Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_08g0001670 | OGI:08003280 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr08:1431068-1437328 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctaacgaggtgtgattgctgtttgtgtcaaacttgatgatgacatacccgtcgatgacgagagctgcccctctgatgaggccaccggcggtgcatatgttgccacgggcatcttggctggtagcatcggcattggtccactggactggaggaccatcatagcagctctgattgatggccgctggcatcggtctggatgcgcacaccagagcccgacagcaatgacacgctccatctcaaccacatcatagtcattgttgagccgcttgtcagctgcgttgtgaatggctccctggccgtatagatcccagacccactcgactagtcggaagagaccattattttgatcatccagtagactcattggtctccttgcacataccacttctaataaaacaaccccaaaactgtagacatcagattcggcacttgctttaccagtgatcacacattcggggtcaatatagccgggcgtcccagaggggtgcgtcattgtctgtatcccatcagcatggtcaatgagccttgcgaggccgaagtcacctagcttcgtattgaaggattcatccagcatgacattgcttggcttgatgtcacggtgcacaacacattgctcccactcctcatggaggtagagcagggcggatccgagcccaataacaatgttgatcctgcaacatccaaacccaataactgatcagttcatggccatttgtcaattgcacattagcaaaaattctaatgaattagggaaatcaattacctcattggccatgtgaggaaggtaccattgccgtagagatggacgtcaaggctgcggttggggacgagctcgtagacgaggaggagctcgttgcggccatggcaccagccgatgagctgaaccagattgcggtggcgtagccggcttatgaccttgatctctgacttgtactccctcctcccttggttggaggaatctttgatgaacctcttaatggcgacggcgaggccctgctctcttagatagccccggtacactgcgccgaatccgccctggccaagcttctcctccgccgcgaagctcttggttgcgttgacgagcacatggtacgcgaaccgcctcggccccgtcccgttctcgatctccatgatgggatcgccttccgtgtcatcgtcgtcgtcgttcgcctcctccgcctccctcatcttcttcctctgatgtcgtcgtcgtacgagtacgacgactgctaccatggcgaagaggagcacgacgaacagtgctgcgccgacggtggctcccgctacaaccccgccacttcctgaaccggaggtaggcggtggtgacggtgacggcggcgccaccggtggcggtgcggccttgggttccagcgacgagctgaagtaccatgaacgcagctgatgcagctcgacggatgtggacgtcgcggcggagaagccgacgacgacctgctccggcaacacgctcttgaggtcaaccttgtagctaaggttgtaatccggccggtgacgggggccactaagcccatagccgaggtgcagcctcatggccaggatgctggagacgttgtcgtactcgacgacggcggtcatgttcccgacgagggtgaagcttggcaaggtcaagatcctcttggacacgacggagttgacgtcgacgccgaggtggtcgtaggtggcgtcggggtcgtgcacgatggtgtcgttgaaggtgtcgaactccacggcgacgaaccggtcgtcgccggcggccacctggtcggcggtctggttggtgaggccgaggttgtaggcgtaggagccggcggacgggagcctcgacgggaagccggcgaggaagaaggccatgccggcgcccttgttgttgatgccgccgtcctcttttggcgggttgatgacgaaggagaagccggtggtgaagctggcaacctcgccggtggcggcgtcccagagaggtaccggaagggcgtacgacaccctgccacggctgtggtcgatgctgccgtcgagcctgttggcgctgatgtcaacccacccgccgccgtcgccgctgaaggagacgttggcgctgaaggccgcgtcgccttcaagcctgatgttcgtctgctcgtccgggccgaagttggtgtggttgaaggtcaaggccacggcgactggagccggcgagtagagatcgtcgcagaagacggacaagaagaagaagatgagcccgacaatattgttcgtcgtggtggttgccggcaagacgccggccatcgatcgccaccgtgttccctcccccgctgattaatagagtcaatgcgtatactgtttgcagtggcagtagtgtggagacatcatgatgaattttagaagaaaggtaagggtggcccatcaggaaagcacatggatacttccttttccttcttcgttccacacgtgcgacagcctgtgaataactaacaactggacgaacgagtatgcgaaactgtataagggaacatggttaacgattcggttgcgcaggagaaaaaaaaaagaaaaaggagaaaaaaattccatgtcatcgtccatgtggcgtgtcacataggcaagagcacggtcaaacgcggctttggaccgagatgatacagtaaaccaagtttaaagatctcgatgtgcacttagcaagttcgtaaacctgagtgaaacttcctaactagtttaagaactgctggtgtattttattttttttatggtgcgcccaaacttctcaaaattgtgactgaaaattaaccattgcctccatgaacattggtttgattaattttctcgacttcgaggaatataatgagcctatgctgatgttgattttaagcacgtgcactggtttcgttctaacgacacggagttataaaaatcctttgaataattgatagtataaattattgttgtcctctacctttaaaaaattatactaccgtataaagttaggcaccgatatctagatatatatatccaaaacacaaacacatctgatcaccaatcaccattgatagtagagctaggtgcaatgcacatgaaaccgcaagtcgaaggactactggagcccatatgaagactgaaactattgtagtagttgctttcaggagaccataagtcaaggactagcactatcctatctaaaattattgtagccatccactgattgatcgagagtgatgctggaaaaaaaaagtacATatatatctatctactcaagagagaccagtcaatgtctcaaggtctctgctaatagcttcctctaatGggactacctatatattcgtttataaattttcttcaaaaattttggtagataaaataaatagtacaatacattttaatttacataaaactaaaatttaacttgtatgtaacttttaaaaatctcttaggctatttctataaaatggaggtcatgtgaccaaatccccacatgtgtatgcggtgtgatttttttctctcgttagtacgaatcttgaagcaaatctaacgatgtagttacactataattatattataTttacatgtcaatattttgggagaaaatttgctaataaatacagtatatagcaaaatcactaggaattgattaaagcaactttgcctgcaggctatggcccagcctaactttgtactatgggcctgatggtgaaggcaataaggaggatggaggccaactctactaatgggcctgaggcccagaacattaactggcttctagcaagcggacgatcgaaagaacgagctgttaggTAtatcggcaatctgaatgaatagaaatgtggcattatacatttatacatacatatttgtagacaaacttaaaatgactgtaaaagttcaaagcatggcgtaaataccagataactcacaccggcaattaagcaaaagtctaacgatcaaatcaacggcgctgacgagctgaacatcccatccaagcatcaactactatAaaatcaagaacaactcaaatgaactgaacattactagaactgatgttcgagcaacgaagacgagtccttcgaaccagctgaagtggatgtgtcagaagaagtcgagatgtgagttgcgtagccactcaccgttgttgttgatgactgtgtcgcacttgaggatgacatccctgcaggcgacgtgaagagctcatccacagagaccactggaggaatgtacatcggcacgggcatcttagccggcaacactggcagttgcccaccggattggagcatagccatggcatttctgatagatggacgcgcgttcggatcagggtgtgcgcaccagagcccgatgacaatgacatgctccatctccgccgcgtcgtagtcgccgttgagccgctcatcagcggccgtgagaatgtctcccttgccgtacaaatcctaggcccactcgacgaaccggaagataccattcttctggctgtctagtaagctcatcggcctcctccCGcacgccacctccagtaggacaatgccgaagctgtaaacgtcggactctacccttgctctgccggtgatcacgcattcaggatcaacatagcccggtgtcccagagactgcagtcattgtctgcatccccacgatgtgatcaatgaaccttgcaagtccgaagtcacctagtttggcattgaaggactcatccaacatgacattgcttggcttgatgtcacggtgtacgacacattgctcccactcctcatgaaggtagaatagggctgatccgagcccaagaataatcttgaccctgtgacaaaatggaagttagctgatcacttgagttaaatttaacaataaacattcgctgattgagttgacactatagtgattaagacaaaattagcaagagtcaataacctcattggccatgtgaggaaggtgccattgccatgtagatggatgtcgaggctacggttggggactagctcgtagacgaggaggagctcgtcactgccatggcaccagccgatgagctgcacgagattgcggtggcgtagacggcttatgaccttgatctctgacttgtactccttcctgccttgcttggtggaatctttggtgaatctcTttatggcaacggcgaggccctgctctctgaggaagccccgatacactgtgccgaaaccgccttgcccaagcttctcctccgccgcgaaactcttggtcgcctcgacaagctcgtagtatggaaatcgccttggccccgtccccatctcgatctcgacgatggtctcgccgtcgtcgtcatcgtcgctgccatccatggctccgttctttgcctcctctgtctccctcttcttgctctgacgatgtcgtacaaggactgctaccatggcgaagaggagtatgacgaacattaccgtgccaacggtggctcccgctacaactctgccacgcaccgcggcctttggttccaacgatgagctgaaataccatgaatgcagctgatgcagctcaaaggatgtggtcgtggaggcggagaagccaacggagaccaGctccggcaacacgctcttgaggtcaaccttgtagctaaggttgtaatccggccggtgacgggggccactaagcccatagccgaggtgcagcctcatggccaggatgctggagacgttgtcgtactcgacgacggcggtcatgttcccgacgagggtgaagctgggtaaggtcaaggtcttgttggacacgactgagttgacatcgatgccgaggtggtcgtaggtggcgtcggggtcgtgcaccatggtgttgttgaaggtgtcgaactccaccgcgacgaaccggctgtcgccggacgcgatggcgtccgggccttggtcggtgagaccgatgttgtagccgagttcatcgaCcccgctcgggagcatggatgggtaggcggcgaggaagaaggccatgccggtgcccttgttgttgatgccgccgtactcttcgagcgggttgatgacgaaggagaagcgcgtggtgaagctggcaacctcgccggtgtccctgctccagaggagcatcggccgggcgttgtacgatgccctgcctttgctgtgtcccctgtgaccgtacctgttggcgctgatgtcgatccacccgtcgccgaaggaggcgtcgccttcgagtctgatggtgttcccgtcgtcctggctgaaggtggagtagttgaagtacaaggcggcgaccggagccggacgcaggtagcagacgGAgaagaagatgatgcccacagcgcaagtgatcgctgatgtgatcagcggaaagccagccat
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| CDS seq | atggccggcgtcttgccggcaaccaccacgacgaacaatattgtcgggctcatcttcttcttcttgtccgtcttctgcgacgatctctactcgccggctccagtcgccgtggccttgaccttcaaccacaccaacttcggcccggacgagcagacgaacatcaggcttgaaggcgacgcggccttcagcgccaacgtctccttcagcggcgacggcggcgggtgggttgacatcagcgccaacaggctcgacggcagcatcgaccacagccgtggcagggtgtcgtacgcccttccggtacctctctgggacgccgccaccggcgaggttgccagcttcaccaccggcttctccttcgtcatcaacccgccaaaagaggacggcggcatcaacaacaagggcgccggcatggccttcttcctcgccggcttcccgtcgaggctcccgtccgccggctcctacgcctacaacctcggcctcaccaaccagaccgccgaccaggtggccgccggcgacgaccggttcgtcgccgtggagttcgacaccttcaacgacaccatcgtgcacgaccccgacgccacctacgaccacctcggcgtcgacgtcaactccgtcgtgtccaagaggatcttgaccttgccaagcttcaccctcgtcgggaacatgaccgccgtcgtcgagtacgacaacgtctccagcatcctggccatgaggctgcacctcggctatgggcttagtggcccccgtcaccggccggattacaaccttagctacaaggttgacctcaagagcgtgttgccggagcaggtcgtcgtcggcttctccgccgcgacgtccacatccgtcgagctgcatcagctgcgttcatggtacttcagctcgtcgctggaacccaaggccgcaccgccaccggtggcgccgccgtcaccgtcaccaccgcctacctccggttcaggaagtggcggggttgtagcgggagccaccgtcggcgcagcactgttcgtcgtgctcctcttcgccatggtagcagtcgtcgtactcgtacgacgacgacatcagaggaagaagatgagggaggcggaggaggcgaacgacgacgacgatgacacggaaggcgatcccatcatggagatcgagaacgggacggggccgaggcggttcgcgtaccatgtgctcgtcaacgcaaccaagagcttcgcggcggaggagaagcttggccagggcggattcggcgcagtgtaccggggctatctaagagagcagggcctcgccgtcgccattaagaggttcatcaaagattcctccaaccaagggaggagggagtacaagtcagagatcaaggtcataagccggctacgccaccgcaatctggttcagctcatcggctggtgccatggccgcaacgagctcctcctcgtctacgagctcgtccccaaccgcagccttgacgtccatctctacggcaatggtaccttcctcacatggccaatgaggatcaacattgttattgggctcggatccgccctgctctacctccatgaggagtgggagcaatgtgttgtgcaccgtgacatcaagccaagcaatgtcatgctggatgaatccttcaatacgaagctaggtgacttcggcctcgcaaggctcattgaccatgctgatgggatacagacaatgacgcacccctctgggacgcccggctatattgaccccgaatgtgtgatcactggtaaagcaagtgccgaatctgatgtctacagttttggggttgttttattagaagtggtatgtgcaaggagaccaatgagtctactggatgatcaaaataatggtctcttccgactagtcgagtgggtctgggatctatacggccagggagccattcacaacgcagctgacaagcggctcaacaatgactatgatgtggttgagatggagcgtgtcattgctgtcgggctctggtgtgcgcatccagaccgatgccagcggccatcaatcagagctgctatgatggtcctccagtccagtggaccaatgccgatgctaccagccaagatgcccgtggcaacatatgcaccgccggtggcctcatcagaggggcagctctcgtcatcgacgggtatgtcatcatcaagtttgacacaaacagcaatcacacctcgttag
