATAATCCCCCCCAGAACTACGTTTTCTTTCAGGCCTTTCAACCAATCAATACGACCTCGTAAGGCAGCTTTTGCTAAAACTCGAGCAGTTTCTTGAAAACTTGCTTCAGATATGAAACTTTGGGTATTCAGGGAAACCCTTGTTATTCCCAATAAGATTGCCCGATAATAGATCGATTCATCCAAAGCCCGCCCTGCTCGCTCTGCTCGCAATAGTCCAATTAATTCCCCAGGTGAAAAAACATTAGACATTCCATCTTCGGAAACCCGCACTTTTGATGTTACTTGGCGTATAATAATCTCTATATGTCTATTATGGATCTGTACCCCTTGGGATCGATAAACCTTTTGGATCTTATTAACCAAAGAGATACGACTTTGGGCTATGGTTAACTCAGCTCCAATCAAGAATCCCCAAGGACCCCCAAGAATTCTTGGTATACGCTCATTCCAATCCTCAATTCACCTTTCGAGATTCGGCGATAGTGAATCAATTGAACGCGCTTCGAAGATTTGTTCTACTTTTGGAAGACCTTGCGTTATGTCACTAGATCTCGCTTTTTCATATATAAACGTAACTAACTTATCCCCTTTGTAAAGGATTTCTCCATAATGACCATGAACAGTTGCTCCTGTAGTGGCCAAATAAGGCTTAGCTGCTCTTATAACAAAGGAATCTATATTTACAATGAAAATTTGACCTGATTTTTTTATGTGCGATTTAAATAGACATACATTTTTGCAAATAAATTGTCCAAGGTGAATTTTTGCTGATGTCTCTTCCCAAGAATCATGAGGGAGAAAGTGTCAATTTAACTGGAATGGATCCAACATGATGTTACTATCGAAATTTGAAGTCCTTTGATTTTCATTTATTAAAGAGTGTTTAAGTCCTTGAAGTACTTTGAAGTTTTGTTTCAAATTGTCAAGGAGCAAATGCTTTTTTAACAAGATCTGATTATACGTTAGTAAATAGTAAGATGAAGAAAAATTCGATATACTAGGTGCAATAGTACCTAAGAGTCCCGAAAAATTTCGAAAGAGCCCCAAAAATTTTGGAATAGGAATTCTAGGATTCGATTCTTTTACCCCATTGGGATTTTTTGAATTCTTAAAAAAACCAATTCGAGAACAGTTGGATGCCGACAAAACCATCAAAGATTGGTATTCTTTATTTCGATTCAACAAGGTACCAATAGCTTCTTGATGTTGGCTAAGTGATTGAATCTTCGCCTTGGAATAAAAGGAACTGGTATTGGTGCGATCTAACCTATTATGGAGAATCAGTCCTGCACTTCTGCTATCATACCTTTTTCGTGTATACGAAATAGTGGATTTGATTAACCCAATTCTTAGGAAATCGCGAATCAGACCATTTGCTCTTATCTCAACAAGGGAAGCGCGAGCCTCCTCTTTTTCTTCTTGTTCCCAATTCAATACTAAGCAAGTTCGAACGAATTGACTATTCGTATGATAAATTCTTTGAGTTAACTTGCTATTTTCATGAGAAATAAAATTGACAAGTCGAAGTTGGAGATTACCCTCTTCCTGCAAGAGATCCTGTGGGAAAAGTGTTGCTAAATTTCTCCCTTCGTTCATTTCATACGCGACTGCAGGTCGAACCAAAACAAAATACTTTTCCTTGCTCTTGAGAATTTTTTTCCACTGAACATAGACCCAATTTTCCCTTTTTTTTGATTCCTTCGAATCTTTTTTTTCTCTTTCTAGTGGTATCAAACTGCCACCTAATATCTTATCCGCCTCTTCAGGAAAATGAATATCTCCAGAAAAGATTTTTAGTTCCGTATGGCTTTTTTTTCTCTTCACTCGAACCAATCCACCCAGCCGACTTCTTGTATTTTTTGTGAGTTGTGTATCCACTCCAATAATACTATTGTCAAGTACCTTTAGGGATGAGGATCTCGTCAAGATATGCAGTTCTTGGAGAATGAAAAAAAACCGATCTACTTCTTTTTGGTATTTTAGACTAAATTCTTTTGTTCCTCGATGCTCAATCAAAACCCCCTTTTTTAAGACGGAATCTTCCTCCGGGTTCCCATATTCGTCCTCAGAGTCTTCCTCTGAGTCTTCCTCTAAAGTCCCATGTTCGTCCTCTAAGTCTTCCTCTAAAGTGCCATATTTATCCTCTCGGGGCCTATATTTGTTCTCTGGACTCCCATATTCGTCCTCGGATTCCTCCTCTCGAGTTCTATATTCGTCCTCTAGGATTCCATATTCATCTTCTAGGGTTTCATATTCATTCTCTGGGATCCCATATTCATCTTCTAGGGTTTCATACTCCTCCTCTCGAGTCCTATATTCGTCTTCTAGGGTTTTACATTCTTCCTCTCGGGTCCTATAGTCGTTTTCTGGGCTCCCGTATTCGTTCTCTGAGTCTTTCTCTCGAGTCCTATATTCGTCCTCTAGGGTCCTATATCTAAATTTAACAATTCCTGAACCCTTTTTATCTTTTTTGTGTCGTGGGTCGTCAAAATAAGCAACTATAGTATTTCTACGTAAAACACCCATAAAGGGTATTTCAATCGAATCCCAAAACAGGATATTGGTTCTTTCTCTTGTTCTTGATGATACTGTAATGGAATGGCGAACCTATTTCTTCGCTTTTTCGCTAA
