Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_11g0023040 | OGI:01040660 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr11:28698544-28701724 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgctgtcgtcactgtgggtttcagcaaccttgttgatcttaattggcttgcttgccaatttgaggagtagcttgatcaaagttttttttgtttatactaattggaggtattttcctacacctcgcaagcactgtaatgagttcaatactaatgaactcatgaatcatgggtaaaatcagagtcatatgttacctaaaaaagaaagccagagtcatatgggtggagggccaagtcctacctaaaatttgagagctacatatgaatgctatccggttttggagttgagggacgtaaattaaaccgagtgatttttttccttgagtaattaagcagcaagccaggagttgagggaatttaaaaaatatatatattccatcataatatatttctcatgtgcataagatatttttgttgatctatgttatatctctttgtttcttttagtacacacaactgtcataattaaagatcagtgtcgtatgcttatggtttatttgcactatttttcagggtgttatcttatcagaactgcagcggacgactacttcgattacaatttgtcaattcatgcagtaaagataagtactcgacgcacaaaatagaagcagatgatgaaagcccccttcaggtagccatatatgatcataacaacaggatcgtaacaagtgaaccattctcttcaatgagagttcagattgtagtcatcaatggcgactttgaccatgaccatagaggacagtggaccaaaaaggacttcgatactaaaatagtacatggacgacctcagaaaggacaactgctgtctggggagctgaaatttaggctgcaaaatggtgtgggttatctcagtagtgccaagtttcaagacaattctagttttgttccaagtaaaaagttcaagttaggggtcatggcagctgatgaaagaatctcagaaagaattcaagaaggaataactgaatcttttgctgtgaaggatgttcgaggatacagtgagttcacactaatacttatactacctctattttaaaatatatactccagtaacttgtagtgttcacattttttcctaaaatataacagcttctaacttctaaagtggacattttgttgtgtaggagtagtatccaaaaaacccctacacaccaatgactttgtcttctgcaccaagcccaagacatcaagccaaagacatagtaatagtagtagtatagactttttacccctatccttaatacctatgcacaactcttaaagtttctatattttggatgaggagagtatatcctactaatctgtgttgttatctctattgcacatcaattaacctggaaggcgcaaacagaatgagtatagtaagaacaatttagggattatagtaactaatcggtaacccatgcattcgcacgggctatttatattagtaatattacacaaattatcaatattaaaactctgttcaatagaactaccttgaaaacttagccaccattcattattttcagaaacaacattttcatatgtcaatattgttgaaagcataaaagctaactatatcgaatgcctttgtctgcagtagcaaagaagaatcccaatccatccccacgtgatgctgtatataaactgagtaaaattgcaaagagcggtgacaggcacaagttactagagcagaatggtatcaagacagtggaggacttcttatctttctaccagaagagtccgggtgatctgcgtaaagtatgagaatgcattattactaaattattttgctaactaattgttgtcctatacaatgtcaccaacaatttctttttaatatcaccctatgtagattttgggaaagatatctgaccaagattgggatttaatcattggtcatgctcagaaatgtaatccaagaccaggagtatactctagtttccttcaagagagcaatgtgtctcacgaacatcaggctctttttggaagcaatggaaggtattaccttcagggatcatgctcaatgcatccaagtcatatgctacaaggtgggttcgacgtacctatccattcatggtttgctgctgaaactagtttctgtaaaatgcttcttgattaattagttccatatttccgtgggcatcgtaataaaaatttattgattcttcaaaatgtgacagcacaacttgatgttcaaggaacacaacagcaaatttcttcagagtataatgggctatcatctggtggattgccagtgactgtgccaaatagctccaacttccaaccagaaactttgtaccagaacttgatgcaccatggtaattggactttcctttgtatttgcatatatcatctgttttctgtatgatttatcatttccaaagcaagtagatttactctgaactttctacaggacaacttgagggcacccaagttgtcggccaacaagtttcatctgtgggaaatgaggttctgcctgcttcatccctggatgtgtcgagctcgcagcagcagcaacattctttggagtgcaacagaacgcctgatcaacttgatggtagcgattttcctgctgtatcatttttcgcctgatcaacgttttttagaagttctgatttctcatatttctccaatataataggtaatggactctcacatgttaatctgtccgattggcaaccgttgcaagaactttggctcgatggccatgtagacacgcagtgggattcttcgggaaatgcactgagtgcatccgcggaaggtttggtgaatgaatttacggggtggaggcagccatctatcccggtaactcctggttcgggaggttcctgcagtgcagccgagcaaaactactggggtcattcgcctgtcagtgaagcaggcagcataagctacaatggcatttctgctgtcagtgaagcagctggcaacaggagccacggccacaggggactttcaccttcaccttcacctgccaggggagccgcaggcagtaggagacacagggcactctcattttcacctgccaggggagcaggcaatgtaagacgcagggctctttcattttcacctggcaggggagcacgcagtagcagcaacggatggccaccgctacctccaggtccaccgtcctggtggacagacaataccagcaacacaagtgcagattgcacggatgaagaatattgccttgacggttga
