Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_Ung0006260 | OGI:99015840 | 1/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | ChrUN-Ctg65:31988-33616 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGCTGCGCCGCCTACCGCTCCGCCTCGCGCCGACGCTCGCCGGCGGCGGCGGCGGCGCCATCCCCCACCGCGTCCTTCGCGGCGCGTGCACCGCCGCGCCAGCCTCCAGGCCCCCGCCCGACCCGCTCTCCCCGTCCGACCTCGACGCCGTCTCCGCGCTCCTCCCGCGCCTCGTCTCCGCGGGGAACGTCCCCGCCGCCGGCCGCCTCCTCACCGCCGCGCTCCTCCTCCCGGGCTCCACGGAGCGCCTCCCGTTCTCCCCGCTCGCCGCGCACCTCGCCTCCATGCCCACCCTCACCCCGGCCTTCGCGCTCCTCACCGCCATCCGCCACCACCCGCTCCGCCCCTCGCCGCTGCCCCTCGCCACGCCGCTCCTCGGCCACCTCCTCTCGCGCCGCCGCGCCCGCGAGGCCGCCTCCGTCGTCCGCTGGCTCTGCCGCCCGGACTCCCCGCAGCGGCCCGACAGCGCCACCTTCGCTGTCGCCGTCGCGGGGCTCTGCCGGCTCGAGGACCCCAGGAACGCGCTCGCCGCGCTCCGGGAGATGGCCGTGGACGGGATACGGACCTCGGCGAAGCTGCGGGAGTCGGTGCGGGACGCGATGCTGCAGGACGCGAGGATCGAGGAGGCGTGGGCGCTGGAGGCGGCGATGAAGCAGCCGGACTCCGGCAAGCTGGCTGAGCTGGTCCAGAAGCTTCTCGAAGAGTGGGAGGACTGAGACATTGCCGAGGTCGAAGGATCTTGGTTCTCCCTTGCTTCTCGATCAAGGTAGAATTTCCCAATGCATTTTTCTTCGATTTGTTCAATGTCTAGTGCAACTGAGCATGTGATGTTATCACTGAGAAATTAATTAGTGAAATACTGATATACTCCATGTGGTGATATGATCTTTGATAGCATCTGTAAATTGTTCGCTGAGCAGTCGATAATCGTGTCAATGCGATTCTCTAAATTTTCGCAAACCTGAAAGCTTCACCTGATAGAGTTTGCAAATGGGTTGGGAATAGCATATCTATGAAATTGTGTCGACATTAGTTCAGATTGTTGCAGCATGAGAGCCCAGAAATTCATATGGTGGAGCTTTCGCAACAATTTTGCAGAGTTTCTTGAATCCAAATACGAGAAGCTGATTTTGCTACAGGTTGATGTAAAAAATGGATGTGCAGTTTGGTGTAAAACTGGATGTGGTGTTCAAATTTTGCAACCATACCAAAGCATACTTTTCATTATGAAAGATGGACACCGGTGTCTTATCTATGCACAATTCTTAAAAAGGAATAGTAAGAAAAAGAGGCAAATGGTCAGACCTACTAGTAGTTATATGAGGGTATCGTTTGTTGATGGGAACTCTCTGTTCATGGTCTGAAAATTAACACAGGCAAACTTTGCATTCTTGCAGGCACAACGTGTTGAAAAATGGACTTTTTTCAGAACAAAGAACAGACAGTTCTCCCTAAACAGAGAGTACAAAGCTTCGGGTTTATAAGAACTTGCAAGATTAGGATTACAAAGCTTCTAGTTTATAAAAACTTGCAAGATTAGGATTAGCGATTGATTTATCTATCAAAGAGATGTTTGTAAGAACTTGCAAGATTAGGATTAGAGATTGGTTTATCTATCAAAGAGATGG
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| CDS seq | ATGCTGCGCCGCCTACCGCTCCGCCTCGCGCCGACGCTCGCCGGCGGCGGCGGCGGCGCCATCCCCCACCGCGTCCTTCGCGGCGCGTGCACCGCCGCGCCAGCCTCCAGGCCCCCGCCCGACCCGCTCTCCCCGTCCGACCTCGACGCCGTCTCCGCGCTCCTCCCGCGCCTCGTCTCCGCGGGGAACGTCCCCGCCGCCGGCCGCCTCCTCACCGCCGCGCTCCTCCTCCCGGGCTCCACGGAGCGCCTCCCGTTCTCCCCGCTCGCCGCGCACCTCGCCTCCATGCCCACCCTCACCCCGGCCTTCGCGCTCCTCACCGCCATCCGCCACCACCCGCTCCGCCCCTCGCCGCTGCCCCTCGCCACGCCGCTCCTCGGCCACCTCCTCTCGCGCCGCCGCGCCCGCGAGGCCGCCTCCGTCGTCCGCTGGCTCTGCCGCCCGGACTCCCCGCAGCGGCCCGACAGCGCCACCTTCGCTGTCGCCGTCGCGGGGCTCTGCCGGCTCGAGGACCCCAGGAACGCGCTCGCCGCGCTCCGGGAGATGGCCGTGGACGGGATACGGACCTCGGCGAAGCTGCGGGAGTCGGTGCGGGACGCGATGCTGCAGGACGCGAGGATCGAGGAGGCGTGGGCGCTGGAGGCGGCGATGAAGCAGCCGGACTCCGGCAAGCTGGCTGAGCTGGTCCAGAAGCTTCTCGAAGAGTGGGAGGACTGA