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| CDS seq | ATGGGTGTTTTACGTAGAAATACTATAGTTGCTTATTTTGACGACCCACGACACAAAAAAGATAAAAAGGGTTCAGGAATTGTTAAATTTAGATATAGGACCCTAGAGGACGAATATAGGACTCGAGAGAAAGACTCAGAGAACGAATACGGGAGCCCAGAAAACGACTATAGGACCCGAGAGGAAGAATGTAAAACCCTAGAAGACGAATATAGGACTCGAGAGGAGGAGTATGAAACCCTAGAAGATGAATATGGGATCCCAGAGAATGAATATGAAACCCTAGAAGATGAATATGGAATCCTAGAGGACGAATATAGAACTCGAGAGGAGGAATCCGAGGACGAATATGGGAGTCCAGAGAACAAATATAGGCCCCGAGAGGATAAATATGGCACTTTAGAGGAAGACTTAGAGGACGAACATGGGACTTTAGAGGAAGACTCAGAGGAAGACTCTGAGGACGAATATGGGAACCCGGAGGAAGATTCCGTCTTAAAAAAGGGGGTTTTGATTGAGCATCGAGGAACAAAAGAATTTAGTCTAAAATACCAAAAAGAAGTAGATCGGTTTTTTTTCATTCTCCAAGAACTGCATATCTTGACGAGATCCTCATCCCTAAAGGTACTTGACAATAGTATTATTGGAGTGGATACACAACTCACAAAAAATACAAGAAGTCGGCTGGGTGGATTGGTTCGAGTGAAGAGAAAAAAAAGCCATACGGAACTAAAAATCTTTTCTGGAGATATTCATTTTCCTGAAGAGGCGGATAAGATATTAGGTGGCAGTTTGATACCACTAGAAAGAGAAAAAAAAGATTCGAAGGAATCAAAAAAAAGGGAAAATTGGGTCTATGTTCAGTGGAAAAAAATTCTCAAGAGCAAGGAAAAGTATTTTGTTTTGGTTCGACCTGCAGTCGCGTATGAAATGAACGAAGGGAGAAATTTAGCAACACTTTTCCCACAGGATCTCTTGCAGGAAGAGGGTAATCTCCAACTTCGACTTGTCAATTTTATTTCTCATGAAAATAGCAAGTTAACTCAAAGAATTTATCATACGAATAGTCAATTCGTTCGAACTTGCTTAGTATTGAATTGGGAACAAGAAGAAAAAGAGGAGGCTCGCGCTTCCCTTGTTGAGATAAGAGCAAATGGTCTGATTCGCGATTTCCTAAGAATTGGGTTAATCAAATCCACTATTTCGTATACACGAAAAAGGTATGATAGCAGAAGTGCAGGACTGATTCTCCATAATAGGTTAGATCGCACCAATACCAGTTCCTTTTATTCCAAGGCGAAGATTCAATCACTTAGCCAACATCAAGAAGCTATTGGTACCTTGTTGAATCGAAATAAAGAATACCAATCTTTGATGGTTTTGTCGGCATCCAACTGTTCTCGAATTGGTTTTTTTAAGAATTCAAAAAATCCCAATGGGGTAAAAGAATCGAATCCTAGAATTCCTATTCCAAAATTTTTGGGGCTCTTTCGAAATTTTTCGGGACTCTTAGGTACTATTGCACCTAGTATATCGAATTTTTCTTCATCTTACTATTTACTAACGTATAATCAGATCTTGTTAAAAAAGCATTTGCTCCTTGACAATTTGAAACAAAACTTCAAAGTACTTCAAGGACTTAAACACTCTTTAATAAATGAAAATCAAAGGACTTCAAATTTCGATAGTAACATCATGTTGGATCCATTCCAGTTA
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| Protein seq | MGVLRRNTIVAYFDDPRHKKDKKGSGIVKFRYRTLEDEYRTREKDSENEYGSPENDYRTREEECKTLEDEYRTREEEYETLEDEYGIPENEYETLEDEYGILEDEYRTREEESEDEYGSPENKYRPREDKYGTLEEDLEDEHGTLEEDSEEDSEDEYGNPEEDSVLKKGVLIEHRGTKEFSLKYQKEVDRFFFILQELHILTRSSSLKVLDNSIIGVDTQLTKNTRSRLGGLVRVKRKKSHTELKIFSGDIHFPEEADKILGGSLIPLEREKKDSKESKKRENWVYVQWKKILKSKEKYFVLVRPAVAYEMNEGRNLATLFPQDLLQEEGNLQLRLVNFISHENSKLTQRIYHTNSQFVRTCLVLNWEQEEKEEARASLVEIRANGLIRDFLRIGLIKSTISYTRKRYDSRSAGLILHNRLDRTNTSSFYSKAKIQSLSQHQEAIGTLLNRNKEYQSLMVLSASNCSRIGFFKNSKNPNGVKESNPRIPIPKFLGLFRNFSGLLGTIAPSISNFSSSYYLLTYNQILLKKHLLLDNLKQNFKVLQGLKHSLINENQRTSNFDSNIMLDPFQL |
