Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_04g0006870 | OGI:04043860 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr04:14010886-14014493 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcatataaatggggtaaatggtgattctgatgtctcatagaaattgtttgttacgtcagaatcagaagaaactaattctgtatggagaaacaaaatatctctcatttccgacgcaaatagtttttttttttgaatttcgaaataaaggttcttgtcttgtgggtaacggtgcacaaatttttggaatccagtaccaacaggtataatcccccccagaactacgttttctttcaggcctttcaaccaatcaatacgacctcgtaaggcagcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattaagggaaaCccttgttattcccaataagattgcccgataatagatcgattcatccaaagcccgccctgctcgctctgctcgcaatagtccaattaattccccaggtgaaaaaacattagacattccatcttcggaaacccgcacttttgatgttacttggcgtataataatctctatatgtctattatggatctgtaccccttgggatcgataaaccttttggattttattaaccaaagagatacgactttgggctatggttaactcagctccaatcaagaatccccaaggacccccaagaattcttggtatacgctcattccaatcctcaattctcctttcgagattcggcgatagtgaatcaattgaacgcgcttcgaagatttgttctacttttggaagaccttgcgttatgtcactagatctcgctttttcgtatataaacgtaactaacttatcccctttgtaaaggatttctccataatgaccatgaacagttgctcctgtagtggccaaataaggcttagctgctcttataacaaaggaatctatatttacaatgaaaatttgacctgaTttttttatgtgcgatttaaatagacatacattttcgcaaataaattgtccaaggtgaatttttgctgatgtctcttcccaagaatcatgagggagaaagtgtcaatttaactggaatggatccaacatgatgttactatcgaaatttgaagtcctttgattttcatttattaaagagtgtttaagtccttgaagtactttgaagttttgtttcaaattgtcaaggagcaaatgctttttaacaggatctgattatacgttagtaaatagtaagatgaagaaaaattcgatatactaggtgcaatagtacctaagagtcccgaaaaatttcgaaagagccccaaaaattttggaataggaattctaggattcgattcttttaccccattgggattttttgaattcttaaaaaaaccaattcgagaacagttggatgccgacaaaaccatcaaagattggtattctttatttcgattcaacaaggtaccaatagcttcttgatgttggctaagtgattgaatcttcgccttggaataaaaggaattggtattggtgcgatctaacctattatggagaatcagtcctgcacttctgctatcatacctttttcgtgtatacgaaatagtggatttgattaacccaattcttaggaaatcgcgaatcagaccatttgctcttatctcaacaagggaagcgcgagcctccTctttttcttcttgttcccaattcaatactaagcaagttcgaacgaattgactattcgtatgataaattctttgagttaacttgctattttcatgagaaataaaattgacaagtcgaagttggagattaccctcttcctgcaagagatcctgtgggaaaagtgttgctaaatttctcccttcgttcatttcatacgcgactgcaggtcgaaccaaaacaaaatacttttccttgctcttgagaatttttttccactgaacatagacccaattttcccttttttttgattccttcgaatcttttttttctctttctagtggtatcaaactgccacctaatatcttatccgcctcttcaggaaaatgaatatctccagaaaagatttttagttccgtatggcttttttttctcttcactcgaaccaatccacccagccgacttcttgtattttttgtgagttgtgtatccactccaataatactattgtcaagtacctttagggatgaggatctcggcaagatatgcagttcttggagaatgaaaaaaaaccgatctacttctttttggtattttagactaaattcTtttTGTTCCTCGATGCTCAATCAAAACCCCCTTTTTTAAGACGGAATCTTCCTTCGGGTACCCATATTCGTCCTCTGAGTCTTCCTCTGAGTCTTCCTCTAAAGTCCCATGTTCGTCCTCTGAGTCTTCCTCTAAAGTGCCATATTTATCCTCTCGGGGCCTATATTTGTTCTCCGGACTCCCATATTCGTCGTCGGATTCCTCCTCTCGAGTTCTATATTCGTCCTCTAGGATTCCATATTCATCTTCTAGGGTTTCATATTCGTTCTCTGGGATCCCATATTCATCTTCTAGGGTTTCATACTCCTCCTCTCGAGTCCTATATTCGTCTTCTAGGGTTTTACATTtTCTTCCTCTCGGGTCCTATAGTCGTTTTCTGGGCTCCCGTATTCGTTCTCTGAGTCTTTCTCTCAAGTCCTATATTCGTCCTCTAGGGTCCTATATCAAAATTTAACAATTCCTGAACCCTTTTTATCTTTTTTGTGTCGTGGGTCGTCAAAATAAGCAACTATAGTATTTCTACGTAAAACACCCATAAAGGGTATTTCAATCGAAATCCCAAAACAGGATATTGGTTCTTTCTCTTGTTCTTGATGATACTGTAATGGAATGGCAAACCTATTTCTTCGCTTTTTCGCTAACAAATCAAAATTATTTTGAAGAATAGAAGGATAGACAAAATTCCAATGACCATTGGACATGATTCGATCCGGCGTTGAATAATCAAGAATTTCCCTATCTTTTTTACCAAAAGTATCCAACAGTCTATGTCTTACCTCATCATCAGCCATCGAGAGGCCAAAGATATACCTTCCGTCAACAGAAAAGGAATAAGTATTCATTTGATCTTGATCCTTGTGGAGCGAAAAAGAAGCTATACTAGATCTGCACATACTTACTGACAATATCCATAAATGGCTTGTTTTTGGTAATCGACGAAGATTACCATATTGATATTCGGGCGCATGATAAACATTGGTACTCCAGTGCATTTCCCCATCTGATTCGGAATAAATATGTTTTTGTACCTTTTCTTTAAAATGCAAAGCGGATGTTCCGGCACGAATCTCCGCAATTACTTGTTCGGATTCTACATATTGATCATTTTGCACTAGAATCAAGCTTTTTGAAGGAATAGTCACACTATGTAGAATATCCTGACTCTGAATAGTTATATGCAAGTCTATATAACATAGAAAAGCAGGCTGCCCATGACGGGTACGTGTgtggggtgaaccaaatccccattgaattggatttttccatttgaaggggatcgtacaaggtcggcagtaccccctgtgaataccccaccagtatgaaaagttcttaatgttagttgagtccctggctccccaatagattgacccgcaagaacacctacagcttcccccaattcgaccagatcgcca
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| CDS seq | ATGGGGAAATGCACTGGAGTACCAATGTTTATCATGCGCCCGAATATCAATATGAGGACGAATATAGGACTTGAGAGAAAGACTCAGAGAACGAATACGGGAGCCCAGAAAACGACTATAGGACCCGAGAGGAAGAaAATGACTCGAGAGGAGGAGTATGAAACCCTAGAAGATGAATATGGGATCCCAGAGAACGAATATGAAACCCTAGAAGATGAATATGGAATCCTAGAGGACGAATATAGAACTCGAGAGGAGGAATCCGACGACGAATATGGGAGTCCGGAGAACAAATATAGGCCCCGAGAGGATAAATATGGCACTTTAGAGGAAGACTCAGAGGACGAACATGGGACTTTAGAGGAAGACTCAGAGGAAGACTCAGAGGACGAATATGGGTACCCGAAGGAAGATTCCGTCTTAAAAAAGGGGgtacttgacaatagtattattggagtggatacacaactcacaaaaaatacaagaagtcggctgggtggattggttcgagtgaagagaaaaaaaagccatacggaactaaaaatcttttctggagatattcattttcctgaagaggcggataagatattaggtggcagtttgataccactagaaagagaaaaaaaagattcgaaggaatcaaaaaaaagggaaaattgggtctatgttcagtggaaaaaaattctcaagagcaaggaaaagtattttgttttggttcgacctgcagtcgcgtatgaaatgaacgaagggagaaatttagcaacacttttcccacaggatctcttgcaggaagagggtaatctccaacttcgacttgtcaattttatttctcatgaaaatagcaagttaactcaaagaatttatcatacgaatagtcaattcgttcgaacttgcttagtattgaattgggaacaagaagaaaaagAggaggctcgcgcttcccttgttgagataagagcaaatgctaagccttatttggccactacaggagcaactgttcatggtcattatggagaaatcctttacaaaggggataagttagttacgtttatatacgaaaaagcgagatctagtgacataacgcaaggtcttccaaaagtagaacaaatcttcgaagcgcgttcaattgattcactatcgccgaatctcgaaaggagaattgaggattggaatgagcgtataccaagaattcttgggggtccttggggattcttgattggagctgagttaaccatagcccaaagtcgtatctctttggttaataaaatccaaaaggtttatcgatcccaaggggtacagatccataatagacatatagagattattatacgccaagtaacatcaaaagtgcgggtttccgaagatggaatgtctaatgttttttcacctggggaattaattggactattgcgagcagagcgagcagggcgggctttggatgaatcgatctattatcgggcaatcttattgggaataacaaggGtttcccttaatacccaaagtttcatatctgaagcaagttttcaagaaactgctcgagttttagcaaaagctgccttacgaggtcgtattgattggttgaaaggcctgaaagaaaacgtagttctgggggggattatacctgttggtactggattccaaaaatttgtgcaccgttacccacaagacaagaacctttatttcgaaattcaaaaaaaaaaactatttgcgtcggaaatgagagatattttgtttctccatacagaattagtttcttctgattctgacgtaacaaacaatttctatgagacatcagaatcaccatttaccccatttatatga