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| CDS seq | atgctgtcgtcactggtgttatcttatcagaactgcagcggacgactacttcgattacaatttgtcaattcatgcagtaaagataagtactcgacgcacaaaatagaagcagatgatgaaagcccccttcaggtagccatatatgatcataacaacaggatcgtaacaagtgaaccattctcttcaatgagagttcagattgtagtcatcaatggcgactttgaccatgaccatagaggacagtggaccaaaaaggacttcgatactaaaatagtacatggacgacctcagaaaggacaactgctgtctggggagctgaaatttaggctgcaaaatggtgtgggttatctcagtagtgccaagtttcaagacaattctagttttgttccaatagcaaagaagaatcccaatccatccccacgtgatgctgtatataaactgagtaaaattgcaaagagcggtgacaggcacaagttactagagcagaatggtatcaagacagtggaggacttcttatctttctaccagaagagtccgggtgatctgcgtaaaattttgggaaagatatctgaccaagattgggatttaatcattggtcatgctcagaaatgtaatccaagaccaggagtatactctagtttccttcaagagagcaatgtgtctcacgaacatcaggctctttttggaagcaatggaagggatcatgctcaatgcatccaagtcatatgctacaaggtgggttcgacgtacctatccattcatgttccatatttccgtgggcatcgtaataaaaatttattgattcttcaaaatgtgacagcacaacttgatgttcaaggaacacaacagcaaatttcttcagagtataatgggctatcatctggtggattgccagtgactgtgccaaatagctccaacttccaaccagaaactttgtaccagaacttgatgcaccatggacaacttgagggcacccaagttgtcggccaacaagtttcatctgtgggaaatgaggttctgcctgcttcatccctggatgtgtcgagctcgcagcagcagcaacattctttggagtgcaacagaacgcctgatcaacttgatggtaatggactctcacatgttaatctgtccgattggcaaccgttgcaagaactttggctcgatggccatgtagacacgcagtgggattcttcgggaaatgcactgagtgcatccgcggaaggtttggtgaatgaatttacggggtggaggcagccatctatcccggtaactcctggttcgggaggttcctgcagtgcagccgagcaaaactactggggtcattcgcctgtcagtgaagcaggcagcataagctacaatggcatttctgctgtcagtgaagcagctggcaacaggagccacggccacaggggactttcaccttcaccttcacctgccaggggagccgcaggcagtaggagacacagggcactctcattttcacctgccaggggagcaggcaatgtaagacgcagggctctttcattttcacctggcaggggagcacgcagtagcagcaacggatggccaccgctacctccaggtccaccgtcctggtggacagacaataccagcaacacaagtgcagattgcacggatgaagaatattgccttgacggttga
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| Protein seq | MLSSLVLSYQNCSGRLLRLQFVNSCSKDKYSTHKIEADDESPLQVAIYDHNNRIVTSEPFSSMRVQIVVINGDFDHDHRGQWTKKDFDTKIVHGRPQKGQLLSGELKFRLQNGVGYLSSAKFQDNSSFVPIAKKNPNPSPRDAVYKLSKIAKSGDRHKLLEQNGIKTVEDFLSFYQKSPGDLRKILGKISDQDWDLIIGHAQKCNPRPGVYSSFLQESNVSHEHQALFGSNGRDHAQCIQVICYKVGSTYLSIHVPYFRGHRNKNLLILQNVTAQLDVQGTQQQISSEYNGLSSGGLPVTVPNSSNFQPETLYQNLMHHGQLEGTQVVGQQVSSVGNEVLPASSLDVSSSQQQQHSLECNRTPDQLDGNGLSHVNLSDWQPLQELWLDGHVDTQWDSSGNALSASAEGLVNEFTGWRQPSIPVTPGSGGSCSAAEQNYWGHSPVSEAGSISYNGISAVSEAAGNRSHGHRGLSPSPSPARGAAGSRRHRALSFSPARGAGNVRRRALSFSPGRGARSSSNGWPPLPPGPPSWWTDNTSNTSADCTDEEYCLDG |
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| Function | Calmodulin-binding protein 60 B [UniProtKB/Swiss-Prot:Q9FKL6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_11g0023040 | OsLima_11g0023040.01 | Chr11 | 28698544 | 28701724 | + | NAM | ||
| CDS seq | atgctgtcgtcactggtgttatcttatcagaactgcagcggacgactacttcgattacaatttgtcaattcatgcagtaaagataagtactcgacgcacaaaatagaagcagatgatgaaagcccccttcaggtagccatatatgatcataacaacaggatcgtaacaagtgaaccattctcttcaatgagagttcagattgtagtcatcaatggcgactttgaccatgaccatagaggacagtggaccaaaaaggacttcgatactaaaatagtacatggacgacctcagaaaggacaactgctgtctggggagctgaaatttaggctgcaaaatggtgtgggttatctcagtagtgccaagtttcaagacaattctagttttgttccaatagcaaagaagaatcccaatccatccccacgtgatgctgtatataaactgagtaaaattgcaaagagcggtgacaggcacaagttactagagcagaatggtatcaagacagtggaggacttcttatctttctaccagaagagtccgggtgatctgcgtaaaattttgggaaagatatctgaccaagattgggatttaatcattggtcatgctcagaaatgtaatccaagaccaggagtatactctagtttccttcaagagagcaatgtgtctcacgaacatcaggctctttttggaagcaatggaagggatcatgctcaatgcatccaagtcatatgctacaaggtgggttcgacgtacctatccattcatgttccatatttccgtgggcatcgtaataaaaatttattgattcttcaaaatgtgacagcacaacttgatgttcaaggaacacaacagcaaatttcttcagagtataatgggctatcatctggtggattgccagtgactgtgccaaatagctccaacttccaaccagaaactttgtaccagaacttgatgcaccatggacaacttgagggcacccaagttgtcggccaacaagtttcatctgtgggaaatgaggttctgcctgcttcatccctggatgtgtcgagctcgcagcagcagcaacattctttggagtgcaacagaacgcctgatcaacttgatggtaatggactctcacatgttaatctgtccgattggcaaccgttgcaagaactttggctcgatggccatgtagacacgcagtgggattcttcgggaaatgcactgagtgcatccgcggaaggtttggtgaatgaatttacggggtggaggcagccatctatcccggtaactcctggttcgggaggttcctgcagtgcagccgagcaaaactactggggtcattcgcctgtcagtgaagcaggcagcataagctacaatggcatttctgctgtcagtgaagcagctggcaacaggagccacggccacaggggactttcaccttcaccttcacctgccaggggagccgcaggcagtaggagacacagggcactctcattttcacctgccaggggagcaggcaatgtaagacgcagggctctttcattttcacctggcaggggagcacgcagtagcagcaacggatggccaccgctacctccaggtccaccgtcctggtggacagacaataccagcaacacaagtgcagattgcacggatgaagaatattgccttgacggttga
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| Protein seq | MLSSLVLSYQNCSGRLLRLQFVNSCSKDKYSTHKIEADDESPLQVAIYDHNNRIVTSEPFSSMRVQIVVINGDFDHDHRGQWTKKDFDTKIVHGRPQKGQLLSGELKFRLQNGVGYLSSAKFQDNSSFVPIAKKNPNPSPRDAVYKLSKIAKSGDRHKLLEQNGIKTVEDFLSFYQKSPGDLRKILGKISDQDWDLIIGHAQKCNPRPGVYSSFLQESNVSHEHQALFGSNGRDHAQCIQVICYKVGSTYLSIHVPYFRGHRNKNLLILQNVTAQLDVQGTQQQISSEYNGLSSGGLPVTVPNSSNFQPETLYQNLMHHGQLEGTQVVGQQVSSVGNEVLPASSLDVSSSQQQQHSLECNRTPDQLDGNGLSHVNLSDWQPLQELWLDGHVDTQWDSSGNALSASAEGLVNEFTGWRQPSIPVTPGSGGSCSAAEQNYWGHSPVSEAGSISYNGISAVSEAAGNRSHGHRGLSPSPSPARGAAGSRRHRALSFSPARGAGNVRRRALSFSPGRGARSSSNGWPPLPPGPPSWWTDNTSNTSADCTDEEYCLDG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.073110 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0663100 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g44170 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0663100 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0022910 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0022950 | RBH | 0.0 | 0.000000 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0022710 | RBH | 0.100526 | 0.403067 | 0.573230 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0022340 | SBH | 0.000000 | 0.012757 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0022610 | SBH | 0.0 | 1.171068 | 1.044557 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0397200 | SBH | 0 | 4.6595845 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0023520 | SBH | 0.0 | 0.000000 | 0.019496 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0419900 | SBH | 0.4964785 | 1.2705415 | 0.196498 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0023070 | SBH | 0.018341 | 0.027610 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0023220 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0022860 | SBH | 0.000000 | 2.070718 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0022400 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0022410 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G022730 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0023170 | SBH | 0.185716 | 5.447343 | 0.000000 |