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| Function | DNA-directed RNA polymerase subunit beta'' [UniProtKB/Swiss-Prot:P0C508] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsN22_04G007052 | OsN22_04G007052_01 | Chr04 | 13047039 | 13047172 | - | IsoSeq | ||
| CDS seq | CATGTAGAAGGTTCCATCGGAACAATTATTATTTATTTCAAGCTATTTCGGCTCTTTCTTAATCTTCGAAAAGAAAGAAATTTCGTAATGGAA |
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| Protein seq | HVEGSIGTIIIYFKLFRLFLNLRKERNFVME |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsN22_04G007052 | OsN22_04G007052_02 | Chr04 | 13047070 | 13050136 | - | IsoSeq | ||
| CDS seq | ATGGGTGTTTTACGTAGAAATACTATAGTTGCTTATTTTGACGACCCACGACACAAAAAAGATAAAAAGGGTTCAGGAATTGTTAAATTTAGATATAGGACCCTAGAGGACGAATATAGGACTCGAGAGAAAGACTCAGAGAACGAATACGGGAGCCCAGAAAACGACTATAGGACCCGAGAGGAAGAATGTAAAACCCTAGAAGACGAATATAGGACTCGAGAGGAGGAGTATGAAACCCTAGAAGATGAATATGGGATCCCAGAGAATGAATATGAAACCCTAGAAGATGAATATGGAATCCTAGAGGACGAATATAGAACTCGAGAGGAGGAATCCGAGGACGAATATGGGAGTCCAGAGAACAAATATAGGCCCCGAGAGGATAAATATGGCACTTTAGAGGAAGACTTAGAGGACGAACATGGGACTTTAGAGGAAGACTCAGAGGAAGACTCTGAGGACGAATATGGGAACCCGGAGGAAGATTCCGTCTTAAAAAAGGGGGTTTTGATTGAGCATCGAGGAACAAAAGAATTTAGTCTAAAATACCAAAAAGAAGTAGATCGGTTTTTTTTCATTCTCCAAGAACTGCATATCTTGACGAGATCCTCATCCCTAAAGGTACTTGACAATAGTATTATTGGAGTGGATACACAACTCACAAAAAATACAAGAAGTCGGCTGGGTGGATTGGTTCGAGTGAAGAGAAAAAAAAGCCATACGGAACTAAAAATCTTTTCTGGAGATATTCATTTTCCTGAAGAGGCGGATAAGATATTAGGTGGCAGTTTGATACCACTAGAAAGAGAAAAAAAAGATTCGAAGGAATCAAAAAAAAGGGAAAATTGGGTCTATGTTCAGTGGAAAAAAATTCTCAAGAGCAAGGAAAAGTATTTTGTTTTGGTTCGACCTGCAGTCGCGTATGAAATGAACGAAGGGAGAAATTTAGCAACACTTTTCCCACAGGATCTCTTGCAGGAAGAGGGTAATCTCCAACTTCGACTTGTCAATTTTATTTCTCATGAAAATAGCAAGTTAACTCAAAGAATTTATCATACGAATAGTCAATTCGTTCGAACTTGCTTAGTATTGAATTGGGAACAAGAAGAAAAAGAGGAGGCTCGCGCTTCCCTTGTTGAGATAAGAGCAAATGGTCTGATTCGCGATTTCCTAAGAATTGGGTTAATCAAATCCACTATTTCGTATACACGAAAAAGGTATGATAGCAGAAGTGCAGGACTGATTCTCCATAATAGGTTAGATCGCACCAATACCAGTTCCTTTTATTCCAAGGCGAAGATTCAATCACTTAGCCAACATCAAGAAGCTATTGGTACCTTGTTGAATCGAAATAAAGAATACCAATCTTTGATGGTTTTGTCGGCATCCAACTGTTCTCGAATTGGTTTTTTTAAGAATTCAAAAAATCCCAATGGGGTAAAAGAATCGAATCCTAGAATTCCTATTCCAAAATTTTTGGGGCTCTTTCGAAATTTTTCGGGACTCTTAGGTACTATTGCACCTAGTATATCGAATTTTTCTTCATCTTACTATTTACTAACGTATAATCAGATCTTGTTAAAAAAGCATTTGCTCCTTGACAATTTGAAACAAAACTTCAAAGTACTTCAAGGACTTAAACACTCTTTAATAAATGAAAATCAAAGGACTTCAAATTTCGATAGTAACATCATGTTGGATCCATTCCAGTTA
