Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsMH63_06G0218000 OGI:06037620 | 3/16 Minghui 63 | MH63RS3 | HZAU Chr06:13026921-13029762
Gene Symbol -
DNA seq

ATGCCCGGTATTCCTAGGGAGGTGATTGAGCACTCCTTACATGTCAAAGAAGATGCCAAGCCTATCAAGCAACGACTCCGCCGATTTGCGCAAGACAGGAAAGATGCGATCAAGGAGGAATTAACCAAGCTGTTAGCAGCAGGCTTCATCAAAGAAGTCCTTCATCCCGACTGGCTGGCGAACCCGGTTCTAGTTCGGAAGAAAACAGGGCAATGGCGCATGTGTGTTGATTATACCGACCTCAACAAATCCTGCCCTAAAGATCCTTTTGGGTTGCCTCGCATTGACCAGGTGGTTGACTCGACCGCCGGCTGCGAGCTTCTCAGTTTTTTGGACTGCTACTCGGGGTATCATCAGATCCGACTAAAGGAATTCGACTGCTTGAAGACTTCATTTATCACGCCCTTTGGAGCGTACTGCTACATCACCATGCCATTCGGATTGAAGAACGCAGGAGCAACTTATCAACGCATGATCCAGAGATGTTTCTCAACACAGATTGGTCGCAACGTCGAAGCCTATGTGGATGATGTAGTCGTCAAGACTAAGCAAAAGGATGATTTGATTTCGGATCTGGAAGAAACCTTCGCGAGCATCCGTGCTTTCAGGATGAAATTAAACCCTGAAAAGTGCACCTTCGGAGTACCGTCAGGGAAGCTGCTTGGTTTTATGGTGTCTCATAGGGGCATCCAAGCCAACCCGGAGAAAGTTACCGCTATCCTCAACATGAAACCGCCAAGTACCCAGAAAGATGTTCAAAAGCTGACTGGATGCATGGCGGCGCTTAGCCGATTCGTTTCAAGACTCGGCGAGCGGGGGATGCCCTTCTTCAAGCTACTGAAGAAAACAGATGATTTCCAGTGGGGACCCGAAGCACAGAAGGCCTTCGAAGATTTCAAAAAACTCCTCACTGAGCCACCAGTCTTAGCCTCACCGCACCCGCAGGAGCCGTTGCTGCTGTATGTATCAGCCACCTCCCAGGTTGTGAGCACAGTCTTGGTTGTTGAGCGCGAGGAAGAAGGCCATGTCCAGAAAGTTCAGCGACCCATCTATTTTGTCAGCGAGGTCCTAGCCGACTCCAAAACGAGGTACCCTCAGGTTCAGAAGCTGTTATATGGTATTTTAATCACTACCAGGAAGCTATCTCATTACTTTCAAAGTCACTCGGTGACGGTGGTCACATCGTTTCCACTCGGCGATATATTGCACAACCGCGAAGCAAACGGACGGATTGCGAAGTGGGCCTTGGAGTTGATGTCTTTGGACATATCATTCAAGCCCCGAATTTCAATCAAATCCCAAGCATTAGCTGATTTCGTCGCCGAATGGACCGAGTGCCAAGAGGATACCCCCGCGGAGAAGATAGAGCACTGGACCATGCATTTTGACGGATCAAAACGACTTTCGGGCACTGGAGCAGGAGTGGTTTTAATTTCCCCAACTGGAGAAAGATTAAGCTATGTGCTTTGGATACACTTTTCGGCGTCCCATAACGTCGCCGAGTATGAGGCACTTCTTCATGGACTGCGGATTGCAATTTCCCTAGGGATAAAGCGTCTAATAGTTCGGGGCGATTCACAGCTGGTCGTCAACCAAGTTATGAAAGAGTGGTCCTGCCTTGACGACAATATGATGGCATATCGACAAGAGGTACGCAAATTGGAAGACAAGTTCGATGGACTCGAGCTCAGTCACGTTCTTCGACACAATAATGAAGCCGCCGACAGACTTGCCAACTTTGGATCCAAGCGCGAGGTGGCGCCCTCTGATGTTTTCGTCGAACACCTTTATGTGCCGACAGTACCTCACAAAGATACTACTCAAGTTGCGGGCACTCAAGACGTTGCTATGATTGAAGTCGACTGGCGAGAGCCCTTCATACAATTTTTAACTTCTCAAGAACTCCCTCAAGACAAAAATGAAGCCGAGCGGATTTCACGGCGGAGCAAACTTTATGTTATCCATGAAGCCGAGTTATACAAGAAAAGTCCTTCAGGAATTCTGCAACGCTGCGTATCTTTAGAGGAAGGGAGACAATTGCTGAAAGACATACATTCTGGGATATGTGGGAACCATGCTGCTGCACGCACCATTGTCGGCAAAGCTTACCGGCAGGGTTTTTTCTGGCCTACTGCAGTGTCTGATGCCGACAAGATTGTGCGCACATGCGAAGGTTGCCAATTTTTCGCCAGACAAATTCATCTACCAGCTCAAGAGTTACAGACTATCCCGCTGTCTTGGCCGTTTGCGGTTTGGGGGCTCGACATGGTTGGCCCGTTCAAAAAGGCAGTCGGCGGATACACGCACCTCTTTGTCGCCATTGACAAATTCTCCAAGTGGATTGAAGCCAAACCGGTTGTCACAATCACGGTAGATAATGCTCGAGACTTTTTCATCAATATTGTGCATAGATTTGGGGTGCCCAATCGGATCATCACTGATAATGGCACACAATTCACCGGCGGAGTTTTTAAAGACTTTTGTGAGGACTTTGGAATTAAGATTTGCTATGCCTCAGTGGCACACCCCATGAGCAATGGACAGGTGGAGCGAGCCAACGGCATGATACTTCAAGGAATAAAAGCACGTGTCTTTGACCGGCTAAAACCCTATGCCGGCAAATGGGTGCAACAGTTACCATCGGTGCTTTGGTCATTGCGTACTACACCCAGTCGGGCCACAGGCCAGTCACCTTTTTTCCTTGTTTATGGGGCAGAAGCAATGTTGCCGAGTGAAGTTGAATTCGAATCTTTGCGCTTTCGAAATTTCCGTGAAGAACGCTACGAAGAGGACCGAGTGGATGACTTGCACCGATTGGAAGAAGTCCGCGAAGCAGCTCTGA

