Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_12g0012560 | OGI:12048020 | 1/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr12:16955939-16958353 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgactgtgctgtctgtccttgcttcatcaatactgtcaaaggtcaccacgtttgctgttgaatatgctctcgacgacattaaatttgcttggaatgttaagagtgagctggaaaagttgaaaaactcgttgggagctatttgtgctgttctgaaagatgcagaaaggaagcaatctacacacagttcacttaagcattggcttgaaaatctcaaagatgttgtctatgacatagatgatgttctggatgatgttgggacacgagtgttgcagcagaaagttagaaaaggtgaaatctgtacttattttgctcaactaaccatctttccttttggactgggaagaaaaataagaaaggtccgtgaaaggctaaatgaaatagctgcgcttaaaagagattttgaattgaaagaagaaccaatagacacaccttcagatcaatttgcccagagagaaacacactcccttataggtgagcaaaatatttttggaagagataaagctaaaaatgatattgtcaagatgatttcagaagctgctgaatctaattctaataccctgtcaatgcttccactaattggaattggaggtgtaggcaagactgccctagcaaaactggtatttaatgataaatcaaccaaagataagtttgataagatgctatgggcatctgtatctaatacgtttgatctaaaacatattgtaaatataatcatacaatctgatagcggtgaaagcaataaccaattaaccctagaagcattaacaaagaaacttcatgagcttttaagggacaagagatacttgctagtgttagatgacatatcaaatgataatgtcaactgggaagaattgataaacctgctaccgagtggtagaagtggatgcatgattttaatcactacacgtctttcaaaaattgcatcagaattgaagacattagaaccatacgaagtgccaaaacttccacatgaagaatgcaggaaaatatttgttcgatatgctttcagaggagaaaaggcgaaggatagagagttactaaaaattggagaatccattgtacagaaatgtgatggccttcctttagcagctagaacattgggatccctattgttcagaaaagacatttctatgtggcaagaagtaaaggaaaataatttgctgagtactgggaaaggtaaagatgatatcttgtcagtattaaaactcagttacgatgcacttccatctgatttaaaaacttgtttttcctggttatccacttttccaaaggactatgatattttcagagaacttataataatgtattggatggcaatgggtctattgaatccagctagtcgaactaaggaggcaataagagtgggagagaaatactttaatgagcttgctggaagatctcttttccaggactatgtttttaatcatgatggcagcatctcacattgcaaaatgcatagccttgttcatgatctagcaatatctgtgtctcaaaatgagcatgcaattgttggctgtgaaaactttagtgccactgaaagagttaagaacctagtgtgggaccacaaagacttcacaacaaaactaaaatttccaaaacaactgagaagggcaagaaaggctaggacatttgcatgtaggcataactatggtactgtgggcaaatcctttcttgaagatctcttagcaaccttcacactcctaagagtcttggttttctctgaagttgagtttgaggagttatcaagttcaattggaaatttgaagcacctaaggtacctagaccttcaatggaatatgaagataaaattcctacccaattccctgtgtaagctggtgaatttacaaacacttcaactcgcttggtgcaaagaactggaggagctgccaaaagatgtgaaaagacttgtcagcttgaggtacttgattctcacatctaagcaacaatatttacctaaagatgcccttggtggttggacttccatggtatttctacagattaatgcctgcccaatgttgacatcactaacagaaggatttggcagcctcagtgcactcagagagctatttgtctttaattgtccaaagttgccatctctcccctccagcatgaaccggcttgtcacccttcagaaattggtgattcataactgtgatgagttagatttgatggaatcagaggaagcaatgggtgggctgaatagtcttgaatcaattgaacttgcaggacttcccaagtttaagacctttccagatagctttgcatcagcttcttcctctcttcaatacctgaaggttagtgactgcccacaattcgaggagttgccagatttcattaagagattctcctctctgaagaaaattgagatccctaaaagccgtgcaccttccccttccactggaacctgggcatag
