Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_11g0017910 | OGI:11062350 | 3/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr11:23175579-23179309 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctacaagagatattgtttgatggcacacagttctttagtgatatctccagttgacatcctattcgcaggcatttcccgagcgcatgacaatccaagcctaagcagtgaaataaggcaatcattccttctgtatgaagaatcatccgctctatgaaattcattctccaagcccagagagagttgagcgtcaacagcatccatcagtctaccatttatacccagctcaacatgctcacgaaggctctgtccttgtatgaagttgctatcagtgggcctcttcccagttactgtttctaacacgagaattccatagctgtaaatatctccatgagttgatactgtatttccggcaccatactctgtttaatcaaaggagttataattttgggtaacacttatatcgctgaaaatttaatgcaaagtcataatattaataggcaaaCATATGCTGCTTCACAAAAACCAAACTTCCATCTCAAACTTCCTAGAAGTTTGTCTAGCTAGCTGCATACGTACGTCATTAACAAAAGAACTAGGCAACAATAATTTGGAACCCTTCCCCTCAAGCACGCAAAACGGAACAATGGATTAGCATATAATTAATTAAGTATTAGCTAAAAAAACTTGAAAATAGTTTAATACTTCCTCCGTTTCACAATGTAAGTCATTTTAGCATTTTCCACATTCATATTAATACTAATGAATCTAGAAAGATATATATGTCTAGATTCATTAACATCAATATGAATATGGGAAATGCTAGAATGACTTACATTGCAAAACGGAGGTAGTATGATTTATCTCAAGAAACTTTATCTCAACAAAAAAAACATACCGTTTAGCAGTTCGGAAAGTGTGCGCATGCGCAcgAaaaatgagagagtagaaattgaaaaagtgtagtatagaacacaccctaaggagacaagtaaaattgctgaaaatatatcagtctaacctgggggagcataaccaattgtccctctaaatcccattgagcttgtggactgtcggagaaatgagttgccttcaacaagaatcttggagagtccaaaatctccaacatgtgctaccatctcagcatctaaaagcacattgcttggtttgagatcacagtgaacaacaggtgtgggtccatgggaatgtagataatccagcgcattagccacatcaagcaatatgctaactctctgaaggagatttaagtacttctcctcatttgtatcaggatgcaaccagctttctaaactaccatttggcatgaagtcgaatataattgctttgaagtcattccctctgttatcaatgcttgagcagactgtaaatattttaacgagattccggtgccgtagtttccgcagtgctttgcattcggctataaaactcttgagtgccccgttagtttgaagtttgagtaccttaacagcaacaacatttgcacattcaccaacttggccatccaactctcctttgtatacagacccaaatgatccggaacctagcaagttgttcgttgagaaaccatctgttgctctgaccaattgtgcataagggatggatgggtggccttgcatggatgttattgagggggtttctgatTTGtttttcttgtgccaagtaagaagcttgtagagcaatgcaaggacaactagtgtagcaacgagagaaatagcaacaggaatagctacaagATTatgttttttctttggtagttgattagaacatgcagacaaatgtagatcaggtttgccaccgcaaagtttgccattgccttggagtgaaattgcagtagcatttgcaaaaacaccgaaagtcggtacttcaccgacaaagctattgaatgaaagattgagataatagagcatagtgaggttgcctaagaacgtgggtatctggcctgacagattattgcttgaaagatcaagaatttgaagacctttcagttgactcagaagaggtgggatagatcccattaagaaattattttggagatagatgttctggagaattcggcattcaccaaggtttgtagggatttgacctgataacctgtttgaccctagacgcaattcgacaagattttgcaggttccctatttcctgtggtattgaaccctccaagctattgtctgacagatccaagatattagagagtgttgttatgcttaacaatccattgggaattgatccagtaaggttattacctgaaagacctagttccaataactttgtaaggtttccaaaagtgattggtattctaccactgaaggcattggatgacaagtataaataattcagttcagtaagatttcccatagtccatgggattgatccacgtattttgttttcaaatacatatagaagggccaagtttttaagcctactcatagaagagggaagataccctgtgaaagagttgctggagagctcgagatcctgtaagctgatgagattaccaatatctttaggtataggtcctgtgattttgttgcgagcaagctgaagaatttgtagagaggtggaaaggttggaaatggaatcaggaaggactccaccaaacttacagttacccaataccagagctgttagctgggaacaattggtgagtgtagttatgaattcccaatctttgggtccttcagcttcaagaaacgtgtccgcgagcactagaaaaacgagatttgttagcttcccaacctctggaggaacagtgccactaaagaagttatcagtgatctgaaagaacctgatatcagaagcattagctagtgaggctgggatacgaccatggaactggttgtggtcaatggttaattcttggagcttgtgaagagcagcgaatgcatgctgaggcatcactccactcagcatgttattctggacagaaagatgaaccagagaggagatgttccaaacagaggccgggatcgagccgcttaaattattgaaggctaagttgagccaagataagttggatagcatgcccaaagacgaagggatggctccggatagcatgttgaaatctagatcaataaccctgagtctggtaagattgcccaaagccggtggtatctcaccagacaacctgttgttgtacaggttcatgtactccatcgacagcaggtgtgtcagagatgcagggatctcacctgacaagccatttctatggaggaacaggttgacaagatatttcatgttgcctatctcggttgggatctcaccttggagccggttatcgctcaggtcaagcgtccggagacggctgcatcctcccagagccggaggaatggttccccggagagaattagtgctcagattcagcacccggaggctgccgaggcggccgaactccgacgggatctcgccgatgagatggttgtcgcgtaggtcgagctccgtgagggaggacaggttgcctagcaatggcgtcaggcgccctgacaagttgaaggagcccatgagcagcgagacgaccctgccaccgccgtgccgacgcctgctgcaggcaactcctggccaggtgcagtggtggctggacgtgttccaggaggccagcagaccggaggagccgcctgttagtagcatggacttgaaggacaggagcacgacctcgtcagccgctgtcgccattaccgtagccggagaagagggagacgccacggcgacatgggagtgtaggcacaacaacggcaagtagtagaagtatagcagcagctttgttgctcgggccat
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| CDS seq | atggcccgagcaacaaagctgctgctatacttctactacttgccgttgttgtgcctacactcccatgtcgccgtggcgtctccctcttctccggctacggtaatggcgacagcggctgacgaggtcgtgctcctgtccttcaagtccatgctactaacaggcggctcctccggtctgctggcctcctggaacacgtccagccaccactgcacctggccaggagttgcctgcagcaggcgtcggcacggcggtggcagggtcgtctcgctgctcatgggctccttcaacttgtcagggcgcctgacgccattgctaggcaacctgtcctccctcacggagctcgacctacgcgacaaccatctcatcggcgagatcccgtcggagttcggccgcctcggcagcctccgggtgctgaatctgagcactaattctctccggggaaccattcctccggctctgggaggatgcagccgtctccggacgcttgacctgagcgataaccggctccaaggtgagatcccaaccgagataggcaacatgaaatatcttgtcaacctgttcctccatagaaatggcttgtcaggtgagatccctgcatctctgacacacctgctgtcgatggagtacatgaacctgtacaacaacaggttgtctggtgagataccaccggctttgggcaatcttaccagactcagggttattgatctagatttcaacatgctatccggagccatcccttcgtctttgggcatgctatccaacttatcttggctcaacttagccttcaataatttaagcggctcgatcccggcctctgtttggaacatctcctctctggttcatctttctgtccagaataacatgctgagtggagtgatgcctcagcatgcattcgctgctcttcacaagctccaagaattaaccattgaccacaaccagttccatggtctgctcgcggacacgtttcttgaagctgaaggacccaaagattgggaattcataactacactcaccaattgttcccagctaacagctctggtattgggtaactgtaagtttggtggagtccttcctgattccatttccaacctttccacctctctacaaattcttcagcttgctcgcaacaaaatcacaggacctatacctaaagatattggtaatctcatcagcttacaggatctcgagctctccagcaactctttcacagggtatcttccctcttctatgagtaggcttaaaaacttggcccttctatatgtatttgaaaacaaaatacgtggatcaatcccatggactatgggaaatcttactgaactgaattatttatacttgtcatccaatgccttcagtggtagaataccaatcacttttggaaaccttacaaagttattggaactaggtctttcagacaatagcttggagggttcaataccacaggaaatagggaacctgcaaaatcttgtcgaattgcgtctagggtcaaacaggttatcaggtcaaatccctacaaaccttggtgaatgccgaattctccagaacatctatctccaaaataatttcttaatgggatctatcccacctcttctgagtcaactgaaaggtcttcaaattcttgatctttcaagcaataatctgtcaggccagatacccacgttcttaggcaacctcactatgctctattatctcaatctttcattcaatagctttgtcggtgaagtaccgactttcggtgtttttgcaaatgctactgcaatttcactccaaggcaatggcaaactttgcggtggcaaacctgatctacatttgtctgcatgttctaatcaactaccaaagaaaaaacatAATcttgtagctattcctgttgctatttctctcgttgctacactagttgtccttgcattgctctacaagcttcttacttggcacaagaaaaaCAAatcagaaaccccctcaataacatccatgcaaggccacccatccatcccttatgcacaattggtcagagcaacagatggtttctcaacgaacaacttgctaggttccggatcatttgggtctgtatacaaaggagagttggatggccaagttggtgaatgtgcaaatgttgttgctgttaaggtactcaaacttcaaactaacggggcactcaagagttttatagccgaatgcaaagcactgcggaaactacggcaccggaatctcgttaaaatatttacagtctgctcaagcattgataacagagggaatgacttcaaagcaattatattcgacttcatgccaaatggtagtttagaaagctggttgcatcctgatacaaatgaggagaagtacttaaatctccttcagagagttagcatattgcttgatgtggctaatgcgctggattatctacattcccatggacccacacctgttgttcactgtgatctcaaaccaagcaatgtgcttttagatgctgagatggtagcacatgttggagattttggactctccaagattcttgttgaaggcaactcatttctccgacacgatataaagtatggtgccggaaatacagtatcaactcatggagatatttacagctatggaattctcgtgttagaaacagtaactgggaagaggcccactgatagcaacttcatacaaggacagagccttcgtgagcatgttgagctgggtataaatggtagactgatggatgctgttgacgctcaactctctctgggcttggagaatgaatttcatagagcggatgattcttcatacagaaggaatgattgccttatttcactgcttaggcttggattgtcatgcgctcgggaaatgcctgcgaataggatgtcaactggagatatcactaaagaactgtgtgccatcaaacaatatctcttgtag
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| Protein seq | MARATKLLLYFYYLPLLCLHSHVAVASPSSPATVMATAADEVVLLSFKSMLLTGGSSGLLASWNTSSHHCTWPGVACSRRRHGGGRVVSLLMGSFNLSGRLTPLLGNLSSLTELDLRDNHLIGEIPSEFGRLGSLRVLNLSTNSLRGTIPPALGGCSRLRTLDLSDNRLQGEIPTEIGNMKYLVNLFLHRNGLSGEIPASLTHLLSMEYMNLYNNRLSGEIPPALGNLTRLRVIDLDFNMLSGAIPSSLGMLSNLSWLNLAFNNLSGSIPASVWNISSLVHLSVQNNMLSGVMPQHAFAALHKLQELTIDHNQFHGLLADTFLEAEGPKDWEFITTLTNCSQLTALVLGNCKFGGVLPDSISNLSTSLQILQLARNKITGPIPKDIGNLISLQDLELSSNSFTGYLPSSMSRLKNLALLYVFENKIRGSIPWTMGNLTELNYLYLSSNAFSGRIPITFGNLTKLLELGLSDNSLEGSIPQEIGNLQNLVELRLGSNRLSGQIPTNLGECRILQNIYLQNNFLMGSIPPLLSQLKGLQILDLSSNNLSGQIPTFLGNLTMLYYLNLSFNSFVGEVPTFGVFANATAISLQGNGKLCGGKPDLHLSACSNQLPKKKHNLVAIPVAISLVATLVVLALLYKLLTWHKKNKSETPSITSMQGHPSIPYAQLVRATDGFSTNNLLGSGSFGSVYKGELDGQVGECANVVAVKVLKLQTNGALKSFIAECKALRKLRHRNLVKIFTVCSSIDNRGNDFKAIIFDFMPNGSLESWLHPDTNEEKYLNLLQRVSILLDVANALDYLHSHGPTPVVHCDLKPSNVLLDAEMVAHVGDFGLSKILVEGNSFLRHDIKYGAGNTVSTHGDIYSYGILVLETVTGKRPTDSNFIQGQSLREHVELGINGRLMDAVDAQLSLGLENEFHRADDSSYRRNDCLISLLRLGLSCAREMPANRMSTGDITKELCAIKQYLL |
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| Function | Receptor kinase-like protein Xa21 [UniProtKB/Swiss-Prot:Q1MX30] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_11g0017910 | OsLima_11g0017910.01 | Chr11 | 23175579 | 23179309 | - | NAM | ||
