Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_05g0006180 | OGI:05015950 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr05:5782080-5785519 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ttacaagcttccaatcttcatcgtcaagatcggtgtggaaggataatgatgatccgaccagtgtcccaaaacctccacccgtgcttcctcgttcagcctaatcgcgtcctccctcttggcgaaatagtagtagtccacctccacgaatcctttgcgagcgtactcgccacgaacccaggcctggaacttggcgaacttagcctcgtcctcgtaggagtcgcgggtccacttgtagaggagcatggtgtactcatccttctcctccggcgacggcaccagggacggcttggcgcgcttcagctcccggaaccaggcgcagacaggctcgttgaactgagcgaggatccagtccacctcctccttgggcagacgccacatcttctacgtatgaagtggaaacataaaaactaccgttggataaaatatagatgtttgagatttatccacgtcatcacaagtaaaaattttactcaactcgcagatttattcctaagtaaaaatttattaggagtaaatttatcctcaaatgttcatttttcgatacaacgatatagttttcagattttcaatgtatatatggtttgcactataaaatttacccatgcgtttgtagtccctgaagtatcatggtgtatgactggaataatattcagtagaatgatttttctatatagttgtcgataaattttctcttctaaaatttcatcatatataaatacactaaaattacttatattacaacttacataaaactgcaatgtaacttgtacgttaaaaccgttaagttaggaatacaaaatatcatagcgtgtacatgggtaaggagatttggtcatagcgacctctgcttcacgaaaataataagttactgtttgagacttttaattacatacaaattatgttgtggttgttactgttggagtgtataaaatgaattgtccgcctttccctatcagcttaggcttttaggtgcaactggctggtgcatgcaacttaatatggtatcagagccagaggtctcgagttcgaatcctgactggcgtgcaattaaataaaataattgcagcccactccaatattccacgcttgagacttgagggggagggttggagtgtataaagtgaattgtccgcctttccctatcagcttaggcttttatgtgcaactggctggtacatacaacttaatagttacaatttaattactctatgattgtcttatatttgaacctcccaaataaatttttaggagaaaatttatcaaccaatgtatagctagacccccgtagaatcaaccaaaatattagcacaagaaatatcttggcaggaactcttgcagttagttctcgccgacaaaattatctatatccaagatcttcatttctccacgtggactttgtttctttaaattgtgcaatcagtccataggaatctaatgtttaagtttagtttcaatgtcgtctaatgaaactcctgatgtctgatttcgttgattcgtccaactgagagcaggaaaaaaaatcacactccagtcattcccaataagaagcaaatactctcaaggggactacgagcgtaaaagaatcagacaggcgctactcgcactcgcaggtagtcaatttcagcggtatattctgcagtcaacactaccgtttaccagctaattatgttcatcgactgggaatctgggatgctatccatgttgagcttggttattttgttatttgtgctctaatatttgatctgcttttttttcaatactaagaccataatatttggggttatgtaccacctgccaagactattattgtggttttgtgtaattcacggtttgtatcaaacttactccttgctccaacccacaaattctctgaaacacgtacgagagggaaaaactgactgcgttggaaagaaaagaactttcatgctattgctgactgcaaacatatcgtctttcatgaagatgacataaagtaacggcatagactggatgttgcaagtccatactactatattcatgtccgtaaagcaaaacattgcatactaatgaaaaacggttctcagctgttttggccttgcagaggcggttctgaagaattctgaatctccatatacattttggcagtgcagtaaattcttggagagaagagataaattttcggcaacggtagacaaacaacaaaaatttctcccgaaatcaatattcagaagacatcagaaaaacatgcagtctttacaaattgaccagatgcatatttgcactacaccaatttacatcagccccgaactgcaatctgaaccacccaaagtttgagccctaaaaatctcatctttagaccacaccatgaccaaaaccttttgtggatccaagaatcgagttacggacctttggctgctcagattaaagcacagtgAaaaaatgtatatatctaaattggcaggatattaattagttccatccgacatctgagaaaatttgctttgaacatttgaaaagcttagttgcgattccaactatgagtttctgatgaaaatactataactcatatactatatcattaacccgtccgatcacattagcaaccgattagtgaaaagattggacttttcttttacatgagctctgaactataggagggaagcttcctgcaccaaaaggggaaggggaaggctaattggctaaatggctgtcgaatgattttctatagctaaatcattcatgtttcaatttgaccaaaaaaatttgaccaccaagagaagagaatgacagttgatgaaaacataggacacttcaaaataatttctctgccagacagagaatggaagcacaaagtgaatcatacacatacagaggtgaattgatttgttcactacaaaagcttagttccttctgttgaatcgggaaattgcggaccgttgatcaaatcgttctagaattgatcttacaagcttccaatcttcatcgtcaaggtcggtgtgggaaggatgatgacgatctgaccagtgccccAaaacctcctcccgtgcttcctcgttcagcctaatcgcctcctccctcttggcgaaatagtcatagtccacctccacaaatcctttgcgagcgtactcgccccgaacccagacctggaacttggcgtacttagcctcgtcctcgtaggattcgcgggtgcactcgtagagaagcatggtgtactcgtccttctcctcctccggcgacggcaccagcgacgggttggcgcgcttcagctcccggaacctggcgcagatgggctcgttcgactgggcgaggatccagtccacctcctccttgggcagcagccacatcttcttcttctttgatggatgagccagggcatcgtcctctcctccgtccagggcggaagactccccttttctcttcttggtaggggagacggaaacggtgacctcgccgccggccat
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| CDS seq | atggccggcggcgaggtcaccgtttccgtctcccctaccaagaagagaaaaggggagtcttccgccctggacggaggagaggacgatgccctggctcatccatcaaagaagaagaagatgtggctgctgcccaaggaggaggtggactggatcctcgcccagtcgaacgagcccatctgcgccaggttccgggagctgaagcgcgccaacccgtcgctggtgccgtcgccggaggaggagaaggacgagtacaccatgcttctctacgagtgcacccgcgaatcctacgaggacgaggctaagtacgccaagttccaggtctgggttcggggcgagtacgctcgcaaaggatttgtggaggtggactatgactatttcgccaagagggaggaggcgattaggctgaacgaggaagcacgggaggaggtttTggggcactggtcagatcgtcatcatccttcccacaccgaccttgacgatgaagattggaagcttcctgtctgcgcctggttccgggagctgaagcgcgccaagccgtccctggtgccgtcgccggaggagaaggatgagtacaccatgctcctctacaagtggacccgcgactcctacgaggacgaggctaagttcgccaagttccaggcctgggttcgtggcgagtacgctcgcaaaggattcgtggaggtggactactactatttcgccaagagggaggacgcgattaggctgaacgaggaagcacgggtggaggttttgggacactggtcggatcatcattatccttccacaccgatcttgacgatgaagattggaagcttgtaa
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| Protein seq | MAGGEVTVSVSPTKKRKGESSALDGGEDDALAHPSKKKKMWLLPKEEVDWILAQSNEPICARFRELKRANPSLVPSPEEEKDEYTMLLYECTRESYEDEAKYAKFQVWVRGEYARKGFVEVDYDYFAKREEAIRLNEEAREEVLGHWSDRHHPSHTDLDDEDWKLPVCAWFRELKRAKPSLVPSPEEKDEYTMLLYKWTRDSYEDEAKFAKFQAWVRGEYARKGFVEVDYYYFAKREDAIRLNEEARVEVLGHWSDHHYPSTPILTMKIGSL |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_05g0006180 | OsLima_05g0006180.01 | Chr05 | 5782080 | 5785519 | - | NAM | ||
| CDS seq | atggccggcggcgaggtcaccgtttccgtctcccctaccaagaagagaaaaggggagtcttccgccctggacggaggagaggacgatgccctggctcatccatcaaagaagaagaagatgtggctgctgcccaaggaggaggtggactggatcctcgcccagtcgaacgagcccatctgcgccaggttccgggagctgaagcgcgccaacccgtcgctggtgccgtcgccggaggaggagaaggacgagtacaccatgcttctctacgagtgcacccgcgaatcctacgaggacgaggctaagtacgccaagttccaggtctgggttcggggcgagtacgctcgcaaaggatttgtggaggtggactatgactatttcgccaagagggaggaggcgattaggctgaacgaggaagcacgggaggaggtttTggggcactggtcagatcgtcatcatccttcccacaccgaccttgacgatgaagattggaagcttcctgtctgcgcctggttccgggagctgaagcgcgccaagccgtccctggtgccgtcgccggaggagaaggatgagtacaccatgctcctctacaagtggacccgcgactcctacgaggacgaggctaagttcgccaagttccaggcctgggttcgtggcgagtacgctcgcaaaggattcgtggaggtggactactactatttcgccaagagggaggacgcgattaggctgaacgaggaagcacgggtggaggttttgggacactggtcggatcatcattatccttccacaccgatcttgacgatgaagattggaagcttgtaa
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| Protein seq | MAGGEVTVSVSPTKKRKGESSALDGGEDDALAHPSKKKKMWLLPKEEVDWILAQSNEPICARFRELKRANPSLVPSPEEEKDEYTMLLYECTRESYEDEAKYAKFQVWVRGEYARKGFVEVDYDYFAKREEAIRLNEEAREEVLGHWSDRHHPSHTDLDDEDWKLPVCAWFRELKRAKPSLVPSPEEKDEYTMLLYKWTRDSYEDEAKFAKFQAWVRGEYARKGFVEVDYYYFAKREDAIRLNEEARVEVLGHWSDHHYPSTPILTMKIGSL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0193700 | SBH | 0.0 | 0.000000 | 0.959714 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g10480 | RBH | 0.708815 | 0.0 | 0.713926 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0193700 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0006220 | RBH | 0.0 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0006260 | RBH | 0.0 | 0.0 | 0.389549 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0006150 | RBH | 0.0 | 0.000000 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0006210 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0006270 | RBH | 0.0 | 0.0 | 2.383265 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0086700 | RBH | 0.5131515 | 1.055141 | 0.265336 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0006100 | RBH | 0.326124 | 0.0 | 0.212093 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0086000 | RBH | 0.510737 | 1.127435 | 1.423599 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0006210 | SBH | 0.0 | 0.026982 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0006120 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0006200 | RBH | 2.797391 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0006270 | RBH | 0.0 | 0.291486 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0006240 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G006040 | RBH | 0.0 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0006270 | RBH | 0.0 | 0.000000 | 0.747085 |