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| CDS seq | atgactgtgctgtctgtccttgcttcatcaatactgtcaaaggtcaccacgtttgctgttgaatatgctctcgacgacattaaatttgcttggaatgttaagagtgagctggaaaagttgaaaaactcgttgggagctatttgtgctgttctgaaagatgcagaaaggaagcaatctacacacagttcacttaagcattggcttgaaaatctcaaagatgttgtctatgacatagatgatgttctggatgatgttgggacacgagtgttgcagcagaaagttagaaaaggtgaaatctgtacttattttgctcaactaaccatctttccttttggactgggaagaaaaataagaaaggtccgtgaaaggctaaatgaaatagctgcgcttaaaagagattttgaattgaaagaagaaccaatagacacaccttcagatcaatttgcccagagagaaacacactcccttataggtgagcaaaatatttttggaagagataaagctaaaaatgatattgtcaagatgatttcagaagctgctgaatctaattctaataccctgtcaatgcttccactaattggaattggaggtgtaggcaagactgccctagcaaaactggtatttaatgataaatcaaccaaagataagtttgataagatgctatgggcatctgtatctaatacgtttgatctaaaacatattgtaaatataatcatacaatctgatagcggtgaaagcaataaccaattaaccctagaagcattaacaaagaaacttcatgagcttttaagggacaagagatacttgctagtgttagatgacatatcaaatgataatgtcaactgggaagaattgataaacctgctaccgagtggtagaagtggatgcatgattttaatcactacacgtctttcaaaaattgcatcagaattgaagacattagaaccatacgaagtgccaaaacttccacatgaagaatgcaggaaaatatttgttcgatatgctttcagaggagaaaaggcgaaggatagagagttactaaaaattggagaatccattgtacagaaatgtgatggccttcctttagcagctagaacattgggatccctattgttcagaaaagacatttctatgtggcaagaagtaaaggaaaataatttgctgagtactgggaaaggtaaagatgatatcttgtcagtattaaaactcagttacgatgcacttccatctgatttaaaaacttgtttttcctggttatccacttttccaaaggactatgatattttcagagaacttataataatgtattggatggcaatgggtctattgaatccagctagtcgaactaaggaggcaataagagtgggagagaaatactttaatgagcttgctggaagatctcttttccaggactatgtttttaatcatgatggcagcatctcacattgcaaaatgcatagccttgttcatgatctagcaatatctgtgtctcaaaatgagcatgcaattgttggctgtgaaaactttagtgccactgaaagagttaagaacctagtgtgggaccacaaagacttcacaacaaaactaaaatttccaaaacaactgagaagggcaagaaaggctaggacatttgcatgtaggcataactatggtactgtgggcaaatcctttcttgaagatctcttagcaaccttcacactcctaagagtcttggttttctctgaagttgagtttgaggagttatcaagttcaattggaaatttgaagcacctaaggtacctagaccttcaatggaatatgaagataaaattcctacccaattccctgtgtaagctggtgaatttacaaacacttcaactcgcttggtgcaaagaactggaggagctgccaaaagatgtgaaaagacttgtcagcttgaggtacttgattctcacatctaagcaacaatatttacctaaagatgcccttggtggttggacttccatggtatttctacagattaatgcctgcccaatgttgacatcactaacagaaggatttggcagcctcagtgcactcagagagctatttgtctttaattgtccaaagttgccatctctcccctccagcatgaaccggcttgtcacccttcagaaattggtgattcataactgtgatgagttagatttgatggaatcagaggaagcaatgggtgggctgaatagtcttgaatcaattgaacttgcaggacttcccaagtttaagacctttccagatagctttgcatcagcttcttcctctcttcaatacctgaaggttagtgactgcccacaattcgaggagttgccagatttcattaagagattctcctctctgaagaaaattgagatccctaaaagccgtgcaccttccccttccactggaacctgggcatag
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| Protein seq | MTVLSVLASSILSKVTTFAVEYALDDIKFAWNVKSELEKLKNSLGAICAVLKDAERKQSTHSSLKHWLENLKDVVYDIDDVLDDVGTRVLQQKVRKGEICTYFAQLTIFPFGLGRKIRKVRERLNEIAALKRDFELKEEPIDTPSDQFAQRETHSLIGEQNIFGRDKAKNDIVKMISEAAESNSNTLSMLPLIGIGGVGKTALAKLVFNDKSTKDKFDKMLWASVSNTFDLKHIVNIIIQSDSGESNNQLTLEALTKKLHELLRDKRYLLVLDDISNDNVNWEELINLLPSGRSGCMILITTRLSKIASELKTLEPYEVPKLPHEECRKIFVRYAFRGEKAKDRELLKIGESIVQKCDGLPLAARTLGSLLFRKDISMWQEVKENNLLSTGKGKDDILSVLKLSYDALPSDLKTCFSWLSTFPKDYDIFRELIIMYWMAMGLLNPASRTKEAIRVGEKYFNELAGRSLFQDYVFNHDGSISHCKMHSLVHDLAISVSQNEHAIVGCENFSATERVKNLVWDHKDFTTKLKFPKQLRRARKARTFACRHNYGTVGKSFLEDLLATFTLLRVLVFSEVEFEELSSSIGNLKHLRYLDLQWNMKIKFLPNSLCKLVNLQTLQLAWCKELEELPKDVKRLVSLRYLILTSKQQYLPKDALGGWTSMVFLQINACPMLTSLTEGFGSLSALRELFVFNCPKLPSLPSSMNRLVTLQKLVIHNCDELDLMESEEAMGGLNSLESIELAGLPKFKTFPDSFASASSSLQYLKVSDCPQFEELPDFIKRFSSLKKIEIPKSRAPSPSTGTWA |
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| Function | Putative disease resistance protein RGA1 [UniProtKB/Swiss-Prot:Q7XA42] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_12g0012560 | OsLima_12g0012560.01 | Chr12 | 16955939 | 16958353 | + | NAM | ||
| CDS seq | atgactgtgctgtctgtccttgcttcatcaatactgtcaaaggtcaccacgtttgctgttgaatatgctctcgacgacattaaatttgcttggaatgttaagagtgagctggaaaagttgaaaaactcgttgggagctatttgtgctgttctgaaagatgcagaaaggaagcaatctacacacagttcacttaagcattggcttgaaaatctcaaagatgttgtctatgacatagatgatgttctggatgatgttgggacacgagtgttgcagcagaaagttagaaaaggtgaaatctgtacttattttgctcaactaaccatctttccttttggactgggaagaaaaataagaaaggtccgtgaaaggctaaatgaaatagctgcgcttaaaagagattttgaattgaaagaagaaccaatagacacaccttcagatcaatttgcccagagagaaacacactcccttataggtgagcaaaatatttttggaagagataaagctaaaaatgatattgtcaagatgatttcagaagctgctgaatctaattctaataccctgtcaatgcttccactaattggaattggaggtgtaggcaagactgccctagcaaaactggtatttaatgataaatcaaccaaagataagtttgataagatgctatgggcatctgtatctaatacgtttgatctaaaacatattgtaaatataatcatacaatctgatagcggtgaaagcaataaccaattaaccctagaagcattaacaaagaaacttcatgagcttttaagggacaagagatacttgctagtgttagatgacatatcaaatgataatgtcaactgggaagaattgataaacctgctaccgagtggtagaagtggatgcatgattttaatcactacacgtctttcaaaaattgcatcagaattgaagacattagaaccatacgaagtgccaaaacttccacatgaagaatgcaggaaaatatttgttcgatatgctttcagaggagaaaaggcgaaggatagagagttactaaaaattggagaatccattgtacagaaatgtgatggccttcctttagcagctagaacattgggatccctattgttcagaaaagacatttctatgtggcaagaagtaaaggaaaataatttgctgagtactgggaaaggtaaagatgatatcttgtcagtattaaaactcagttacgatgcacttccatctgatttaaaaacttgtttttcctggttatccacttttccaaaggactatgatattttcagagaacttataataatgtattggatggcaatgggtctattgaatccagctagtcgaactaaggaggcaataagagtgggagagaaatactttaatgagcttgctggaagatctcttttccaggactatgtttttaatcatgatggcagcatctcacattgcaaaatgcatagccttgttcatgatctagcaatatctgtgtctcaaaatgagcatgcaattgttggctgtgaaaactttagtgccactgaaagagttaagaacctagtgtgggaccacaaagacttcacaacaaaactaaaatttccaaaacaactgagaagggcaagaaaggctaggacatttgcatgtaggcataactatggtactgtgggcaaatcctttcttgaagatctcttagcaaccttcacactcctaagagtcttggttttctctgaagttgagtttgaggagttatcaagttcaattggaaatttgaagcacctaaggtacctagaccttcaatggaatatgaagataaaattcctacccaattccctgtgtaagctggtgaatttacaaacacttcaactcgcttggtgcaaagaactggaggagctgccaaaagatgtgaaaagacttgtcagcttgaggtacttgattctcacatctaagcaacaatatttacctaaagatgcccttggtggttggacttccatggtatttctacagattaatgcctgcccaatgttgacatcactaacagaaggatttggcagcctcagtgcactcagagagctatttgtctttaattgtccaaagttgccatctctcccctccagcatgaaccggcttgtcacccttcagaaattggtgattcataactgtgatgagttagatttgatggaatcagaggaagcaatgggtgggctgaatagtcttgaatcaattgaacttgcaggacttcccaagtttaagacctttccagatagctttgcatcagcttcttcctctcttcaatacctgaaggttagtgactgcccacaattcgaggagttgccagatttcattaagagattctcctctctgaagaaaattgagatccctaaaagccgtgcaccttccccttccactggaacctgggcatag
