Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_02G0226800 | OGI:02039550 | 2/16 | Minghui 63 | MH63RS3 | HZAU | Chr02:14642981-14644938 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTAGTGAATTTCCGGGCGTGACACCGTTCCCACATCGTTGTTGGATCCTGCGGTGCTAAGGAATGGACGCCCCAGGATGAGTGGCGTCTCCTTCCCCGTGTCCATGTCTAGCACCACAAAATCAACCGGGATGAAGAAGTCCCGTATCTTGACTGGCACATCCTCTGCTATCCCTACCGGGTAACGGACTGATGAGTCAGCCAATTGGAGGTACATCGGTGTTAGTGCCAACACCGTGAAGTTGAGCTTGTCGAAGACGTCTTTTGGCATGACGCTGACGCTGGCTCCAAGGTCGCATAAGGCCTGGTCGAATTGTTGTGCCCCGATCGAGCAGGTGATCGTAGGACACCCCAGATCTTTCTTCTTTTCCGGGAGCTTATGGAGTATGACGTTGCTGCATTGTTCCGTTAGCTTGACCACCTCCATTGTTGGGAGCAGTCTCTTGTTGTTGAGTATATCTTTGAGATAACGGGCATATGTCGGCACTTGCATAGCGTCCAACAACGGCATGTTGATGTGGATCTTCTGGATCACTTCAACAAAACGAGCGAACTGCTCGTCCATTGACGGTTTCCTCATCCGTTGGGGAAACGGCAGCAACCGTGTGTCACAGTATTCCTGCAGCACTGTCTTTTCTGGCTGAATCTCCTTGTCAGCCGAGTCATTAGATGGCGCTTCTTTTGACATCCCATTAGTTCCTGTAGGGTTAGGATATGGCGGATCACGAGTGGACTTACCTCCCCTCGTCGTGATCGCCTTGACATTTTCAATGGAGGAGTCGGGTTGCCCCAGAATCCTCCTAGTTTCATTTGTAGGGACTAAAGATGCTAACTGAGCTAACTGGGTTTATGTCATTTTGTTAAAGCTCAGCTGATTTTGAAAGGCAGAAGCAAAGCCATCTAACTTGACATTAATGTTCTCTAGGACCTTATCATTGGCAGCAAGTTTTTTGCTTAATCCATCAGTGGTTTAAACTTGCGCAAAAACGAGATCCTTCAGGGAGGGCTAGTTAGAGAAGTTACCGTTATTGTTATCTCCTTGATAATATGGGCGTGGTTGGTTCCACCCCTGACCTCCTTGTGGACGATACCCGTTGTTGTTGCCCATGTACATCGCCTCCTCACGGGTTTCCGGGCAGTCATTCCCAGAATGACCCGTGCCGCCGCAGACCTCACACGTGACGTGACGTGTGAGTCCAAGGCCTTGACGGTGCCTTGTGGCCTTTTCTCATGGCCGTCCAAGCGTTTCATGAGGAGGTCCAGCTTGGCAGCAAGTAACTCTGTCTCCTTGACGGTGTGCATGCCTCGCTGACGGGTCTGGAGTCGTTCCTCGCTCCAACCCATATTGGAGACCATCTTCTCTATCAGTTCAACGACTCCTTGAACCGTTTTAGAAAAGAAGGCTCCTCCAGCCGTAGCGTCCAGGTGATCGCGGGACATTGGGGTGAGTCCGTTGTAAAAATTCTGCAGGATCAGCCAGTCGTCCATCCCATGATGAGGACAGGCGGCCACGTACTCCTGCAGTCGTTCCCATGCTTCGGGAATAGACTCGTCCCTTGTCTGCTGGAAACTGGAAATCCTTCCATGAAGGGCATTGGTTTTGCCCGTCGGGAAGAATTTCGAGAGGAATGCCGTAGAGCATTTGTCCCAGGTGTTGACAACAGCATGGTTGGCATAAAATCACTACTTCGCTCTCCCGAGAAGGGAGAACGGAAATAGCCGCAACCTGACGACGTCGGGACTGACACCCTTAATGGTATACGTGCTACAGATCTCCAGGAACTGTTGCAGATGAGCATTGGCATCCTCATTAGGCTTGTCACAGAACGGGCTAGCCTGTGCCATCGTCATGAGGCTGGACTTCAAGTCGAAATCCACGTCCCCTATGTTGACCTGCGGCCCAATGGCCACATTGTCAGCAGAGGGAGCAGCGAACTCGCGAAGAGTCTTGCTGGCCAT
More
|
||||||||||
