Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_10g0016870 | OGI:03035980 | 14/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr10:22089170-22090625 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTCGAGAATTTCCACAAGCACAAATTCTGCTTTTTATGGGTCCAAAGATTCTTTCGCAAAACAATCCATCTTTTTCTGGTTTATCGGTTTTATAATGAAAAGTGGAGGGCCTTGTGACTTCACCAACGACTTCCCCATTAGGTAGTGTTTTGTTAGCCCAAGCCTTTATTTGTTGAGGGGAAACGAGTCCAATTTGAAGTTGTTGATGTTTATATTGGTCAATCATAAAATAGAAATAAGAAAAGAATTTATATTTATTCCGATCAAACTTCTTCCCTATTAACCTGGAAGTTCTTCTGAGATACAAGGAAATGGTTCAGTTCTAGAGCCAAAGATCGTAGTTCTCGAACAAGCACTCGAAAAGATTCTGGAGGATCCTCGTGATTAGGTACTCGTTTTCCCCAGATCGTAGCGTTAAGTATTTCTTGGCGAGCTATAAGATGATCAGATTTATAAGTAAGTATCTCTTGTAAAATATGAGCAACACCAAATCCTTCTAAAGCCCAAACTTCCATTTCTCCTATTCGTTGTCCCCCTTGCTTGGCTCTTCCTCTAACGGGTTGTTGTGTAACAAGTGAATAGGGCCCAGTAGAGCGTCCGTGGATTTTCTCATCAACTTGATGAATTAATTTTAAGATATAGGACTTCCCTATTAGAACAGGCTGTTCGAAGGGGTCTCCTGTTCTTCCATCAAATATTCTGCTTTTTCCCGGGTACTCGGGTTCAAATACCCACGGATTTTTTGTTTGTTTACTGGCTTCATATAATTCTGAAAACACAAGTTTTCTTGAAGCCTCTTGCTCATATCTCTCATCAAAGGGTGCTATTCTATAATGTTTCTTTAGCAGATCCCCTACTAATCCGAGCGAGCTTTCAAATATTTGTCCCCCACATTCATTCGGGAGGGTACTCCTAAGGGATTGAAAACCATATCAACAGGCGTTCCATCTTGCAAATAGGGCATATCTTGCCTAGGCAAAATTTTGGAAATGATCCCCTTATTCCCGTGTTTTCCGGCTACTTTATCCCCAACTTTGATTTCGCGTTTTTGTAAAATATATACACGAACCATTATGTCGAGGGGATCCCTCTGGATCCATTTCACATCGATAACGCGTCCTCTTCCACCTATCGGTAGTTTGAGAGAAGTTTCTTTTGAAGTGGATACCTCAAGACCAAATATGGCCCGTAATAATCCAGCTTCCGCGATATAGGACGATTCGCTCGCTATCTGAGGCGTTAATTTACCTACTAAAATATCGCCTGTTTCTACCCAGGACCCCAACTTCACAACTCCATTTCTGTCCAAATTGCGGAGTAAATGTTCTTCTAGATGTGGTATTTCTTTAGTGATTTTTTCAGCGGAACCTTGGCTTGTTGTATCCGTCTGTTGGGGGGGGGGGGTGTCTATGCAGTGCAATAATTTCAATAAACCAGAGGTACTCGTACTCCTATA
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| CDS seq | ATGGTTCGTGTATATATTTTACAAAAACGCGAAATCAAAGTTGGGGATAAAGTAGCCGGAAAACACGGGAATAAGGGGATCATTTCCAAAATTTTGCCTAGGCAAGATATGCCCTATTTGCAAGATGGAACGCCTGTTGATATGAAACATTATAGAATAGCACCCTTTGATGAGAGATATGAGCAAGAGGCTTCAAGAAAACTTGTGTTTTCAGAATTATATGAAGCCAGTAAACAAACAAAAAATCCGTGGGTATTTGAACCCGAGTACCCGGGAAAAAGCAGAATATTTGATGGAAGAACAGGAGACCCCTTCGAACAGCCTGTTCTAATAGGGAAGTCCTATATCTTAAAATTAATTCATCAAGTTGATGAGAAAATCCACGGACGCTCTACTGGGCCCTATTCACTTGTTACACAACAACCCGTTAGAGGAAGAGCCAAGCAAGGGGGACAACGAATAGGAGAAATGGAAGTTTGGGCTTTAGAAGGATTTGGTGTTGCTCATATTTTACAAGAGATACTTACTTATAAATCTGATCATCTTATAGCTCGCCAAGAAATACTTAACGCTACGATCTGGGGAAAACGAGTACCTAATCACGAGGATCCTCCAGAATCTTTTCGAGTGCTTGTTCGAGAACTACGATCTTTGGCTCTAGAACTGAACCATTTCCTTGTATCTCAGAAGAACTTCCAGGTTAATAGGGAAGAAGTTTGA
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| Protein seq | MVRVYILQKREIKVGDKVAGKHGNKGIISKILPRQDMPYLQDGTPVDMKHYRIAPFDERYEQEASRKLVFSELYEASKQTKNPWVFEPEYPGKSRIFDGRTGDPFEQPVLIGKSYILKLIHQVDEKIHGRSTGPYSLVTQQPVRGRAKQGGQRIGEMEVWALEGFGVAHILQEILTYKSDHLIARQEILNATIWGKRVPNHEDPPESFRVLVRELRSLALELNHFLVSQKNFQVNREEV |