| CDS seq | atggcccgagcaacaaagctgctgctatacttctactacttgccgttgttgtgcctacactcccatgtcgccgtggcgtctccctcttctccggctacggtaatggcgacagcggctgacgaggtcgtgctcctgtccttcaagtccatgctactaacaggcggctcctccggtctgctggcctcctggaacacgtccagccaccactgcacctggccaggagttgcctgcagcaggcgtcggcacggcggtggcagggtcgtctcgctgctcatgggctccttcaacttgtcagggcgcctgacgccattgctaggcaacctgtcctccctcacggagctcgacctacgcgacaaccatctcatcggcgagatcccgtcggagttcggccgcctcggcagcctccgggtgctgaatctgagcactaattctctccggggaaccattcctccggctctgggaggatgcagccgtctccggacgcttgacctgagcgataaccggctccaaggtgagatcccaaccgagataggcaacatgaaatatcttgtcaacctgttcctccatagaaatggcttgtcaggtgagatccctgcatctctgacacacctgctgtcgatggagtacatgaacctgtacaacaacaggttgtctggtgagataccaccggctttgggcaatcttaccagactcagggttattgatctagatttcaacatgctatccggagccatcccttcgtctttgggcatgctatccaacttatcttggctcaacttagccttcaataatttaagcggctcgatcccggcctctgtttggaacatctcctctctggttcatctttctgtccagaataacatgctgagtggagtgatgcctcagcatgcattcgctgctcttcacaagctccaagaattaaccattgaccacaaccagttccatggtctgctcgcggacacgtttcttgaagctgaaggacccaaagattgggaattcataactacactcaccaattgttcccagctaacagctctggtattgggtaactgtaagtttggtggagtccttcctgattccatttccaacctttccacctctctacaaattcttcagcttgctcgcaacaaaatcacaggacctatacctaaagatattggtaatctcatcagcttacaggatctcgagctctccagcaactctttcacagggtatcttccctcttctatgagtaggcttaaaaacttggcccttctatatgtatttgaaaacaaaatacgtggatcaatcccatggactatgggaaatcttactgaactgaattatttatacttgtcatccaatgccttcagtggtagaataccaatcacttttggaaaccttacaaagttattggaactaggtctttcagacaatagcttggagggttcaataccacaggaaatagggaacctgcaaaatcttgtcgaattgcgtctagggtcaaacaggttatcaggtcaaatccctacaaaccttggtgaatgccgaattctccagaacatctatctccaaaataatttcttaatgggatctatcccacctcttctgagtcaactgaaaggtcttcaaattcttgatctttcaagcaataatctgtcaggccagatacccacgttcttaggcaacctcactatgctctattatctcaatctttcattcaatagctttgtcggtgaagtaccgactttcggtgtttttgcaaatgctactgcaatttcactccaaggcaatggcaaactttgcggtggcaaacctgatctacatttgtctgcatgttctaatcaactaccaaagaaaaaacatAATcttgtagctattcctgttgctatttctctcgttgctacactagttgtccttgcattgctctacaagcttcttacttggcacaagaaaaaCAAatcagaaaccccctcaataacatccatgcaaggccacccatccatcccttatgcacaattggtcagagcaacagatggtttctcaacgaacaacttgctaggttccggatcatttgggtctgtatacaaaggagagttggatggccaagttggtgaatgtgcaaatgttgttgctgttaaggtactcaaacttcaaactaacggggcactcaagagttttatagccgaatgcaaagcactgcggaaactacggcaccggaatctcgttaaaatatttacagtctgctcaagcattgataacagagggaatgacttcaaagcaattatattcgacttcatgccaaatggtagtttagaaagctggttgcatcctgatacaaatgaggagaagtacttaaatctccttcagagagttagcatattgcttgatgtggctaatgcgctggattatctacattcccatggacccacacctgttgttcactgtgatctcaaaccaagcaatgtgcttttagatgctgagatggtagcacatgttggagattttggactctccaagattcttgttgaaggcaactcatttctccgacacgatataaagtatggtgccggaaatacagtatcaactcatggagatatttacagctatggaattctcgtgttagaaacagtaactgggaagaggcccactgatagcaacttcatacaaggacagagccttcgtgagcatgttgagctgggtataaatggtagactgatggatgctgttgacgctcaactctctctgggcttggagaatgaatttcatagagcggatgattcttcatacagaaggaatgattgccttatttcactgcttaggcttggattgtcatgcgctcgggaaatgcctgcgaataggatgtcaactggagatatcactaaagaactgtgtgccatcaaacaatatctcttgtag