| CDS seq | ATGGCCAGCAAGACTCTTCGCGAGTTCGCTGCTCCCTCTGCTGACAATGTGGCCATTGGGCCGCAGGTCAACATAGGGGACGTGGATTTCGACTTGAAGTCCAGCCTCATGACGATGGCACAGGCTAGCCCGTTCTGTGACAAGCCTAATGAGGATGCCAATGCTCATCTGCAACAGTTCCTGGAGATCTGTAGCACGTATACCATTAAGGGTGTCAGTCCCGACGTCGTCAGGTTGCGGCTATTTCCGTTCTCCCTTCTCGGGAGAGCGAAGATTTCCAGTTTCCAGCAGACAAGGGACGAGTCTATTCCCGAAGCATGGGAACGACTGCAGGAGTACGTGGCCGCCTGTCCTCATCATGGGATGGACGACTGGCTGATCCTGCAGAATTTTTACAACGGACTCACCCCAATGTCCCGCGATCACCTGGACGCTACGGCTGGAGGAGCCTTCTTTTCTAAAACGGTTCAAGGAGTCGTTGAACTGATAGAGAAGATGGTCTCCAATATGGGTTGGAGCGAGGAACGACTCCAGACCCGTCAGCGAGGCATGCACACCGTCAAGGAGACAGAGTTACTTGCTGCCAAGCTGGACCTCCTCATGAAACGCTTGGACGGCCATGAGAAAAGGCCACAAGGCACCGTCAAGGCCTTGGACTCACACGTCACGTCACGTGTGAGGTCTGCGGCGGCACGGGTCATTCTGGGAATGACTGCCCGGAAACCCGTGAGGAGGCGATGTACATGGGCAACAACAACGGGTATCGTCCACAAGGAGGTCAGGGGTGGAACCAACCACGCCCATATTATCAAGGAGATAACAATAACGTTAGCTCAGTTAGCATCTTTAGTCCCTACAAATGAAACTAGGAGGATTCTGGGGCAACCCGACTCCTCCATTGAAAATGTCAAGGCGATCACGACGAGGGGAGGTAAGTCCACTCGTGATCCGCCATATCCTAACCCTACAGGAACTAATGGGATGTCAAAAGAAGCGCCATCTAATGACTCGGCTGACAAGGAGATTCAGCCAGAAAAGACAGTGCTGCAGGAATACTGTGACACACGGTTGCTGCCGTTTCCCCAACGGATGAGGAAACCGTCAATGGACGAGCAGTTCGCTCGTTTTGTTGAAGTGATCCAGAAGATCCACATCAACATGCCGTTGTTGGACGCTATGCAAGTGCCGACATATGCCCGTTATCTCAAAGATATACTCAACAACAAGAGACTGCTCCCAACAATGGAGGTGGTCAAGCTAACGGAACAATGCAGCAACGTCATACTCCATAAGCTCCCGGAAAAGAAGAAAGATCTGGGGTGTCCTACGATCACCTGCTCGATCGGGGCACAACAATTCGACCAGGCCTTATGCGACCTTGGAGCCAGCGTCAGCGTCATGCCAAAAGACGTCTTCGACAAGCTCAACTTCACGGTGTTGGCACTAACACCGATGTACCTCCAATTGGCTGACTCATCAGTCCGTTACCCGGTAGGGATAGCAGAGGATGTGCCAGTCAAGATACGGGACTTCTTCATCCCGGTTGATTTTGTGGTGCTAGACATGGACACGGGGAAGGAGACGCCACTCATCCTGGGGCGTCCATTCCTTAGCACCGCAGGATCCAACAACGATGTGGGAACGGTGTCACGCCCGGAAATTCACTAG
More
|
||||||||||
| Protein seq | MASKTLREFAAPSADNVAIGPQVNIGDVDFDLKSSLMTMAQASPFCDKPNEDANAHLQQFLEICSTYTIKGVSPDVVRLRLFPFSLLGRAKISSFQQTRDESIPEAWERLQEYVAACPHHGMDDWLILQNFYNGLTPMSRDHLDATAGGAFFSKTVQGVVELIEKMVSNMGWSEERLQTRQRGMHTVKETELLAAKLDLLMKRLDGHEKRPQGTVKALDSHVTSRVRSAAARVILGMTARKPVRRRCTWATTTGIVHKEVRGGTNHAHIIKEITITLAQLASLVPTNETRRILGQPDSSIENVKAITTRGGKSTRDPPYPNPTGTNGMSKEAPSNDSADKEIQPEKTVLQEYCDTRLLPFPQRMRKPSMDEQFARFVEVIQKIHINMPLLDAMQVPTYARYLKDILNNKRLLPTMEVVKLTEQCSNVILHKLPEKKKDLGCPTITCSIGAQQFDQALCDLGASVSVMPKDVFDKLNFTVLALTPMYLQLADSSVRYPVGIAEDVPVKIRDFFIPVDFVVLDMDTGKETPLILGRPFLSTAGSNNDVGTVSRPEIH |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_02G0226800 | OsMH63_02T0226800.1 | Chr02 | 14642981 | 14644938 | - | maker | ||