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| Protein seq | MTVLSVLASSILSKVTTFAVEYALDDIKFAWNVKSELEKLKNSLGAICAVLKDAERKQSTHSSLKHWLENLKDVVYDIDDVLDDVGTRVLQQKVRKGEICTYFAQLTIFPFGLGRKIRKVRERLNEIAALKRDFELKEEPIDTPSDQFAQRETHSLIGEQNIFGRDKAKNDIVKMISEAAESNSNTLSMLPLIGIGGVGKTALAKLVFNDKSTKDKFDKMLWASVSNTFDLKHIVNIIIQSDSGESNNQLTLEALTKKLHELLRDKRYLLVLDDISNDNVNWEELINLLPSGRSGCMILITTRLSKIASELKTLEPYEVPKLPHEECRKIFVRYAFRGEKAKDRELLKIGESIVQKCDGLPLAARTLGSLLFRKDISMWQEVKENNLLSTGKGKDDILSVLKLSYDALPSDLKTCFSWLSTFPKDYDIFRELIIMYWMAMGLLNPASRTKEAIRVGEKYFNELAGRSLFQDYVFNHDGSISHCKMHSLVHDLAISVSQNEHAIVGCENFSATERVKNLVWDHKDFTTKLKFPKQLRRARKARTFACRHNYGTVGKSFLEDLLATFTLLRVLVFSEVEFEELSSSIGNLKHLRYLDLQWNMKIKFLPNSLCKLVNLQTLQLAWCKELEELPKDVKRLVSLRYLILTSKQQYLPKDALGGWTSMVFLQINACPMLTSLTEGFGSLSALRELFVFNCPKLPSLPSSMNRLVTLQKLVIHNCDELDLMESEEAMGGLNSLESIELAGLPKFKTFPDSFASASSSLQYLKVSDCPQFEELPDFIKRFSSLKKIEIPKSRAPSPSTGTWA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0489800 | SBH | 0.071512 | 0.0 | 0.173627 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g29290 | SBH | 0.063515 | 0.0 | 0.059886 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0489800 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0013050 | SBH | 0.148129 | 8.317088 | 5.414532 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0013170 | SBH | 0.250322 | 1.257296 | 0.496925 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0013080 | SBH | 0.164126 | 4.344239 | 5.772913 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0012840 | SBH | 0.0 | 0.022988 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0012570 | SBH | 1.631858 | 7.405874 | 4.507374 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0241700 | SBH | 1.1415525 | 5.387933 | 0.916849 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0012760 | SBH | 0.0 | 0.125018 | 0.187349 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0261000 | SBH | 0.427013 | 3.092329 | 3.2352155 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0012620 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0012920 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0012770 | SBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0012740 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0013000 | SBH | 0.0 | 0.810599 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G012690 | SBH | 0.382735 | 1.313537 | 1.288123 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0012560 | SBH | 0.099196 | 3.278061 | 0.491494 |
