Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_02g0007890 | OGI:02016430 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr02:5750266-5751813 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggccagcgacgccatcgtctccggcgtcgtcgccgacatggtcggcaggctcatgtccctcgtcgccggccagctgcgcgaccggcggggcgacgccgaggagaagctgcgcaggctgcggcgcctcgtcgtcaggatcgagagcgcggtggaggccgccgaggcgaggcggatcaccggccgcgcgctcctcgcgtggctctccgagctcgtcgacggcgcgctccagggccgctacttcctcgacgcgttccccgtggcgacggatcacgacggcggcgggcgcggcgaggcggcggtggcgaacccgctcaacccggccaagcggctgcgcgtcgcggcgaggaggctggtgttctgggacggcggcgcggctgcggagctcgacggcgtccttgccgacctggagagcgtctccggcgatctcaccgggttcatcacgatgctgcagagctgcccgccggcgctgcaccggccgctgaacacgaacatctacgccgacagccagatgtttggccggcaggtcgagaggcgccgcgtcttcgacttcttgctgcatgacagcgacggcgatggcggcggcgagccggcgggggcagagctcgccgtcctctcgatagttggccgccaaggcctcgggaagacgacgctcgtgcagcacgtctgcaacgacctcgaggtgcgccgccgcttctcgctgatcattgagctggacttccattgcttgagcctcatggcggccggcgagacggcgctgctcctgcgctccatgttcgccggcaccggcggcgcggcgagcgccaccaccaccagcgtgttcggcgacagcggcgagacgctggcactcctcgagcggaggctgcgcggggtgaggttcctcgccgtgttcgacggcgtcgacgcgcggaggcggcgggtgatcgacgcgatcatgccgacgctgcggcgcggccggcgagggagcaaggtcatcgtgacgagcaggcacgccgagcacgtcgcgggcctcgccgccgccgccgcggacaccatcaccctccgccccccgccgccggcggagtactggctcttcttcaaggcgcacgcgttcggcggcgcggacgccgaggccgacccgcggctggtggcggcggggcaggccatcgccaagcggctgcgcctcgccgcctccttcttcggcggcaagatgctcgccgcgctgctgcggtcgcgccccgacccgcgcttctggcgcaccgtgctgagcagcggcgccgccgacctgccgtgcctcggctacgccgacgacgccgtcgccggccgcctgttcccgccgcacgtcaccttgcagagcgtcaccatgtcgcgctcgccggagagaggcatcgtcagtctccaggactcctgtttggttactcctccggcgactcagtccggcgatcaccgccgccgccgccgctcgccggagttgcccgtgttgctgtgcaagtcagtcttcccttcctactgcatctactacactgctcattgcacgatcagtgacagtgacactgacaacaaacaatga
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| CDS seq | atggccagcgacgccatcgtctccggcgtcgtcgccgacatggtcggcaggctcatgtccctcgtcgccggccagctgcgcgaccggcggggcgacgccgaggagaagctgcgcaggctgcggcgcctcgtcgtcaggatcgagagcgcggtggaggccgccgaggcgaggcggatcaccggccgcgcgctcctcgcgtggctctccgagctcgtcgacggcgcgctccagggccgctacttcctcgacgcgttccccgtggcgacggatcacgacggcggcgggcgcggcgaggcggcggtggcgaacccgctcaacccggccaagcggctgcgcgtcgcggcgaggaggctggtgttctgggacggcggcgcggctgcggagctcgacggcgtccttgccgacctggagagcgtctccggcgatctcaccgggttcatcacgatgctgcagagctgcccgccggcgctgcaccggccgctgaacacgaacatctacgccgacagccagatgtttggccggcaggtcgagaggcgccgcgtcttcgacttcttgctgcatgacagcgacggcgatggcggcggcgagccggcgggggcagagctcgccgtcctctcgatagttggccgccaaggcctcgggaagacgacgctcgtgcagcacgtctgcaacgacctcgaggtgcgccgccgcttctcgctgatcattgagctggacttccattgcttgagcctcatggcggccggcgagacggcgctgctcctgcgctccatgttcgccggcaccggcggcgcggcgagcgccaccaccaccagcgtgttcggcgacagcggcgagacgctggcactcctcgagcggaggctgcgcggggtgaggttcctcgccgtgttcgacggcgtcgacgcgcggaggcggcgggtgatcgacgcgatcatgccgacgctgcggcgcggccggcgagggagcaaggtcatcgtgacgagcaggcacgccgagcacgtcgcgggcctcgccgccgccgccgcggacaccatcaccctccgccccccgccgccggcggagtactggctcttcttcaaggcgcacgcgttcggcggcgcggacgccgaggccgacccgcggctggtggcggcggggcaggccatcgccaagcggctgcgcctcgccgcctccttcttcggcggcaagatgctcgccgcgctgctgcggtcgcgccccgacccgcgcttctggcgcaccgtgctgagcagcggcgccgccgacctgccgtgcctcggctacgccgacgacgccgtcgccggccgcctgttcccgccgcacgtcaccttgcagagcgtcaccatgtcgcgctcgccggagagaggcatcgtcagtctccaggactcctgtttggttactcctccggcgactcagtccggcgatcaccgccgccgccgccgctcgccggagttgcccgtgttgctgtgcaagtcagtcttcccttcctactgcatctactacactgctcattgcacgatcagtgacagtgacactgacaacaaacaatga
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| Protein seq | MASDAIVSGVVADMVGRLMSLVAGQLRDRRGDAEEKLRRLRRLVVRIESAVEAAEARRITGRALLAWLSELVDGALQGRYFLDAFPVATDHDGGGRGEAAVANPLNPAKRLRVAARRLVFWDGGAAAELDGVLADLESVSGDLTGFITMLQSCPPALHRPLNTNIYADSQMFGRQVERRRVFDFLLHDSDGDGGGEPAGAELAVLSIVGRQGLGKTTLVQHVCNDLEVRRRFSLIIELDFHCLSLMAAGETALLLRSMFAGTGGAASATTTSVFGDSGETLALLERRLRGVRFLAVFDGVDARRRRVIDAIMPTLRRGRRGSKVIVTSRHAEHVAGLAAAAADTITLRPPPPAEYWLFFKAHAFGGADAEADPRLVAAGQAIAKRLRLAASFFGGKMLAALLRSRPDPRFWRTVLSSGAADLPCLGYADDAVAGRLFPPHVTLQSVTMSRSPERGIVSLQDSCLVTPPATQSGDHRRRRRSPELPVLLCKSVFPSYCIYYTAHCTISDSDTDNKQ |
