Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_11g0019380 | OGI:11066050 | 14/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr11:24790877-24792636 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | aatagctcaagcaaagaagctttcagttcagagttcagacacacagtgctcgccttgagctgccacccattatggccgccggattcgtcgacgacgaggggcggcggcggagcagcggcgggagggtcacggcgttcgtggcgctgtcctgcgccacggcggcgatgggcggcgccatctacggctacgacataagcatcgccggcggcgtgtcgtccatggagccgttcctgagggacttcttcccagacgtgctccggcggatggcggacagcggcggcggcggcgcgcgccgcgtcagcaactactgcaagttcgacagccagctgctgacgctcttcacctcgtcgctctacatctccggccttctcaccgccgtgctcctcgcgtcgtgggtcacggccagccgcggccgccgcgcgtccatgatcctcggcggcttcgcctacatcgccggcgcggcggtcagcggcgccgccgtcaacgtgtccatggccatcctcggcagggccctcctcggcgtcggcctcggcttcaccacccaggtcacaacactgaaaaaacaaaatatatattctcgaattcttgatgtgccatttggacaaatcttgtgcaaagttttctgaattttgcaagttcttgaaacattttgcagtctgtgccactctacatggctgaaatggcaccggcgcgataccggggagcattcagcaacggcatccagttcagcctgtgtctcggagctctcgccgccacgacggtgaacttcgccgtggagaagatcaggggaggctgggggtggaggctctcgctggcgctggccggcgtccccgccgtgttcctcaccgtcggcgccgtcttcttgccggagacgccgaacagCctcatccagcaaggcaaggaccgtgacacggtcaaggcgttgctgcagaggatcagaggcgtcgacgccgtcgtcgacgacgagctggacgagatcgtcgcCGCGAgcgccgccgcggcagcggcgcagggagagaacggcctgtggctgatcctgtcgcggcgccggtacaggccgcagctcgccatggccgtcctaataccggcgttcacgcagctgacgggcatcaacgcgatcgggttctacctgccggtgctgctgcgcaccgtcggcatgggcgagagcgcggcgctgctcaccacggtgatcctggtggtcgtctcctcggcgtcgacgctcgcgtccatgttcctcgtcgaccgcttcggcaggcgggcgctgctcctcgccggcggcgcccagatgctcgtctcggaggcgctcatcggcggcgtcatggcggcgaagctgggcgacgacggcgcgccgagcaaggcgtgcgccacgctgctcgtcgtcctcatcggcgtctactcgacgggcttcgggtggtcgtggggtcccctgagctggctggtgcccagcgaggtcctgccgCtggaggtccggtcggcggggcagagcgtggcggtggcgacgtgcttcgcgctcaccgtgctcgtcgcgcagtgctttctcgccgcgctgtgccggatgaaggcgtggatcttcttcttcttcgCcgggtggatcgtcgccatgacggctttcgtctacttcttcttgccggagacgaaggggattccgatcgaacaggtaggtagcGTgtgggaggagcactggttctggaggaggatagttgggactgatgAaatccatgcaagttccaagctgtcaaaatagattgatgaattaaaga
More
|
||||||||||
| CDS seq | atggccgccggattcgtcgacgacgaggggcggcggcggagcagcggcgggagggtcacggcgttcgtggcgctgtcctgcgccacggcggcgatgggcggcgccatctacggctacgacataagcatcgccggcggcgtgtcgtccatggagccgttcctgagggacttcttcccagacgtgctccggcggatggcggacagcggcggcggcggcgcgcgccgcgtcagcaactactgcaagttcgacagccagctgctgacgctcttcacctcgtcgctctacatctccggccttctcaccgccgtgctcctcgcgtcgtgggtcacggccagccgcggccgccgcgcgtccatgatcctcggcggcttcgcctacatcgccggcgcggcggtcagcggcgccgccgtcaacgtgtccatggccatcctcggcagggccctcctcggcgtcggcctcggcttcaccacccagtctgtgccactctacatggctgaaatggcaccggcgcgataccggggagcattcagcaacggcatccagttcagcctgtgtctcggagctctcgccgccacgacggtgaacttcgccgtggagaagatcaggggaggctgggggtggaggctctcgctggcgctggccggcgtccccgccgtgttcctcaccgtcggcgccgtcttcttgccggagacgccgaacagCctcatccagcaaggcaaggaccgtgacacggtcaaggcgttgctgcagaggatcagaggcgtcgacgccgtcgtcgacgacgagctggacgagatcgtcgcCGCGAgcgccgccgcggcagcggcgcagggagagaacggcctgtggctgatcctgtcgcggcgccggtacaggccgcagctcgccatggccgtcctaataccggcgttcacgcagctgacgggcatcaacgcgatcgggttctacctgccggtgctgctgcgcaccgtcggcatgggcgagagcgcggcgctgctcaccacggtgatcctggtggtcgtctcctcggcgtcgacgctcgcgtccatgttcctcgtcgaccgcttcggcaggcgggcgctgctcctcgccggcggcgcccagatgctcgtctcggaggcgctcatcggcggcgtcatggcggcgaagctgggcgacgacggcgcgccgagcaaggcgtgcgccacgctgctcgtcgtcctcatcggcgtctactcgacgggcttcgggtggtcgtggggtcccctgagctggctggtgcccagcgaggtcctgccgCtggaggtccggtcggcggggcagagcgtggcggtggcgacgtgcttcgcgctcaccgtgctcgtcgcgcagtgctttctcgccgcgctgtgccggatgaaggcgtggatcttcttcttcttcgCcgggtggatcgtcgccatgacggctttcgtctacttcttcttgccggagacgaaggggattccgatcgaacaggtaggtagcGTgtgggaggagcactggttctggaggaggatagttgggactgatgAaatccatgcaagttccaagctgtcaaaatag
More
|
||||||||||
| Protein seq | MAAGFVDDEGRRRSSGGRVTAFVALSCATAAMGGAIYGYDISIAGGVSSMEPFLRDFFPDVLRRMADSGGGGARRVSNYCKFDSQLLTLFTSSLYISGLLTAVLLASWVTASRGRRASMILGGFAYIAGAAVSGAAVNVSMAILGRALLGVGLGFTTQSVPLYMAEMAPARYRGAFSNGIQFSLCLGALAATTVNFAVEKIRGGWGWRLSLALAGVPAVFLTVGAVFLPETPNSLIQQGKDRDTVKALLQRIRGVDAVVDDELDEIVAASAAAAAAQGENGLWLILSRRRYRPQLAMAVLIPAFTQLTGINAIGFYLPVLLRTVGMGESAALLTTVILVVVSSASTLASMFLVDRFGRRALLLAGGAQMLVSEALIGGVMAAKLGDDGAPSKACATLLVVLIGVYSTGFGWSWGPLSWLVPSEVLPLEVRSAGQSVAVATCFALTVLVAQCFLAALCRMKAWIFFFFAGWIVAMTAFVYFFLPETKGIPIEQVGSVWEEHWFWRRIVGTDEIHASSKLSK |
||||||||||
| Function | Hexose carrier protein HEX6 [UniProtKB/Swiss-Prot:Q07423] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_11g0019380 | OsLima_11g0019380.01 | Chr11 | 24790877 | 24792636 | + | NAM | ||
| CDS seq | atggccgccggattcgtcgacgacgaggggcggcggcggagcagcggcgggagggtcacggcgttcgtggcgctgtcctgcgccacggcggcgatgggcggcgccatctacggctacgacataagcatcgccggcggcgtgtcgtccatggagccgttcctgagggacttcttcccagacgtgctccggcggatggcggacagcggcggcggcggcgcgcgccgcgtcagcaactactgcaagttcgacagccagctgctgacgctcttcacctcgtcgctctacatctccggccttctcaccgccgtgctcctcgcgtcgtgggtcacggccagccgcggccgccgcgcgtccatgatcctcggcggcttcgcctacatcgccggcgcggcggtcagcggcgccgccgtcaacgtgtccatggccatcctcggcagggccctcctcggcgtcggcctcggcttcaccacccagtctgtgccactctacatggctgaaatggcaccggcgcgataccggggagcattcagcaacggcatccagttcagcctgtgtctcggagctctcgccgccacgacggtgaacttcgccgtggagaagatcaggggaggctgggggtggaggctctcgctggcgctggccggcgtccccgccgtgttcctcaccgtcggcgccgtcttcttgccggagacgccgaacagCctcatccagcaaggcaaggaccgtgacacggtcaaggcgttgctgcagaggatcagaggcgtcgacgccgtcgtcgacgacgagctggacgagatcgtcgcCGCGAgcgccgccgcggcagcggcgcagggagagaacggcctgtggctgatcctgtcgcggcgccggtacaggccgcagctcgccatggccgtcctaataccggcgttcacgcagctgacgggcatcaacgcgatcgggttctacctgccggtgctgctgcgcaccgtcggcatgggcgagagcgcggcgctgctcaccacggtgatcctggtggtcgtctcctcggcgtcgacgctcgcgtccatgttcctcgtcgaccgcttcggcaggcgggcgctgctcctcgccggcggcgcccagatgctcgtctcggaggcgctcatcggcggcgtcatggcggcgaagctgggcgacgacggcgcgccgagcaaggcgtgcgccacgctgctcgtcgtcctcatcggcgtctactcgacgggcttcgggtggtcgtggggtcccctgagctggctggtgcccagcgaggtcctgccgCtggaggtccggtcggcggggcagagcgtggcggtggcgacgtgcttcgcgctcaccgtgctcgtcgcgcagtgctttctcgccgcgctgtgccggatgaaggcgtggatcttcttcttcttcgCcgggtggatcgtcgccatgacggctttcgtctacttcttcttgccggagacgaaggggattccgatcgaacaggtaggtagcGTgtgggaggagcactggttctggaggaggatagttgggactgatgAaatccatgcaagttccaagctgtcaaaatag
More
|
|||||||
| Protein seq | MAAGFVDDEGRRRSSGGRVTAFVALSCATAAMGGAIYGYDISIAGGVSSMEPFLRDFFPDVLRRMADSGGGGARRVSNYCKFDSQLLTLFTSSLYISGLLTAVLLASWVTASRGRRASMILGGFAYIAGAAVSGAAVNVSMAILGRALLGVGLGFTTQSVPLYMAEMAPARYRGAFSNGIQFSLCLGALAATTVNFAVEKIRGGWGWRLSLALAGVPAVFLTVGAVFLPETPNSLIQQGKDRDTVKALLQRIRGVDAVVDDELDEIVAASAAAAAAQGENGLWLILSRRRYRPQLAMAVLIPAFTQLTGINAIGFYLPVLLRTVGMGESAALLTTVILVVVSSASTLASMFLVDRFGRRALLLAGGAQMLVSEALIGGVMAAKLGDDGAPSKACATLLVVLIGVYSTGFGWSWGPLSWLVPSEVLPLEVRSAGQSVAVATCFALTVLVAQCFLAALCRMKAWIFFFFAGWIVAMTAFVYFFLPETKGIPIEQVGSVWEEHWFWRRIVGTDEIHASSKLSK
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0594000 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g38160 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0594000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0019090 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0019270 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0019090 | RBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0018760 | RBH | 0.042780 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0019040 | RBH | 0.000000 | 0.0 | 1.356639 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0348700 | SBH | 2.7087335 | 10.17656 | 8.811277 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0019610 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0361400 | SBH | 2.6441715 | 7.917672 | 13.9191795 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0019540 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0019040 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0018720 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0018860 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G019040 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0019310 | RBH | 0.0 | 0.0 | 0.0 |