| CDS seq | ATGGCCAGCAAGACTCTTCGCGAGTTCGCTGCTCCCTCTGCTGACAATGTGGCCATTGGGCCGCAGGTCAACATAGGGGACGTGGATTTCGACTTGAAGTCCAGCCTCATGACGATGGCACAGGCTAGCCCGTTCTGTGACAAGCCTAATGAGGATGCCAATGCTCATCTGCAACAGTTCCTGGAGATCTGTAGCACGTATACCATTAAGGGTGTCAGTCCCGACGTCGTCAGGTTGCGGCTATTTCCGTTCTCCCTTCTCGGGAGAGCGAAGATTTCCAGTTTCCAGCAGACAAGGGACGAGTCTATTCCCGAAGCATGGGAACGACTGCAGGAGTACGTGGCCGCCTGTCCTCATCATGGGATGGACGACTGGCTGATCCTGCAGAATTTTTACAACGGACTCACCCCAATGTCCCGCGATCACCTGGACGCTACGGCTGGAGGAGCCTTCTTTTCTAAAACGGTTCAAGGAGTCGTTGAACTGATAGAGAAGATGGTCTCCAATATGGGTTGGAGCGAGGAACGACTCCAGACCCGTCAGCGAGGCATGCACACCGTCAAGGAGACAGAGTTACTTGCTGCCAAGCTGGACCTCCTCATGAAACGCTTGGACGGCCATGAGAAAAGGCCACAAGGCACCGTCAAGGCCTTGGACTCACACGTCACGTCACGTGTGAGGTCTGCGGCGGCACGGGTCATTCTGGGAATGACTGCCCGGAAACCCGTGAGGAGGCGATGTACATGGGCAACAACAACGGGTATCGTCCACAAGGAGGTCAGGGGTGGAACCAACCACGCCCATATTATCAAGGAGATAACAATAACGTTAGCTCAGTTAGCATCTTTAGTCCCTACAAATGAAACTAGGAGGATTCTGGGGCAACCCGACTCCTCCATTGAAAATGTCAAGGCGATCACGACGAGGGGAGGTAAGTCCACTCGTGATCCGCCATATCCTAACCCTACAGGAACTAATGGGATGTCAAAAGAAGCGCCATCTAATGACTCGGCTGACAAGGAGATTCAGCCAGAAAAGACAGTGCTGCAGGAATACTGTGACACACGGTTGCTGCCGTTTCCCCAACGGATGAGGAAACCGTCAATGGACGAGCAGTTCGCTCGTTTTGTTGAAGTGATCCAGAAGATCCACATCAACATGCCGTTGTTGGACGCTATGCAAGTGCCGACATATGCCCGTTATCTCAAAGATATACTCAACAACAAGAGACTGCTCCCAACAATGGAGGTGGTCAAGCTAACGGAACAATGCAGCAACGTCATACTCCATAAGCTCCCGGAAAAGAAGAAAGATCTGGGGTGTCCTACGATCACCTGCTCGATCGGGGCACAACAATTCGACCAGGCCTTATGCGACCTTGGAGCCAGCGTCAGCGTCATGCCAAAAGACGTCTTCGACAAGCTCAACTTCACGGTGTTGGCACTAACACCGATGTACCTCCAATTGGCTGACTCATCAGTCCGTTACCCGGTAGGGATAGCAGAGGATGTGCCAGTCAAGATACGGGACTTCTTCATCCCGGTTGATTTTGTGGTGCTAGACATGGACACGGGGAAGGAGACGCCACTCATCCTGGGGCGTCCATTCCTTAGCACCGCAGGATCCAACAACGATGTGGGAACGGTGTCACGCCCGGAAATTCACTAG
More
|
|||||||
| Protein seq | MASKTLREFAAPSADNVAIGPQVNIGDVDFDLKSSLMTMAQASPFCDKPNEDANAHLQQFLEICSTYTIKGVSPDVVRLRLFPFSLLGRAKISSFQQTRDESIPEAWERLQEYVAACPHHGMDDWLILQNFYNGLTPMSRDHLDATAGGAFFSKTVQGVVELIEKMVSNMGWSEERLQTRQRGMHTVKETELLAAKLDLLMKRLDGHEKRPQGTVKALDSHVTSRVRSAAARVILGMTARKPVRRRCTWATTTGIVHKEVRGGTNHAHIIKEITITLAQLASLVPTNETRRILGQPDSSIENVKAITTRGGKSTRDPPYPNPTGTNGMSKEAPSNDSADKEIQPEKTVLQEYCDTRLLPFPQRMRKPSMDEQFARFVEVIQKIHINMPLLDAMQVPTYARYLKDILNNKRLLPTMEVVKLTEQCSNVILHKLPEKKKDLGCPTITCSIGAQQFDQALCDLGASVSVMPKDVFDKLNFTVLALTPMYLQLADSSVRYPVGIAEDVPVKIRDFFIPVDFVVLDMDTGKETPLILGRPFLSTAGSNNDVGTVSRPEIH
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0419965 | 0.020921 | 0.0179265 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g23830 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0364800 | SBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0239600 | RBH | 0.1063825 | 0.0179745 | 0.081902 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
