Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_Ung0004600 | OGI:99013400 | 1/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | ChrUN-Ctg48:188766-193054 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcataaagaaaggaacagacagcttgtttgcctaggaaatgaatttttactcaacacgagaatacttgtttttctagaaaaatgacataccattcggacactcccacccacaccaccccatagaggtgtggtgtgttgcttcccatttttatccaaataagaaaatccaatcccatcgacaacttggccccaagagactttcacacactccatacgccaaggtgccaccactatgtcatgattcctattgccttctccaccccatggtccaactcgttgaggcatgctctgattgcaacagatggagcaaaaattaggtaaaaaatactaaatgtttggttataagttcaacaataatgatggcaacgaccacgttatccaattactatgtttttgaacgtacgatttgatgacttaaaatgatgtgtaactattcgtcgacatattgaaaaactttgtatcacttattttgttatgatttattttctcaccaaactaaagacttataatttacatatttgcactaaatttttaaatgaaatgaatgatcaaacaccatatcaaaaagtcaatcgtgtcatatatttaaaaatgaagtaataaattatttaaaaatggggcactagggaaaaaaatagtcatgattgtatgttaaccaatttcattggggaaaaaactggcttgaatttgtgaattcaagttttctgtttgtttaaaaaatatgttcctttctgtttataaaattaacatcaagtttataaaaaactattctaatataccctctgccccctaataaattgccaactttttttaaccagattatatgtcccatgaaacatggttactgccagtaagcaggaatgattattccccactgtacaatgctactcaaagggaggagtaaatgatcaggaatatgtttttggtgtagaacactagttggctcgtaatttaatttaaaagtacaataatctaggtaggtagcaaattttcatttctacacttgataattgcacaaagttatggagattggagatgggtatgccagtgggtggatactagtaattcttttagaaagattaaatgcaaggaaaatgcaatcaaattaacaaagtttgataattaaatagtcaatggttcgcagttgctatacaaaactaattgattaattacctgtaactgctcttcttcttcaattgcttccaagttgtcgtggtgttgctcctcatccaattcatattcataacatctggtgatatcaaacattggattgttgggattattgacgattgccttccttatgtcagcttctgcactgtccacctcacatctcctgcaactggtacagcgaattttaacagatactttcctaacagaacagaggttctccaatccaatattaaaatctccgtacaagtcctttgtctcccgagccctgagcgtaatatcaagacttacaaggtttggcaaagctccttgtacaaacatgaggcccattgcacgacaactgtcaaagctaagatgatataggcactgaaactgtgaactacctgtgccaatgaccagcctttcttctgtggattcaatttcgactatgctaagataaagatagcgtagaattggtatgagcccaagattctggaggtcctcctgccgtagtatgtagagtgacatgtttatttggtacaggtttgagagagaggagttcatccagcttggcaatctggatatgccaccgcctaaaaaatcttttaggtgttgcggaaaccatcccaaatctgcaatgaaatctgtgggcactccaaaagattgaatatgtagctcttggattttctgcagtttgaacatggaatcgagtaaaggtttctcgtagctcttgcaccatgtaccagtaccactaatcaacgagatatggagaactctcagctcagttaaatagcctagctcgccaacaatgtctggcgagctgctcacgccaatagatgacagcacctgtagtaactttaatttcccaatgccctttggcagcttcactgaatcttcaatatagaggcgcaccaattgttttaatctaatagccgttgatggcagttcagttatggaggtgtgactcaagtccaatgtgtgcaagcaatgcaggttaccaacttcttttgggagttctgtgacattcgtatcccttagtcccaagtacctcaaatgaaacaatttctcaacaccagcaatgtgatgattctccaggtcacggcaatgctcaacatccaatactcgcaaaaccgggaggtttgaaagaggtggcatcaagttagtagcgccagggaagacaataactgatctcaaatgcgacaaattcaatgttgcatctgttaaattgtgcccttcttcgttattttggagtgataaccggcgaaccttctctggaagatctgcatgctggtatccatcaaatgtagtgacaaaattttcttcagttgaaagggatttgatgagatctaacaccatatcatggacacgacaagattcataatcggttagatgttctggttgaatcatgcttctattaatgagctcaaaaaagtatgaaaatcctagttgaagcagagagacagtatcatgttgtccatggacaaagccttcagctatccatcttcgtaccaactgatctgtcggaatactgtaatcttcaggaaaaacactaagatacaacaaacagggcttcaggattgaaggtaaatcattataactgatagacaaaatctggcgcatgttttccatgctgaagcctttttcaagtccagagccaatgatattgtgcacactgttccactcacttatgtttcgtggtttatttgccaataggctggctatagtgatgatggctaatggcactcccccgcatttctttaaaattttctcagatgtttctttcagttccggatgacacccatgttcacttccaaatactcttttgtagaacaactgcttcgagtcatcatgcaatagtggttttagtttgtagacagtaccatcaatatctgagcagcatgacatggcaacattaactgaacgagttgttgtgattattctgctgccacaattgttctcaaccagtgcacatttgatatatttccatgctgattcatcccatatatcatcgattataacaatatacctgcttttacaacgttaataagtaggtctacgtcagatgacataaaaattattgtttagtggtcttgccgtgcttttgttaagtgtatagtacaatttactatttgtaaaaatcaaactccgacatagcatttcagaaacaacaaatatttgtgctagtgagtttttcatggagcacagacctttttgaattatttatgtttaactttcgttaaccatttaccttctctgtattcaatgtctgaaaggataacttaaagttttatttaggtatgacaaggatataattaatgatcagtgcattacctcttatcaacaagaactcgcataattctgttgatgagttcctcagcttcccatgtttcaatgttagtgtaatcttcttcactgacttggcggagtaagctgcttagggtcctcttcaaatcaggcttaagggacacagaaacaaaagcatcacagtcaaattgatgcctgagccgttgatatgtcacgttagcaagagtagtcttgcctaaaccaccaactccaacaatggataccactttgagctggcgcttggacgtgccttctcgctccatcagcaggcttgataactcatctgttgggccactgatcgcaacaagtcttgttgtttcttcgtacataccatgcaagcgagtgtcaatagcttgagccataggttggtcaatgacaacatcaatcctatacctgtcacgccgctcagccacctccttgacaagtacctttatgcctttgatgtcaatggcgattcgacggcggatttttgcccttgtcaataaaccaagactcctaataaagaatcctttaattccacgcagcctcgctgatggctgagcttcgacgtgaaccatgaatgtgtcgatgatatcctcaatgtcataggatatctcccgcacactcctcgcccagatcttgaccatgttgtcagtcatctgtgcctcggacaccctcatgagggcagcttgcattatctccagctcagctttgagacatttgatctcgcccgtcaggcctctctgcaggttgtattcgcccgtcagtagggtgtccagcttcggcaggagggtgtgcatcgcccctgtcacgacctccat
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| CDS seq | atggaggtcgtgacaggggcgatgcacaccctcctgccgaagctggacaccctactgacgggcgaatacaacctgcagagaggcctgacgggcgagatcaaatgtctcaaagctgagctggagataatgcaagctgccctcatgagggtgtccgaggcacagatgactgacaacatggtcaagatctgggcgaggagtgtgcgggagatatcctatgacattgaggatatcatcgacacattcatggttcacgtcgaagctcagccatcagcgaggctgcgtggaattaaaggattctttattaggagtcttggtttattgacaagggcaaaaatccgccgtcgaatcgccattgacatcaaaggcataaaggtacttgtcaaggaggtggctgagcggcgtgacaggtataggattgatgttgtcattgaccaacctatggctcaagctattgacactcgcttgcatggtatgtacgaagaaacaacaagacttgttgcgatcagtggcccaacagatgagttatcaagcctgctgatggagcgagaaggcacgtccaagcgccagctcaaagtggtatccattgttggagttggtggtttaggcaagactactcttgctaacgtgacatatcaacggctcaggcatcaatttgactgtgatgcttttgtttctgtgtcccttaagcctgatttgaagaggaccctaagcagcttactccgccaagtcagtgaagaagattacactaacattgaaacatgggaagctgaggaactcatcaacagaattatgcgagttcttgttgataagaggtatattgttataatcgatgatatatgggatgaatcagcatggaaatatatcaaatgtgcactggttgagaacaattgtggcagcagaataatcacaacaactcgttcagttaatgttgccatgtcatgctgctcagatattgatggtactgtctacaaactaaaaccactattgcatgatgactcgaagcagttgttctacaaaagagtatttggaagtgaacatgggtgtcatccggaactgaaagaaacatctgagaaaattttaaagaaatgcgggggagtgccattagccatcatcactatagccagcctattggcaaataaaccacgaaacataagtgagtggaacagtgtgcacaatatcattggctctggacttgaaaaaggcttcagcatggaaaacatgcgccagattttgtctatcagttataatgatttaccttcaatcctgaagccctgtttgttgtatcttagtgtttttcctgaagattacagtattccgacagatcagttggtacgaagatggatagctgaaggctttgtccatggacaacatgatactgtctctctgcttcaactaggattttcatacttttttgagctcattaatagaagcatgattcaaccagaacatctaaccgattatgaatcttgtcgtgtccatgatatggtgttagatctcatcaaatccctttcaactgaagaaaattttgtcactacatttgatggataccagcatgcagatcttccagagaaggttcgccggttatcactccaaaataacgaagaagggcacaatttaacagatgcaacattgaatttgtcgcatttgagatcagttattgtcttccctggcgctactaacttgatgccacctctttcaaacctcccggttttgcgagtattggatgttgagcattgccgtgacctggagaatcatcacattgctggtgttgagaaattgtttcatttgaggtacttgggactaagggatacgaatgtcacagaactcccaaaagaagttggtaacctgcattgcttgcacacattggacttgagtcacacctccataactgaactgccatcaacggctattagattaaaacaattggtgcgcctctatattgaagattcagtgaagctgccaaagggcattgggaaattaaagttactacaggtgctgtcatctattggcgtgagcagctcgccagacattgttggcgagctaggctatttaactgagctgagagttctccatatctcgttgattagtggtactggtacatggtgcaagagctacgagaaacctttactcgattccatgttcaaactgcagaaaatccaagagctacatattcaatcttttggagtgcccacagatttcattgcagatttgggatggtttccgcaacacctaaaagattttttaggcggtggcatatccagattgccaagctggatgaactcctctctctcaaacctgtaccaaataaacatgtcactctacatactacggcaggaggacctccagaatcttgggctcataccaattctacgctatctttatcttagcatagtcgaaattgaatccacagaagaaaggctggtcattggcacaggtagttcacagtttcagtgcctatatcatcttagctttgacagttgtcgtgcaatgggcctcatgtttgtacaaggagctttgccaaaccttgtaagtcttgatattacgctcagggctcgggagacaaaggacttgtacggagattttaatattggattggagaacctctgttctgttaggaaagtatctgttaaaattcgctgtaccagttgcaggagatgtgaggtggacagtgcagaagctgacataaggaaggcaatcgtcaataatcccaacaatccaatgtttgatatcaccagatgttatgaatatgaattggatgaggagcaacaccacgacaacttggaagcaattgaagaagaagagcagttacagagcatgcctcaacgagttggaccatggggtggagaaggcaataggaatcatgacatagtggtggcaccttggcgtatggagtgtgtgaaagtctcttggggccaagttgtcgatgggattggattttcttatttggataaaaatgggaagcaacacaccacacctctatggggtggtgtgggtgggagtgtccgaatggtatgtcatttttctagaaaaacaagtattctcgtgttgagtaaaaattcatttcctaggcaaacaagctgtctgttcctttctttatga
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| Protein seq | MEVVTGAMHTLLPKLDTLLTGEYNLQRGLTGEIKCLKAELEIMQAALMRVSEAQMTDNMVKIWARSVREISYDIEDIIDTFMVHVEAQPSARLRGIKGFFIRSLGLLTRAKIRRRIAIDIKGIKVLVKEVAERRDRYRIDVVIDQPMAQAIDTRLHGMYEETTRLVAISGPTDELSSLLMEREGTSKRQLKVVSIVGVGGLGKTTLANVTYQRLRHQFDCDAFVSVSLKPDLKRTLSSLLRQVSEEDYTNIETWEAEELINRIMRVLVDKRYIVIIDDIWDESAWKYIKCALVENNCGSRIITTTRSVNVAMSCCSDIDGTVYKLKPLLHDDSKQLFYKRVFGSEHGCHPELKETSEKILKKCGGVPLAIITIASLLANKPRNISEWNSVHNIIGSGLEKGFSMENMRQILSISYNDLPSILKPCLLYLSVFPEDYSIPTDQLVRRWIAEGFVHGQHDTVSLLQLGFSYFFELINRSMIQPEHLTDYESCRVHDMVLDLIKSLSTEENFVTTFDGYQHADLPEKVRRLSLQNNEEGHNLTDATLNLSHLRSVIVFPGATNLMPPLSNLPVLRVLDVEHCRDLENHHIAGVEKLFHLRYLGLRDTNVTELPKEVGNLHCLHTLDLSHTSITELPSTAIRLKQLVRLYIEDSVKLPKGIGKLKLLQVLSSIGVSSSPDIVGELGYLTELRVLHISLISGTGTWCKSYEKPLLDSMFKLQKIQELHIQSFGVPTDFIADLGWFPQHLKDFLGGGISRLPSWMNSSLSNLYQINMSLYILRQEDLQNLGLIPILRYLYLSIVEIESTEERLVIGTGSSQFQCLYHLSFDSCRAMGLMFVQGALPNLVSLDITLRARETKDLYGDFNIGLENLCSVRKVSVKIRCTSCRRCEVDSAEADIRKAIVNNPNNPMFDITRCYEYELDEEQHHDNLEAIEEEEQLQSMPQRVGPWGGEGNRNHDIVVAPWRMECVKVSWGQVVDGIGFSYLDKNGKQHTTPLWGGVGGSVRMVCHFSRKTSILVLSKNSFPRQTSCLFLSL |