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| Function | Disease resistance protein RGA2 [UniProtKB/Swiss-Prot:Q7XBQ9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0007890 | OsLima_02g0007890.01 | Chr02 | 5750266 | 5751813 | + | NAM | ||
| CDS seq | atggccagcgacgccatcgtctccggcgtcgtcgccgacatggtcggcaggctcatgtccctcgtcgccggccagctgcgcgaccggcggggcgacgccgaggagaagctgcgcaggctgcggcgcctcgtcgtcaggatcgagagcgcggtggaggccgccgaggcgaggcggatcaccggccgcgcgctcctcgcgtggctctccgagctcgtcgacggcgcgctccagggccgctacttcctcgacgcgttccccgtggcgacggatcacgacggcggcgggcgcggcgaggcggcggtggcgaacccgctcaacccggccaagcggctgcgcgtcgcggcgaggaggctggtgttctgggacggcggcgcggctgcggagctcgacggcgtccttgccgacctggagagcgtctccggcgatctcaccgggttcatcacgatgctgcagagctgcccgccggcgctgcaccggccgctgaacacgaacatctacgccgacagccagatgtttggccggcaggtcgagaggcgccgcgtcttcgacttcttgctgcatgacagcgacggcgatggcggcggcgagccggcgggggcagagctcgccgtcctctcgatagttggccgccaaggcctcgggaagacgacgctcgtgcagcacgtctgcaacgacctcgaggtgcgccgccgcttctcgctgatcattgagctggacttccattgcttgagcctcatggcggccggcgagacggcgctgctcctgcgctccatgttcgccggcaccggcggcgcggcgagcgccaccaccaccagcgtgttcggcgacagcggcgagacgctggcactcctcgagcggaggctgcgcggggtgaggttcctcgccgtgttcgacggcgtcgacgcgcggaggcggcgggtgatcgacgcgatcatgccgacgctgcggcgcggccggcgagggagcaaggtcatcgtgacgagcaggcacgccgagcacgtcgcgggcctcgccgccgccgccgcggacaccatcaccctccgccccccgccgccggcggagtactggctcttcttcaaggcgcacgcgttcggcggcgcggacgccgaggccgacccgcggctggtggcggcggggcaggccatcgccaagcggctgcgcctcgccgcctccttcttcggcggcaagatgctcgccgcgctgctgcggtcgcgccccgacccgcgcttctggcgcaccgtgctgagcagcggcgccgccgacctgccgtgcctcggctacgccgacgacgccgtcgccggccgcctgttcccgccgcacgtcaccttgcagagcgtcaccatgtcgcgctcgccggagagaggcatcgtcagtctccaggactcctgtttggttactcctccggcgactcagtccggcgatcaccgccgccgccgccgctcgccggagttgcccgtgttgctgtgcaagtcagtcttcccttcctactgcatctactacactgctcattgcacgatcagtgacagtgacactgacaacaaacaatga
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| Protein seq | MASDAIVSGVVADMVGRLMSLVAGQLRDRRGDAEEKLRRLRRLVVRIESAVEAAEARRITGRALLAWLSELVDGALQGRYFLDAFPVATDHDGGGRGEAAVANPLNPAKRLRVAARRLVFWDGGAAAELDGVLADLESVSGDLTGFITMLQSCPPALHRPLNTNIYADSQMFGRQVERRRVFDFLLHDSDGDGGGEPAGAELAVLSIVGRQGLGKTTLVQHVCNDLEVRRRFSLIIELDFHCLSLMAAGETALLLRSMFAGTGGAASATTTSVFGDSGETLALLERRLRGVRFLAVFDGVDARRRRVIDAIMPTLRRGRRGSKVIVTSRHAEHVAGLAAAAADTITLRPPPPAEYWLFFKAHAFGGADAEADPRLVAAGQAIAKRLRLAASFFGGKMLAALLRSRPDPRFWRTVLSSGAADLPCLGYADDAVAGRLFPPHVTLQSVTMSRSPERGIVSLQDSCLVTPPATQSGDHRRRRRSPELPVLLCKSVFPSYCIYYTAHCTISDSDTDNKQ
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.073719 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0199200 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g10580 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0199200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0007570 | RBH | 0.122723 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0007720 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0007500 | RBH | 0.327010 | 0.0 | 0.212439 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0007460 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0007530 | RBH | 0.0 | 0.0 | 0.365231 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0093300 | RBH | 1.695826 | 2.364202 | 1.597079 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0007470 | RBH | 0.0 | 0.0 | 0.059844 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0096900 | RBH | 1.775366 | 3.1809935 | 5.5433795 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0007490 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0007780 | RBH | 1.143863 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0007770 | RBH | 0.0 | 0.0 | 0.028069 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0007530 | RBH | 0.265430 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G007630 | RBH | 0.0 | 0.0 | 0.144975 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0007640 | RBH | 0.302940 | 0.0 | 0.0 |