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CDS seq

ATGCCCGGTATTCCTAGGGAGGTGATTGAGCACTCCTTACATGTCAAAGAAGATGCCAAGCCTATCAAGCAACGACTCCGCCGATTTGCGCAAGACAGGAAAGATGCGATCAAGGAGGAATTAACCAAGCTGTTAGCAGCAGGCTTCATCAAAGAAGTCCTTCATCCCGACTGGCTGGCGAACCCGGTTCTAGTTCGGAAGAAAACAGGGCAATGGCGCATGTGTGTTGATTATACCGACCTCAACAAATCCTGCCCTAAAGATCCTTTTGGGTTGCCTCGCATTGACCAGGTGGTTGACTCGACCGCCGGCTGCGAGCTTCTCAGTTTTTTGGACTGCTACTCGGGGTATCATCAGATCCGACTAAAGGAATTCGACTGCTTGAAGACTTCATTTATCACGCCCTTTGGAGCGTACTGCTACATCACCATGCCATTCGGATTGAAGAACGCAGGAGCAACTTATCAACGCATGATCCAGAGATGTTTCTCAACACAGATTGGTCGCAACGTCGAAGCCTATGTGGATGATGTAGTCGTCAAGACTAAGCAAAAGGATGATTTGATTTCGGATCTGGAAGAAACCTTCGCGAGCATCCGTGCTTTCAGGATGAAATTAAACCCTGAAAAGTGCACCTTCGGAGTACCGTCAGGGAAGCTGCTTGGTTTTATGGTGTCTCATAGGGGCATCCAAGCCAACCCGGAGAAAGTTACCGCTATCCTCAACATGAAACCGCCAAGTACCCAGAAAGATGTTCAAAAGCTGACTGGATGCATGGCGGCGCTTAGCCGATTCGTTTCAAGACTCGGCGAGCGGGGGATGCCCTTCTTCAAGCTACTGAAGAAAACAGATGATTTCCAGTGGGGACCCGAAGCACAGAAGGCCTTCGAAGATTTCAAAAAACTCCTCACTGAGCCACCAGTCTTAGCCTCACCGCACCCGCAGGAGCCGTTGCTGCTGTATGTATCAGCCACCTCCCAGGTTGTGAGCACAGTCTTGGTTGTTGAGCGCGAGGAAGAAGGCCATGTCCAGAAAGTTCAGCGACCCATCTATTTTGTCAGCGAGGTCCTAGCCGACTCCAAAACGAGGTACCCTCAGGTTCAGAAGCTGTTATATGGTATTTTAATCACTACCAGGAAGCTATCTCATTACTTTCAAAGTCACTCGGTGACGGTGGTCACATCGTTTCCACTCGGCGATATATTGCACAACCGCGAAGCAAACGGACGGATTGCGAAGTGGGCCTTGGAGTTGATGTCTTTGGACATATCATTCAAGCCCCGAATTTCAATCAAATCCCAAGCATTAGCTGATTTCGTCGCCGAATGGACCGAGTGCCAAGAGGATACCCCCGCGGAGAAGATAGAGCACTGGACCATGCATTTTGACGGATCAAAACGACTTTCGGGCACTGGAGCAGGAGTGGTTTTAATTTCCCCAACTGGAGAAAGATTAAGCTATGTGCTTTGGATACACTTTTCGGCGTCCCATAACGTCGCCGAGTATGAGGCACTTCTTCATGGACTGCGGATTGCAATTTCCCTAGGGATAAAGCGTCTAATAGTTCGGGGCGATTCACAGCTGGTCGTCAACCAAGTTATGAAAGAGTGGTCCTGCCTTGACGACAATATGATGGCATATCGACAAGAGGTACGCAAATTGGAAGACAAGTTCGATGGACTCGAGCTCAGTCACGTTCTTCGACACAATAATGAAGCCGCCGACAGACTTGCCAACTTTGGATCCAAGCGCGAGGTGGCGCCCTCTGATGTTTTCGTCGAACACCTTTATGTGCCGACAGTACCTCACAAAGATACTACTCAAGTTGCGGGCACTCAAGACGTTGCTATGATTGAAGTCGACTGGCGAGAGCCCTTCATACAATTTTTAACTTCTCAAGAACTCCCTCAAGACAAAAATGAAGCCGAGCGGATTTCACGGCGGAGCAAACTTTATGTTATCCATGAAGCCGAGTTATACAAGAAAAGTCCTTCAGGAATTCTGCAACGCTGCGTATCTTTAGAGGAAGGGAGACAATTGCTGAAAGACATACATTCTGGGATATGTGGGAACCATGCTGCTGCACGCACCATTGTCGGCAAAGCTTACCGGCAGGGTTTTTTCTGGCCTACTGCAGTGTCTGATGCCGACAAGATTGTGCGCACATGCGAAGGTTGCCAATTTTTCGCCAGACAAATTCATCTACCAGCTCAAGAGTTACAGACTATCCCGCTGTCTTGGCCGTTTGCGGTTTGGGGGCTCGACATGGTTGGCCCGTTCAAAAAGGCAGTCGGCGGATACACGCACCTCTTTGTCGCCATTGACAAATTCTCCAAGTGGATTGAAGCCAAACCGGTTGTCACAATCACGGTAGATAATGCTCGAGACTTTTTCATCAATATTGTGCATAGATTTGGGGTGCCCAATCGGATCATCACTGATAATGGCACACAATTCACCGGCGGAGTTTTTAAAGACTTTTGTGAGGACTTTGGAATTAAGATTTGCTATGCCTCAGTGGCACACCCCATGAGCAATGGACAGGTGGAGCGAGCCAACGGCATGATACTTCAAGGAATAAAAGCACGTGTCTTTGACCGGCTAAAACCCTATGCCGGCAAATGGGTGCAACAGTTACCATCGAACGCTACGAAGAGGACCGAGTGGATGACTTGCACCGATTGGAAGAAGTCCGCGAAGCAGCTCTGA

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Protein seq

MPGIPREVIEHSLHVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLAAGFIKEVLHPDWLANPVLVRKKTGQWRMCVDYTDLNKSCPKDPFGLPRIDQVVDSTAGCELLSFLDCYSGYHQIRLKEFDCLKTSFITPFGAYCYITMPFGLKNAGATYQRMIQRCFSTQIGRNVEAYVDDVVVKTKQKDDLISDLEETFASIRAFRMKLNPEKCTFGVPSGKLLGFMVSHRGIQANPEKVTAILNMKPPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDDFQWGPEAQKAFEDFKKLLTEPPVLASPHPQEPLLLYVSATSQVVSTVLVVEREEEGHVQKVQRPIYFVSEVLADSKTRYPQVQKLLYGILITTRKLSHYFQSHSVTVVTSFPLGDILHNREANGRIAKWALELMSLDISFKPRISIKSQALADFVAEWTECQEDTPAEKIEHWTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEAADRLANFGSKREVAPSDVFVEHLYVPTVPHKDTTQVAGTQDVAMIEVDWREPFIQFLTSQELPQDKNEAERISRRSKLYVIHEAELYKKSPSGILQRCVSLEEGRQLLKDIHSGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFARQIHLPAQELQTIPLSWPFAVWGLDMVGPFKKAVGGYTHLFVAIDKFSKWIEAKPVVTITVDNARDFFINIVHRFGVPNRIITDNGTQFTGGVFKDFCEDFGIKICYASVAHPMSNGQVERANGMILQGIKARVFDRLKPYAGKWVQQLPSNATKRTEWMTCTDWKKSAKQL

Function Retrovirus-related Pol polyprotein from transposon 297 [UniProtKB/Swiss-Prot:P20825]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsMH63_06G0218000 OsMH63_06T0218000.1 Chr06 13026921 13029762 + maker
CDS seq

ATGCCCGGTATTCCTAGGGAGGTGATTGAGCACTCCTTACATGTCAAAGAAGATGCCAAGCCTATCAAGCAACGACTCCGCCGATTTGCGCAAGACAGGAAAGATGCGATCAAGGAGGAATTAACCAAGCTGTTAGCAGCAGGCTTCATCAAAGAAGTCCTTCATCCCGACTGGCTGGCGAACCCGGTTCTAGTTCGGAAGAAAACAGGGCAATGGCGCATGTGTGTTGATTATACCGACCTCAACAAATCCTGCCCTAAAGATCCTTTTGGGTTGCCTCGCATTGACCAGGTGGTTGACTCGACCGCCGGCTGCGAGCTTCTCAGTTTTTTGGACTGCTACTCGGGGTATCATCAGATCCGACTAAAGGAATTCGACTGCTTGAAGACTTCATTTATCACGCCCTTTGGAGCGTACTGCTACATCACCATGCCATTCGGATTGAAGAACGCAGGAGCAACTTATCAACGCATGATCCAGAGATGTTTCTCAACACAGATTGGTCGCAACGTCGAAGCCTATGTGGATGATGTAGTCGTCAAGACTAAGCAAAAGGATGATTTGATTTCGGATCTGGAAGAAACCTTCGCGAGCATCCGTGCTTTCAGGATGAAATTAAACCCTGAAAAGTGCACCTTCGGAGTACCGTCAGGGAAGCTGCTTGGTTTTATGGTGTCTCATAGGGGCATCCAAGCCAACCCGGAGAAAGTTACCGCTATCCTCAACATGAAACCGCCAAGTACCCAGAAAGATGTTCAAAAGCTGACTGGATGCATGGCGGCGCTTAGCCGATTCGTTTCAAGACTCGGCGAGCGGGGGATGCCCTTCTTCAAGCTACTGAAGAAAACAGATGATTTCCAGTGGGGACCCGAAGCACAGAAGGCCTTCGAAGATTTCAAAAAACTCCTCACTGAGCCACCAGTCTTAGCCTCACCGCACCCGCAGGAGCCGTTGCTGCTGTATGTATCAGCCACCTCCCAGGTTGTGAGCACAGTCTTGGTTGTTGAGCGCGAGGAAGAAGGCCATGTCCAGAAAGTTCAGCGACCCATCTATTTTGTCAGCGAGGTCCTAGCCGACTCCAAAACGAGGTACCCTCAGGTTCAGAAGCTGTTATATGGTATTTTAATCACTACCAGGAAGCTATCTCATTACTTTCAAAGTCACTCGGTGACGGTGGTCACATCGTTTCCACTCGGCGATATATTGCACAACCGCGAAGCAAACGGACGGATTGCGAAGTGGGCCTTGGAGTTGATGTCTTTGGACATATCATTCAAGCCCCGAATTTCAATCAAATCCCAAGCATTAGCTGATTTCGTCGCCGAATGGACCGAGTGCCAAGAGGATACCCCCGCGGAGAAGATAGAGCACTGGACCATGCATTTTGACGGATCAAAACGACTTTCGGGCACTGGAGCAGGAGTGGTTTTAATTTCCCCAACTGGAGAAAGATTAAGCTATGTGCTTTGGATACACTTTTCGGCGTCCCATAACGTCGCCGAGTATGAGGCACTTCTTCATGGACTGCGGATTGCAATTTCCCTAGGGATAAAGCGTCTAATAGTTCGGGGCGATTCACAGCTGGTCGTCAACCAAGTTATGAAAGAGTGGTCCTGCCTTGACGACAATATGATGGCATATCGACAAGAGGTACGCAAATTGGAAGACAAGTTCGATGGACTCGAGCTCAGTCACGTTCTTCGACACAATAATGAAGCCGCCGACAGACTTGCCAACTTTGGATCCAAGCGCGAGGTGGCGCCCTCTGATGTTTTCGTCGAACACCTTTATGTGCCGACAGTACCTCACAAAGATACTACTCAAGTTGCGGGCACTCAAGACGTTGCTATGATTGAAGTCGACTGGCGAGAGCCCTTCATACAATTTTTAACTTCTCAAGAACTCCCTCAAGACAAAAATGAAGCCGAGCGGATTTCACGGCGGAGCAAACTTTATGTTATCCATGAAGCCGAGTTATACAAGAAAAGTCCTTCAGGAATTCTGCAACGCTGCGTATCTTTAGAGGAAGGGAGACAATTGCTGAAAGACATACATTCTGGGATATGTGGGAACCATGCTGCTGCACGCACCATTGTCGGCAAAGCTTACCGGCAGGGTTTTTTCTGGCCTACTGCAGTGTCTGATGCCGACAAGATTGTGCGCACATGCGAAGGTTGCCAATTTTTCGCCAGACAAATTCATCTACCAGCTCAAGAGTTACAGACTATCCCGCTGTCTTGGCCGTTTGCGGTTTGGGGGCTCGACATGGTTGGCCCGTTCAAAAAGGCAGTCGGCGGATACACGCACCTCTTTGTCGCCATTGACAAATTCTCCAAGTGGATTGAAGCCAAACCGGTTGTCACAATCACGGTAGATAATGCTCGAGACTTTTTCATCAATATTGTGCATAGATTTGGGGTGCCCAATCGGATCATCACTGATAATGGCACACAATTCACCGGCGGAGTTTTTAAAGACTTTTGTGAGGACTTTGGAATTAAGATTTGCTATGCCTCAGTGGCACACCCCATGAGCAATGGACAGGTGGAGCGAGCCAACGGCATGATACTTCAAGGAATAAAAGCACGTGTCTTTGACCGGCTAAAACCCTATGCCGGCAAATGGGTGCAACAGTTACCATCGAACGCTACGAAGAGGACCGAGTGGATGACTTGCACCGATTGGAAGAAGTCCGCGAAGCAGCTCTGA