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| Protein seq | MGKCTGVPMFIMRPNINMRTNIGLERKTQRTNTGAQKTTIGPERKKMTREEEYETLEDEYGIPENEYETLEDEYGILEDEYRTREEESDDEYGSPENKYRPREDKYGTLEEDSEDEHGTLEEDSEEDSEDEYGYPKEDSVLKKGVLDNSIIGVDTQLTKNTRSRLGGLVRVKRKKSHTELKIFSGDIHFPEEADKILGGSLIPLEREKKDSKESKKRENWVYVQWKKILKSKEKYFVLVRPAVAYEMNEGRNLATLFPQDLLQEEGNLQLRLVNFISHENSKLTQRIYHTNSQFVRTCLVLNWEQEEKEEARASLVEIRANAKPYLATTGATVHGHYGEILYKGDKLVTFIYEKARSSDITQGLPKVEQIFEARSIDSLSPNLERRIEDWNERIPRILGGPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFSPGELIGLLRAERAGRALDESIYYRAILLGITRVSLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKFVHRYPQDKNLYFEIQKKKLFASEMRDILFLHTELVSSDSDVTNNFYETSESPFTPFI |
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| Function | DNA-directed RNA polymerase subunit beta'' [UniProtKB/Swiss-Prot:P0C508] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0006870 | OsLima_04g0006870.01 | Chr04 | 14010886 | 14014493 | - | NAM | ||
| CDS seq | ATGGGGAAATGCACTGGAGTACCAATGTTTATCATGCGCCCGAATATCAATATGAGGACGAATATAGGACTTGAGAGAAAGACTCAGAGAACGAATACGGGAGCCCAGAAAACGACTATAGGACCCGAGAGGAAGAaAATGACTCGAGAGGAGGAGTATGAAACCCTAGAAGATGAATATGGGATCCCAGAGAACGAATATGAAACCCTAGAAGATGAATATGGAATCCTAGAGGACGAATATAGAACTCGAGAGGAGGAATCCGACGACGAATATGGGAGTCCGGAGAACAAATATAGGCCCCGAGAGGATAAATATGGCACTTTAGAGGAAGACTCAGAGGACGAACATGGGACTTTAGAGGAAGACTCAGAGGAAGACTCAGAGGACGAATATGGGTACCCGAAGGAAGATTCCGTCTTAAAAAAGGGGgtacttgacaatagtattattggagtggatacacaactcacaaaaaatacaagaagtcggctgggtggattggttcgagtgaagagaaaaaaaagccatacggaactaaaaatcttttctggagatattcattttcctgaagaggcggataagatattaggtggcagtttgataccactagaaagagaaaaaaaagattcgaaggaatcaaaaaaaagggaaaattgggtctatgttcagtggaaaaaaattctcaagagcaaggaaaagtattttgttttggttcgacctgcagtcgcgtatgaaatgaacgaagggagaaatttagcaacacttttcccacaggatctcttgcaggaagagggtaatctccaacttcgacttgtcaattttatttctcatgaaaatagcaagttaactcaaagaatttatcatacgaatagtcaattcgttcgaacttgcttagtattgaattgggaacaagaagaaaaagAggaggctcgcgcttcccttgttgagataagagcaaatgctaagccttatttggccactacaggagcaactgttcatggtcattatggagaaatcctttacaaaggggataagttagttacgtttatatacgaaaaagcgagatctagtgacataacgcaaggtcttccaaaagtagaacaaatcttcgaagcgcgttcaattgattcactatcgccgaatctcgaaaggagaattgaggattggaatgagcgtataccaagaattcttgggggtccttggggattcttgattggagctgagttaaccatagcccaaagtcgtatctctttggttaataaaatccaaaaggtttatcgatcccaaggggtacagatccataatagacatatagagattattatacgccaagtaacatcaaaagtgcgggtttccgaagatggaatgtctaatgttttttcacctggggaattaattggactattgcgagcagagcgagcagggcgggctttggatgaatcgatctattatcgggcaatcttattgggaataacaaggGtttcccttaatacccaaagtttcatatctgaagcaagttttcaagaaactgctcgagttttagcaaaagctgccttacgaggtcgtattgattggttgaaaggcctgaaagaaaacgtagttctgggggggattatacctgttggtactggattccaaaaatttgtgcaccgttacccacaagacaagaacctttatttcgaaattcaaaaaaaaaaactatttgcgtcggaaatgagagatattttgtttctccatacagaattagtttcttctgattctgacgtaacaaacaatttctatgagacatcagaatcaccatttaccccatttatatga
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| Protein seq | MGKCTGVPMFIMRPNINMRTNIGLERKTQRTNTGAQKTTIGPERKKMTREEEYETLEDEYGIPENEYETLEDEYGILEDEYRTREEESDDEYGSPENKYRPREDKYGTLEEDSEDEHGTLEEDSEEDSEDEYGYPKEDSVLKKGVLDNSIIGVDTQLTKNTRSRLGGLVRVKRKKSHTELKIFSGDIHFPEEADKILGGSLIPLEREKKDSKESKKRENWVYVQWKKILKSKEKYFVLVRPAVAYEMNEGRNLATLFPQDLLQEEGNLQLRLVNFISHENSKLTQRIYHTNSQFVRTCLVLNWEQEEKEEARASLVEIRANAKPYLATTGATVHGHYGEILYKGDKLVTFIYEKARSSDITQGLPKVEQIFEARSIDSLSPNLERRIEDWNERIPRILGGPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFSPGELIGLLRAERAGRALDESIYYRAILLGITRVSLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGFQKFVHRYPQDKNLYFEIQKKKLFASEMRDILFLHTELVSSDSDVTNNFYETSESPFTPFI
More
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0006870 | OsLima_04g0006870.02 | Chr04 | 14012810 | 14013107 | - | IsoSeq | ||
| CDS seq | TTGATTGAGCATCGAGGAACAaaaAga |
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| Protein seq | LIEHRGTKR |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.969238 | 1.685488 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g24339AA | RBH | 30.964777 | 28.905397 | 20.179388 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0005530 | RBH | 30.798918 | 35.496479 | 87.726944 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0016330 | RBH | 22.888201 | 0.000000 | 25.745274 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0215400 | RBH | 133.02441 | 85.9730605 | 70.882473 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0010140 | SBH | 19.993303 | 3.172808 | 14.216101 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0217600 | RBH | 54.0491695 | 22.280471 | 16.042816 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0007160 | RBH | 13.801538 | 57.014614 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0007250 | RBH | 239.870590 | 232.471237 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0007070 | RBH | 0.492714 | 0.127231 | 0.719051 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0007360 | RBH | 3.356486 | 12.231203 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G007060 | RBH | 0.711099 | 1.003298 | 2.325844 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0007140 | RBH | 18.133957 | 88.606613 | 51.332848 |