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| Protein seq | MGVLRRNTIVAYFDDPRHKKDKKGSGIVKFRYRTLEDEYRTREKDSENEYGSPENDYRTREEECKTLEDEYRTREEEYETLEDEYGIPENEYETLEDEYGILEDEYRTREEESEDEYGSPENKYRPREDKYGTLEEDLEDEHGTLEEDSEEDSEDEYGNPEEDSVLKKGVLIEHRGTKEFSLKYQKEVDRFFFILQELHILTRSSSLKVLDNSIIGVDTQLTKNTRSRLGGLVRVKRKKSHTELKIFSGDIHFPEEADKILGGSLIPLEREKKDSKESKKRENWVYVQWKKILKSKEKYFVLVRPAVAYEMNEGRNLATLFPQDLLQEEGNLQLRLVNFISHENSKLTQRIYHTNSQFVRTCLVLNWEQEEKEEARASLVEIRANGLIRDFLRIGLIKSTISYTRKRYDSRSAGLILHNRLDRTNTSSFYSKAKIQSLSQHQEAIGTLLNRNKEYQSLMVLSASNCSRIGFFKNSKNPNGVKESNPRIPIPKFLGLFRNFSGLLGTIAPSISNFSSSYYLLTYNQILLKKHLLLDNLKQNFKVLQGLKHSLINENQRTSNFDSNIMLDPFQL
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsN22_04G007052 | OsN22_04G007052_03 | Chr04 | 13049228 | 13049397 | - | IsoSeq | ||
| CDS seq | GTATTATTGGAGTGGATACACAACTCACAAAAAATACAAGAAGTCGGCTGGGTGGATTGGTTC |
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| Protein seq | VLLEWIHNSQKIQEVGWVDWF |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.503239 | 4.869543 | 7.874896 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g24339AA | RBH | 30.964777 | 28.905397 | 20.179388 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0005530 | SBH | 30.798918 | 35.496479 | 87.726944 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0015390 | SBH | 5.522130 | 0.791962 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0215400 | RBH | 133.02441 | 85.9730605 | 70.882473 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0010140 | RBH | 19.993303 | 3.172808 | 14.216101 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0217600 | RBH | 54.0491695 | 22.280471 | 16.042816 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0006870 | SBH | 1.969238 | 1.685488 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0007160 | SBH | 13.801538 | 57.014614 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0007250 | SBH | 239.870590 | 232.471237 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0007070 | SBH | 0.492714 | 0.127231 | 0.719051 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0007370 | RBH | 0.497383 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G007060 | RBH | 0.711099 | 1.003298 | 2.325844 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0007140 | SBH | 18.133957 | 88.606613 | 51.332848 |