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Protein seq

MPGIPREVIEHSLHVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLAAGFIKEVLHPDWLANPVLVRKKTGQWRMCVDYTDLNKSCPKDPFGLPRIDQVVDSTAGCELLSFLDCYSGYHQIRLKEFDCLKTSFITPFGAYCYITMPFGLKNAGATYQRMIQRCFSTQIGRNVEAYVDDVVVKTKQKDDLISDLEETFASIRAFRMKLNPEKCTFGVPSGKLLGFMVSHRGIQANPEKVTAILNMKPPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDDFQWGPEAQKAFEDFKKLLTEPPVLASPHPQEPLLLYVSATSQVVSTVLVVEREEEGHVQKVQRPIYFVSEVLADSKTRYPQVQKLLYGILITTRKLSHYFQSHSVTVVTSFPLGDILHNREANGRIAKWALELMSLDISFKPRISIKSQALADFVAEWTECQEDTPAEKIEHWTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEAADRLANFGSKREVAPSDVFVEHLYVPTVPHKDTTQVAGTQDVAMIEVDWREPFIQFLTSQELPQDKNEAERISRRSKLYVIHEAELYKKSPSGILQRCVSLEEGRQLLKDIHSGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFARQIHLPAQELQTIPLSWPFAVWGLDMVGPFKKAVGGYTHLFVAIDKFSKWIEAKPVVTITVDNARDFFINIVHRFGVPNRIITDNGTQFTGGVFKDFCEDFGIKICYASVAHPMSNGQVERANGMILQGIKARVFDRLKPYAGKWVQQLPSNATKRTEWMTCTDWKKSAKQL

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.0061615 0.0209445 0.005375

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) NA NA NA NA NA
Nipponbare | IRGSP 1.0 | MSU LOC_Os06g29760 RBH 0.0 0.0 0.0
Nipponbare | IRGSP 1.0 | RAP-db NA NA NA NA NA
Azucena | AzucenaRS1 | Gramene(+IsoSeq) NA NA NA NA NA
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) NA NA NA NA NA
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) NA NA NA NA NA
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) NA NA NA NA NA
PR 106 | Os127742RS1 | Gramene(+IsoSeq) NA NA NA NA NA
Minghui 63 | MH63RS3 | HZAU OsMH63_03G0417800 SBH 0.0132365 0 0
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) NA NA NA NA NA
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_06G0212500 RBH 0.0795395 0.188509 0.082697
LIMA | Os127564RS1 | Gramene(+IsoSeq) NA NA NA NA NA
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) NA NA NA NA NA
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) NA NA NA NA NA
LIU XU | Os125827RS1 | Gramene(+IsoSeq) NA NA NA NA NA
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) NA NA NA NA NA
N22 | OsN22RS2 | Gramene(+IsoSeq) NA NA NA NA NA
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) NA NA NA NA NA
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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