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| Protein seq | MLRRLPLRLAPTLAGGGGGAIPHRVLRGACTAAPASRPPPDPLSPSDLDAVSALLPRLVSAGNVPAAGRLLTAALLLPGSTERLPFSPLAAHLASMPTLTPAFALLTAIRHHPLRPSPLPLATPLLGHLLSRRRAREAASVVRWLCRPDSPQRPDSATFAVAVAGLCRLEDPRNALAALREMAVDGIRTSAKLRESVRDAMLQDARIEEAWALEAAMKQPDSGKLAELVQKLLEEWED |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_Ung0006260 | OsLima_Ung0006260.01 | ChrUN-Ctg65 | 31988 | 33616 | + | NAM | ||
| CDS seq | ATGCTGCGCCGCCTACCGCTCCGCCTCGCGCCGACGCTCGCCGGCGGCGGCGGCGGCGCCATCCCCCACCGCGTCCTTCGCGGCGCGTGCACCGCCGCGCCAGCCTCCAGGCCCCCGCCCGACCCGCTCTCCCCGTCCGACCTCGACGCCGTCTCCGCGCTCCTCCCGCGCCTCGTCTCCGCGGGGAACGTCCCCGCCGCCGGCCGCCTCCTCACCGCCGCGCTCCTCCTCCCGGGCTCCACGGAGCGCCTCCCGTTCTCCCCGCTCGCCGCGCACCTCGCCTCCATGCCCACCCTCACCCCGGCCTTCGCGCTCCTCACCGCCATCCGCCACCACCCGCTCCGCCCCTCGCCGCTGCCCCTCGCCACGCCGCTCCTCGGCCACCTCCTCTCGCGCCGCCGCGCCCGCGAGGCCGCCTCCGTCGTCCGCTGGCTCTGCCGCCCGGACTCCCCGCAGCGGCCCGACAGCGCCACCTTCGCTGTCGCCGTCGCGGGGCTCTGCCGGCTCGAGGACCCCAGGAACGCGCTCGCCGCGCTCCGGGAGATGGCCGTGGACGGGATACGGACCTCGGCGAAGCTGCGGGAGTCGGTGCGGGACGCGATGCTGCAGGACGCGAGGATCGAGGAGGCGTGGGCGCTGGAGGCGGCGATGAAGCAGCCGGACTCCGGCAAGCTGGCTGAGCTGGTCCAGAAGCTTCTCGAAGAGTGGGAGGACTGA
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| Protein seq | MLRRLPLRLAPTLAGGGGGAIPHRVLRGACTAAPASRPPPDPLSPSDLDAVSALLPRLVSAGNVPAAGRLLTAALLLPGSTERLPFSPLAAHLASMPTLTPAFALLTAIRHHPLRPSPLPLATPLLGHLLSRRRAREAASVVRWLCRPDSPQRPDSATFAVAVAGLCRLEDPRNALAALREMAVDGIRTSAKLRESVRDAMLQDARIEEAWALEAAMKQPDSGKLAELVQKLLEEWED
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.041505 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0616800 | SBH | 0.363698 | 0.466600 | 1.632811 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g43010 | SBH | 0.084548 | 0.107881 | 0.144865 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0616800 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0025320 | SBH | 0.000000 | 0.0 | 0.946769 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0024950 | SBH | 0.0 | 0.0 | 0.318622 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0025270 | SBH | 0.0 | 0.000000 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0024610 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0024340 | SBH | 0.000000 | 0.0 | 2.078459 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0411800 | SBH | 0.5481755 | 1.390554 | 0.527134 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0024020 | SBH | 0.078174 | 0.101107 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0400300 | SBH | 0.496876 | 0.8615125 | 1.5104 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0024280 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0024280 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0024520 | SBH | 0.0 | 4.224357 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0024530 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0024400 | SBH | 0.0 | 1.389446 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G024660 | SBH | 0.105800 | 0.569655 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0024410 | SBH | 0.288648 | 0.0 | 1.156439 |