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| Function | Disease resistance protein RGA5 [UniProtKB/Swiss-Prot:Q2R8L1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_Ung0004600 | OsLima_Ung0004600.01 | ChrUN-Ctg48 | 188766 | 193054 | - | NAM | ||
| CDS seq | atggaggtcgtgacaggggcgatgcacaccctcctgccgaagctggacaccctactgacgggcgaatacaacctgcagagaggcctgacgggcgagatcaaatgtctcaaagctgagctggagataatgcaagctgccctcatgagggtgtccgaggcacagatgactgacaacatggtcaagatctgggcgaggagtgtgcgggagatatcctatgacattgaggatatcatcgacacattcatggttcacgtcgaagctcagccatcagcgaggctgcgtggaattaaaggattctttattaggagtcttggtttattgacaagggcaaaaatccgccgtcgaatcgccattgacatcaaaggcataaaggtacttgtcaaggaggtggctgagcggcgtgacaggtataggattgatgttgtcattgaccaacctatggctcaagctattgacactcgcttgcatggtatgtacgaagaaacaacaagacttgttgcgatcagtggcccaacagatgagttatcaagcctgctgatggagcgagaaggcacgtccaagcgccagctcaaagtggtatccattgttggagttggtggtttaggcaagactactcttgctaacgtgacatatcaacggctcaggcatcaatttgactgtgatgcttttgtttctgtgtcccttaagcctgatttgaagaggaccctaagcagcttactccgccaagtcagtgaagaagattacactaacattgaaacatgggaagctgaggaactcatcaacagaattatgcgagttcttgttgataagaggtatattgttataatcgatgatatatgggatgaatcagcatggaaatatatcaaatgtgcactggttgagaacaattgtggcagcagaataatcacaacaactcgttcagttaatgttgccatgtcatgctgctcagatattgatggtactgtctacaaactaaaaccactattgcatgatgactcgaagcagttgttctacaaaagagtatttggaagtgaacatgggtgtcatccggaactgaaagaaacatctgagaaaattttaaagaaatgcgggggagtgccattagccatcatcactatagccagcctattggcaaataaaccacgaaacataagtgagtggaacagtgtgcacaatatcattggctctggacttgaaaaaggcttcagcatggaaaacatgcgccagattttgtctatcagttataatgatttaccttcaatcctgaagccctgtttgttgtatcttagtgtttttcctgaagattacagtattccgacagatcagttggtacgaagatggatagctgaaggctttgtccatggacaacatgatactgtctctctgcttcaactaggattttcatacttttttgagctcattaatagaagcatgattcaaccagaacatctaaccgattatgaatcttgtcgtgtccatgatatggtgttagatctcatcaaatccctttcaactgaagaaaattttgtcactacatttgatggataccagcatgcagatcttccagagaaggttcgccggttatcactccaaaataacgaagaagggcacaatttaacagatgcaacattgaatttgtcgcatttgagatcagttattgtcttccctggcgctactaacttgatgccacctctttcaaacctcccggttttgcgagtattggatgttgagcattgccgtgacctggagaatcatcacattgctggtgttgagaaattgtttcatttgaggtacttgggactaagggatacgaatgtcacagaactcccaaaagaagttggtaacctgcattgcttgcacacattggacttgagtcacacctccataactgaactgccatcaacggctattagattaaaacaattggtgcgcctctatattgaagattcagtgaagctgccaaagggcattgggaaattaaagttactacaggtgctgtcatctattggcgtgagcagctcgccagacattgttggcgagctaggctatttaactgagctgagagttctccatatctcgttgattagtggtactggtacatggtgcaagagctacgagaaacctttactcgattccatgttcaaactgcagaaaatccaagagctacatattcaatcttttggagtgcccacagatttcattgcagatttgggatggtttccgcaacacctaaaagattttttaggcggtggcatatccagattgccaagctggatgaactcctctctctcaaacctgtaccaaataaacatgtcactctacatactacggcaggaggacctccagaatcttgggctcataccaattctacgctatctttatcttagcatagtcgaaattgaatccacagaagaaaggctggtcattggcacaggtagttcacagtttcagtgcctatatcatcttagctttgacagttgtcgtgcaatgggcctcatgtttgtacaaggagctttgccaaaccttgtaagtcttgatattacgctcagggctcgggagacaaaggacttgtacggagattttaatattggattggagaacctctgttctgttaggaaagtatctgttaaaattcgctgtaccagttgcaggagatgtgaggtggacagtgcagaagctgacataaggaaggcaatcgtcaataatcccaacaatccaatgtttgatatcaccagatgttatgaatatgaattggatgaggagcaacaccacgacaacttggaagcaattgaagaagaagagcagttacagagcatgcctcaacgagttggaccatggggtggagaaggcaataggaatcatgacatagtggtggcaccttggcgtatggagtgtgtgaaagtctcttggggccaagttgtcgatgggattggattttcttatttggataaaaatgggaagcaacacaccacacctctatggggtggtgtgggtgggagtgtccgaatggtatgtcatttttctagaaaaacaagtattctcgtgttgagtaaaaattcatttcctaggcaaacaagctgtctgttcctttctttatga
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| Protein seq | MEVVTGAMHTLLPKLDTLLTGEYNLQRGLTGEIKCLKAELEIMQAALMRVSEAQMTDNMVKIWARSVREISYDIEDIIDTFMVHVEAQPSARLRGIKGFFIRSLGLLTRAKIRRRIAIDIKGIKVLVKEVAERRDRYRIDVVIDQPMAQAIDTRLHGMYEETTRLVAISGPTDELSSLLMEREGTSKRQLKVVSIVGVGGLGKTTLANVTYQRLRHQFDCDAFVSVSLKPDLKRTLSSLLRQVSEEDYTNIETWEAEELINRIMRVLVDKRYIVIIDDIWDESAWKYIKCALVENNCGSRIITTTRSVNVAMSCCSDIDGTVYKLKPLLHDDSKQLFYKRVFGSEHGCHPELKETSEKILKKCGGVPLAIITIASLLANKPRNISEWNSVHNIIGSGLEKGFSMENMRQILSISYNDLPSILKPCLLYLSVFPEDYSIPTDQLVRRWIAEGFVHGQHDTVSLLQLGFSYFFELINRSMIQPEHLTDYESCRVHDMVLDLIKSLSTEENFVTTFDGYQHADLPEKVRRLSLQNNEEGHNLTDATLNLSHLRSVIVFPGATNLMPPLSNLPVLRVLDVEHCRDLENHHIAGVEKLFHLRYLGLRDTNVTELPKEVGNLHCLHTLDLSHTSITELPSTAIRLKQLVRLYIEDSVKLPKGIGKLKLLQVLSSIGVSSSPDIVGELGYLTELRVLHISLISGTGTWCKSYEKPLLDSMFKLQKIQELHIQSFGVPTDFIADLGWFPQHLKDFLGGGISRLPSWMNSSLSNLYQINMSLYILRQEDLQNLGLIPILRYLYLSIVEIESTEERLVIGTGSSQFQCLYHLSFDSCRAMGLMFVQGALPNLVSLDITLRARETKDLYGDFNIGLENLCSVRKVSVKIRCTSCRRCEVDSAEADIRKAIVNNPNNPMFDITRCYEYELDEEQHHDNLEAIEEEEQLQSMPQRVGPWGGEGNRNHDIVVAPWRMECVKVSWGQVVDGIGFSYLDKNGKQHTTPLWGGVGGSVRMVCHFSRKTSILVLSKNSFPRQTSCLFLSL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0494100 | SBH | 3.602273 | 2.888683 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0492900 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0014590 | SBH | 0.131610 | 3.387070 | 3.701980 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0014550 | SBH | 0.124482 | 2.079519 | 1.518292 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0014240 | SBH | 0.0 | 0.263177 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0014570 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0274100 | SBH | 0.624932 | 2.9376 | 1.4737915 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0287900 | SBH | 6.0634705 | 2.173418 | 12.327079 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0014730 | RBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0014710 | SBH | 0.604820 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0014350 | SBH | 4.941029 | 10.167318 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0070840 | SBH | 0.0 | 0.0 | 0.371179 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0014530 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G014230 | SBH | 0.0 | 6.142441 | 0.051285 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0014490 | SBH | 0.000000 | 60.746300 | 0.0 |