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| Protein seq | MAGVLPATTTTNNIVGLIFFFLSVFCDDLYSPAPVAVALTFNHTNFGPDEQTNIRLEGDAAFSANVSFSGDGGGWVDISANRLDGSIDHSRGRVSYALPVPLWDAATGEVASFTTGFSFVINPPKEDGGINNKGAGMAFFLAGFPSRLPSAGSYAYNLGLTNQTADQVAAGDDRFVAVEFDTFNDTIVHDPDATYDHLGVDVNSVVSKRILTLPSFTLVGNMTAVVEYDNVSSILAMRLHLGYGLSGPRHRPDYNLSYKVDLKSVLPEQVVVGFSAATSTSVELHQLRSWYFSSSLEPKAAPPPVAPPSPSPPPTSGSGSGGVVAGATVGAALFVVLLFAMVAVVVLVRRRHQRKKMREAEEANDDDDDTEGDPIMEIENGTGPRRFAYHVLVNATKSFAAEEKLGQGGFGAVYRGYLREQGLAVAIKRFIKDSSNQGRREYKSEIKVISRLRHRNLVQLIGWCHGRNELLLVYELVPNRSLDVHLYGNGTFLTWPMRINIVIGLGSALLYLHEEWEQCVVHRDIKPSNVMLDESFNTKLGDFGLARLIDHADGIQTMTHPSGTPGYIDPECVITGKASAESDVYSFGVVLLEVVCARRPMSLLDDQNNGLFRLVEWVWDLYGQGAIHNAADKRLNNDYDVVEMERVIAVGLWCAHPDRCQRPSIRAAMMVLQSSGPMPMLPAKMPVATYAPPVASSEGQLSSSTGMSSSSLTQTAITPR |
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| Function | L-type lectin-domain containing receptor kinase IX.1 [UniProtKB/Swiss-Prot:Q9LXA5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_08g0001670 | OsLima_08g0001670.01 | Chr08 | 1431068 | 1437328 | - | NAM | ||
| CDS seq | atggccggcgtcttgccggcaaccaccacgacgaacaatattgtcgggctcatcttcttcttcttgtccgtcttctgcgacgatctctactcgccggctccagtcgccgtggccttgaccttcaaccacaccaacttcggcccggacgagcagacgaacatcaggcttgaaggcgacgcggccttcagcgccaacgtctccttcagcggcgacggcggcgggtgggttgacatcagcgccaacaggctcgacggcagcatcgaccacagccgtggcagggtgtcgtacgcccttccggtacctctctgggacgccgccaccggcgaggttgccagcttcaccaccggcttctccttcgtcatcaacccgccaaaagaggacggcggcatcaacaacaagggcgccggcatggccttcttcctcgccggcttcccgtcgaggctcccgtccgccggctcctacgcctacaacctcggcctcaccaaccagaccgccgaccaggtggccgccggcgacgaccggttcgtcgccgtggagttcgacaccttcaacgacaccatcgtgcacgaccccgacgccacctacgaccacctcggcgtcgacgtcaactccgtcgtgtccaagaggatcttgaccttgccaagcttcaccctcgtcgggaacatgaccgccgtcgtcgagtacgacaacgtctccagcatcctggccatgaggctgcacctcggctatgggcttagtggcccccgtcaccggccggattacaaccttagctacaaggttgacctcaagagcgtgttgccggagcaggtcgtcgtcggcttctccgccgcgacgtccacatccgtcgagctgcatcagctgcgttcatggtacttcagctcgtcgctggaacccaaggccgcaccgccaccggtggcgccgccgtcaccgtcaccaccgcctacctccggttcaggaagtggcggggttgtagcgggagccaccgtcggcgcagcactgttcgtcgtgctcctcttcgccatggtagcagtcgtcgtactcgtacgacgacgacatcagaggaagaagatgagggaggcggaggaggcgaacgacgacgacgatgacacggaaggcgatcccatcatggagatcgagaacgggacggggccgaggcggttcgcgtaccatgtgctcgtcaacgcaaccaagagcttcgcggcggaggagaagcttggccagggcggattcggcgcagtgtaccggggctatctaagagagcagggcctcgccgtcgccattaagaggttcatcaaagattcctccaaccaagggaggagggagtacaagtcagagatcaaggtcataagccggctacgccaccgcaatctggttcagctcatcggctggtgccatggccgcaacgagctcctcctcgtctacgagctcgtccccaaccgcagccttgacgtccatctctacggcaatggtaccttcctcacatggccaatgaggatcaacattgttattgggctcggatccgccctgctctacctccatgaggagtgggagcaatgtgttgtgcaccgtgacatcaagccaagcaatgtcatgctggatgaatccttcaatacgaagctaggtgacttcggcctcgcaaggctcattgaccatgctgatgggatacagacaatgacgcacccctctgggacgcccggctatattgaccccgaatgtgtgatcactggtaaagcaagtgccgaatctgatgtctacagttttggggttgttttattagaagtggtatgtgcaaggagaccaatgagtctactggatgatcaaaataatggtctcttccgactagtcgagtgggtctgggatctatacggccagggagccattcacaacgcagctgacaagcggctcaacaatgactatgatgtggttgagatggagcgtgtcattgctgtcgggctctggtgtgcgcatccagaccgatgccagcggccatcaatcagagctgctatgatggtcctccagtccagtggaccaatgccgatgctaccagccaagatgcccgtggcaacatatgcaccgccggtggcctcatcagaggggcagctctcgtcatcgacgggtatgtcatcatcaagtttgacacaaacagcaatcacacctcgttag
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| Protein seq | MAGVLPATTTTNNIVGLIFFFLSVFCDDLYSPAPVAVALTFNHTNFGPDEQTNIRLEGDAAFSANVSFSGDGGGWVDISANRLDGSIDHSRGRVSYALPVPLWDAATGEVASFTTGFSFVINPPKEDGGINNKGAGMAFFLAGFPSRLPSAGSYAYNLGLTNQTADQVAAGDDRFVAVEFDTFNDTIVHDPDATYDHLGVDVNSVVSKRILTLPSFTLVGNMTAVVEYDNVSSILAMRLHLGYGLSGPRHRPDYNLSYKVDLKSVLPEQVVVGFSAATSTSVELHQLRSWYFSSSLEPKAAPPPVAPPSPSPPPTSGSGSGGVVAGATVGAALFVVLLFAMVAVVVLVRRRHQRKKMREAEEANDDDDDTEGDPIMEIENGTGPRRFAYHVLVNATKSFAAEEKLGQGGFGAVYRGYLREQGLAVAIKRFIKDSSNQGRREYKSEIKVISRLRHRNLVQLIGWCHGRNELLLVYELVPNRSLDVHLYGNGTFLTWPMRINIVIGLGSALLYLHEEWEQCVVHRDIKPSNVMLDESFNTKLGDFGLARLIDHADGIQTMTHPSGTPGYIDPECVITGKASAESDVYSFGVVLLEVVCARRPMSLLDDQNNGLFRLVEWVWDLYGQGAIHNAADKRLNNDYDVVEMERVIAVGLWCAHPDRCQRPSIRAAMMVLQSSGPMPMLPAKMPVATYAPPVASSEGQLSSSTGMSSSSLTQTAITPR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0123900 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g02990 | RBH | 0.404977 | 0.140327 | 0.354884 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0123900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0001640 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0001650 | RBH | 0.036297 | 0.205663 | 0.294344 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0001680 | RBH | 0.0 | 0.000000 | 0.283639 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0001680 | RBH | 0.000000 | 0.017746 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0001570 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0020400 | SBH | 0.009698 | 0.182514 | 0.006041 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0001460 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0021600 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0001650 | RBH | 0.0 | 1.592978 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0001550 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0001640 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0001580 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G001650 | RBH | 0.0 | 0.198811 | 0.127430 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0001570 | RBH | 0.0 | 0.860954 | 1.354451 |