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| Protein seq | MARATKLLLYFYYLPLLCLHSHVAVASPSSPATVMATAADEVVLLSFKSMLLTGGSSGLLASWNTSSHHCTWPGVACSRRRHGGGRVVSLLMGSFNLSGRLTPLLGNLSSLTELDLRDNHLIGEIPSEFGRLGSLRVLNLSTNSLRGTIPPALGGCSRLRTLDLSDNRLQGEIPTEIGNMKYLVNLFLHRNGLSGEIPASLTHLLSMEYMNLYNNRLSGEIPPALGNLTRLRVIDLDFNMLSGAIPSSLGMLSNLSWLNLAFNNLSGSIPASVWNISSLVHLSVQNNMLSGVMPQHAFAALHKLQELTIDHNQFHGLLADTFLEAEGPKDWEFITTLTNCSQLTALVLGNCKFGGVLPDSISNLSTSLQILQLARNKITGPIPKDIGNLISLQDLELSSNSFTGYLPSSMSRLKNLALLYVFENKIRGSIPWTMGNLTELNYLYLSSNAFSGRIPITFGNLTKLLELGLSDNSLEGSIPQEIGNLQNLVELRLGSNRLSGQIPTNLGECRILQNIYLQNNFLMGSIPPLLSQLKGLQILDLSSNNLSGQIPTFLGNLTMLYYLNLSFNSFVGEVPTFGVFANATAISLQGNGKLCGGKPDLHLSACSNQLPKKKHNLVAIPVAISLVATLVVLALLYKLLTWHKKNKSETPSITSMQGHPSIPYAQLVRATDGFSTNNLLGSGSFGSVYKGELDGQVGECANVVAVKVLKLQTNGALKSFIAECKALRKLRHRNLVKIFTVCSSIDNRGNDFKAIIFDFMPNGSLESWLHPDTNEEKYLNLLQRVSILLDVANALDYLHSHGPTPVVHCDLKPSNVLLDAEMVAHVGDFGLSKILVEGNSFLRHDIKYGAGNTVSTHGDIYSYGILVLETVTGKRPTDSNFIQGQSLREHVELGINGRLMDAVDAQLSLGLENEFHRADDSSYRRNDCLISLLRLGLSCAREMPANRMSTGDITKELCAIKQYLL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0514500 | SBH | 1.347372 | 0.493402 | 4.807386 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g31540 | SBH | 0.904785 | 0.329531 | 1.228852 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0514500 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0017830 | SBH | 0.128877 | 6.788608 | 1.696541 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0017950 | SBH | 0.037384 | 0.707040 | 1.005031 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0017770 | SBH | 0.164332 | 9.540369 | 4.595458 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0017440 | SBH | 0.021506 | 0.098889 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0017780 | SBH | 0.347210 | 0.0 | 0.746363 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0331900 | SBH | 0.181473 | 1.623064 | 0.030861 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0018270 | SBH | 0.040696 | 0.0 | 0.079613 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0336200 | SBH | 0.3060335 | 0.03045 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0018150 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0024760 | SBH | 0.027641 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0017710 | SBH | 0.429796 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0017370 | RBH | 0.000000 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0017730 | SBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G017520 | RBH | 0.000000 | 0.000000 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0018050 | SBH | 0.0 | 0.0 | 0.0 |