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| Function | DNA-directed RNA polymerase subunit beta [UniProtKB/Swiss-Prot:P0C503] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_10g0016870 | OsLima_10g0016870.01 | Chr10 | 22089170 | 22090625 | - | NAM | ||
| CDS seq | ATGGTTCGTGTATATATTTTACAAAAACGCGAAATCAAAGTTGGGGATAAAGTAGCCGGAAAACACGGGAATAAGGGGATCATTTCCAAAATTTTGCCTAGGCAAGATATGCCCTATTTGCAAGATGGAACGCCTGTTGATATGAAACATTATAGAATAGCACCCTTTGATGAGAGATATGAGCAAGAGGCTTCAAGAAAACTTGTGTTTTCAGAATTATATGAAGCCAGTAAACAAACAAAAAATCCGTGGGTATTTGAACCCGAGTACCCGGGAAAAAGCAGAATATTTGATGGAAGAACAGGAGACCCCTTCGAACAGCCTGTTCTAATAGGGAAGTCCTATATCTTAAAATTAATTCATCAAGTTGATGAGAAAATCCACGGACGCTCTACTGGGCCCTATTCACTTGTTACACAACAACCCGTTAGAGGAAGAGCCAAGCAAGGGGGACAACGAATAGGAGAAATGGAAGTTTGGGCTTTAGAAGGATTTGGTGTTGCTCATATTTTACAAGAGATACTTACTTATAAATCTGATCATCTTATAGCTCGCCAAGAAATACTTAACGCTACGATCTGGGGAAAACGAGTACCTAATCACGAGGATCCTCCAGAATCTTTTCGAGTGCTTGTTCGAGAACTACGATCTTTGGCTCTAGAACTGAACCATTTCCTTGTATCTCAGAAGAACTTCCAGGTTAATAGGGAAGAAGTTTGA
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| Protein seq | MVRVYILQKREIKVGDKVAGKHGNKGIISKILPRQDMPYLQDGTPVDMKHYRIAPFDERYEQEASRKLVFSELYEASKQTKNPWVFEPEYPGKSRIFDGRTGDPFEQPVLIGKSYILKLIHQVDEKIHGRSTGPYSLVTQQPVRGRAKQGGQRIGEMEVWALEGFGVAHILQEILTYKSDHLIARQEILNATIWGKRVPNHEDPPESFRVLVRELRSLALELNHFLVSQKNFQVNREEV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.983059 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g35290 | SBH | 1.866557 | 2.758465 | 0.294071 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0015940 | SBH | 0.965142 | 2.986560 | 3.351516 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0016180 | SBH | 0.067201 | 2.913599 | 1.987386 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0015570 | SBH | 2.255954 | 2.945503 | 10.800733 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0016070 | SBH | 0.244882 | 0.094573 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0010580 | SBH | 219.251602 | 74.555695 | 189.836349 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0313000 | SBH | 4.9548955 | 12.3800915 | 4.2865275 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0015810 | SBH | 0.339492 | 0.416792 | 1.297991 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0335300 | SBH | 5.446248 | 20.1591045 | 19.9391985 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0010410 | RBH | 2.980701 | 0.498440 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0017770 | RBH | 6.429429 | 89.839859 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0017300 | RBH | 110.447609 | 95.247108 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0020030 | RBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0016110 | SBH | 0.108964 | 3.400611 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G015720 | SBH | 1.285790 | 4.953656 | 2.352046 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0015860 | SBH | 2.596596 | 5.160211 | 2.852861 |
