Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsN22_01G036910 | OGI:01056340 | 16/16 | N22 | OsN22RS2 | Gramene(+IsoSeq) | Chr01:34035863-34037041 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGTGCCTGACATCGACGTCTCAGTGCCAGTACGCCTAGTTGCCGTCGAATCTCCTTTCCTTCTTGTCTCTCTTGTCATCCTCACTATGTAACGTAGTCCCTCCGTCTAAAAAAATCCAACCTAAACCATATTTAGTTTGTGTGCTAATCTTTTTTAAGTATACGGACACATAGTTGAAGTATTAAACGTAGACTAATAACAAAACAAATTACAGATTCCGCCTGTAAACTGCGAGATGAATTTATTAAGGCTAATTAATCCGTCATTAGCAAATGTTTACTGCAGCATCACATTGTCAAATCATGACGTAATTAGGCTCAAAGATTCATCTCGCAATTTACATGCAAACTGTGCAATTGGGTTTTTTCATCCATATTTTATGTTTCATGCATGTGTCCAAACATTTGATGTGACGGAATTTTTTTTGGAAGTTTGAAGAGAGCTAAACACTACTCTAGTATTGGATGGGACGTTTTCTAGTATAACGAATCTGGACAGGAGTATGTCTTGATTCGTTGTACTAGAAAATATCACACTTAATATTAGGTTGAGTTTTTTTTAAATGGAGGGAGTAAGTAGATTTATCATTTACCCAGCCGTTCGAGGTAGTGGTGGAAATGCTCCAACTCATCAAAAAGTAGAAGATGATAATGCAAAATATATCCAAGAGTATCTTTCACATGAAATACATCTCTTTGTACACCTAGAGAGAGACAAAAAAAAGTGCACAACTATGCTTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAGAGTATCTTTCACATGAAATACATCTCTTTGTACACCTAGAGAGAGACTCAATCTGGAGACGTTTCCGCCTATATTCCTACTAATGTAATCTCCATTACAGATGGACAAATATTCTTATCCGCAGATCTATTCAATGCCGGAATTCGGCCTGCTATTAATGTGGGTATTTCCGTTTCCAGAGTAGGATCCGCGGCTCAAATTAAAGCCATGAAACAAGTAGCTGGCAAATCAAAATTGGAATTAGCTCAATTCGCGGAGTTACAAGCCTTTGCACAATTCGCCTCTGCTCTCGATAAAACAAGTCAGAATCAATTGGCAAGGGGCCGACGATTACGAGAATTGCTTAAACAATCCCAAGCAAATCCTCTTCCA
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| CDS seq | ATGGTGCCTGACATCGACGTCTCAGTGCCAAGAGAGACTCAATCTGGAGACGTTTCCGCCTATATTCCTACTAATGTAATCTCCATTACAGATGGACAAATATTCTTATCCGCAGATCTATTCAATGCCGGAATTCGGCCTGCTATTAATGTGGGTATTTCCGTTTCCAGAGTAGGATCCGCGGCTCAAATTAAAGCCATGAAACAAGTAGCTGGCAAATCAAAATTGGAATTAGCTCAATTCGCGGAGTTACAAGCCTTTGCACAATTCGCCTCTGCTCTCGATAAAACAAGTCAGAATCAATTGGCAAGGGGCCGACGATTACGAGAATTGCTTAAACAATCCCAAGCAAATCCTCTTCCA |
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| Protein seq | MVPDIDVSVPRETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKSKLELAQFAELQAFAQFASALDKTSQNQLARGRRLRELLKQSQANPLP |
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| Function | ATP synthase subunit alpha, chloroplastic [UniProtKB/Swiss-Prot:A1EA05] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsN22_01G036910 | OsN22_01G036910_01 | Chr01 | 34035863 | 34037041 | + | NAM | ||
| CDS seq | ATGGTGCCTGACATCGACGTCTCAGTGCCAAGAGAGACTCAATCTGGAGACGTTTCCGCCTATATTCCTACTAATGTAATCTCCATTACAGATGGACAAATATTCTTATCCGCAGATCTATTCAATGCCGGAATTCGGCCTGCTATTAATGTGGGTATTTCCGTTTCCAGAGTAGGATCCGCGGCTCAAATTAAAGCCATGAAACAAGTAGCTGGCAAATCAAAATTGGAATTAGCTCAATTCGCGGAGTTACAAGCCTTTGCACAATTCGCCTCTGCTCTCGATAAAACAAGTCAGAATCAATTGGCAAGGGGCCGACGATTACGAGAATTGCTTAAACAATCCCAAGCAAATCCTCTTCCA
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| Protein seq | MVPDIDVSVPRETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKSKLELAQFAELQAFAQFASALDKTSQNQLARGRRLRELLKQSQANPLP |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 24.298254 | 10.598877 | 29.336964 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g16740 | SBH | 366.193787 | 344.205444 | 44.800987 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0009090 | SBH | 400.428223 | 85.896706 | 644.869629 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0018220 | SBH | 726.383789 | 85.930038 | 597.339661 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0005430 | RBH | 1382.364014 | 209.973801 | 1308.764648 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0030580 | SBH | 98.227249 | 4.531226 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0036370 | RBH | 28.288549 | 6.650251 | 24.289192 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0567100 | RBH | 16.2033875 | 1.946434 | 2.6475345 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0029970 | SBH | 159.341278 | 7.673171 | 86.401794 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0017990 | SBH | 747.249451 | 6.285062 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0017940 | SBH | 218.670197 | 62.714031 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0018190 | SBH | 4714.895508 | 360.585022 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0004670 | SBH | 31.388939 | 0.0 | 12.428169 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0017850 | SBH | 436.983917 | 80.464249 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G002920 | SBH | 2.061122 | 14.456946 | 7.602306 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0036620 | RBH | 0.000000 | 0.0 | 0.000000 |
