Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_01g0030870 | OGI:01091000 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr01:31623607-31629575 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgccgggggcgggagggaagaagtcgccgtgggcgtcgggggagaggcggccgcacttcttcaaggtgctcgtcggcgacttcaagcagcgcctggtgagtgcacgagtgccggttagccagcctttgtctggcatatgtgcacttagcttacacttgttgccatcgtgcgaaatatggcgatcacaattttggatcgggacgatggctagccaatactttgcgcagagagaattcgtcacgctagcatgcatgcatgcattttctgcaaagcgagctttgcatgcgttgcgtagtctcgaaacaatctgttatatgcaccatgcaagtctcgaaataatgtcatttgtgtatatatatatgcatcatgcatgcatgtgtgaataatgcagaaaatcccgccaaacttctgcaagcacatcccctgggaggagtcgaggaaggccaagggcctgaaggaggcgtccatggcggccaccctggaggggcccagcggccggacgtggctggtcgtcatccgccggacggccgagggcaccttcttcacctccggctggcccaagttcgtgcaggaccaggcgctgcgcgaactcgagttcgtcgtgttccgctacgacggcaacacgcgcttcaccgcgatggtgttcgacaggacggcgtgcgagcgggaggacctgatgggaggcggcggcggcgaccggccgcgcaagaaacggggtcgccctaggacggccgccgcctcgcgtgatgccgcgcggcccaagaaggattcggttgggaaggagatggtgacgtaccgcgcgtcgcctagtggtggccagccgttgcaaatcgtggattccagttggacaccggaaccaggtaagaaaagaaccactattatacagtatactccctctaaaaaaaatcatttcaaataatgtttaagtcaaaccttaaaaatataaatcatgaataactctcaagttgttgagtttgaaaatataaaaattacatgaatagatttgtcttgaaaaatactttcatcaaaatatacatatatcaTttttttaataaatatttttatagaaacaagaagttaaagttgttttttagagaccgtgtcgctgtccaaaacgatttcctttacgggtacggagggagtatatactgtctccgtcacatattacctgtcgctttgagttttttttataatgtttgatcattcgtcttattcaaaaaaaattggaattattatttattttgtccgtgacttgttttattatcaaaaatactttaagtatgatttatctatttttatatttgcactatttttttaaataaaatgaatggtcaaatgttacaagcaaaaggttaaagtgacaagtaatatgggacggaggtagtattaatttactccatccgtctcgcggtacagaatgttttggtttgtgtaactcggttgacaaatataaaagtatagtaatatatgcaacactgaattaataatttataaattctactagtaaatattcgtttcgtcttaaaagtgttgctgaatcctcctgtaaactttataaagttaactaaatttaaagaagtttgatttagatccaaaatgacaagatatgaaatgggaggagtagtgatctatttattatactagaagattccccgcgcgttgcagtgaaaattttagcagtaagataagtatgatatttatcacatatcgtagaacaaaaataatatgtatttttcaccacaagcagaatacaacatcaaatcaaaataagaaggtttaacttggaggatgtggatcgtaaagaccatctctaattaaaggaaaagaaacgcaggattcaggataggaacttatatttcagaactaacaaataattactatccaaagaagaaatgttcagtacttgtgctggcagtgctgctatatagctaagcttcaaacataaagggctttagaacgacaatcataccttgtagaagatttgagaatgaccaatattaacaattcaaatcggtgaagggaaactttctttttccttttctcggagatcccaaattgctgcagtggtgtcaataatccaggcgtggcaggaaggatcaaatattctatcttgttactagggaagttttggacgacatacacaacacaaagaaaagagtgcctaaatggcagagtgctatatagtggctttagtggggagaaaaaaaatgatagcaattgtctgttaattaagccttctaattgtctgataattaagtttcatgcatatggcctcttagcttcttggatttatggacatattctgccgttttagaacaacgtagtaatggcgccagctacatacatgaacagtgggggatagatagcaactttgctcgtgcaaatgaatggcgtttaattgtaatccaacgactgtagctaaatgtaatgacgtggctaactcacaatgcagagaaatagtaaataatgatggtagtgggaatgaactatataagatatatagctagggaagttttggacgacatacacaacacaaagaaaagagtgcctaaatggcagagtgctatatagtggctttagtggggagaaaaaaaaagataataattgtctgttaattaagccttctaattgtctgataattaagtttcatgcatatggcctcttagcttcttggatttatggacatattctgccgttttagaacaacgtagtaatggcgccagctacatacatgaacagtgggggatagatggcaactttgctcgtgcaaatgaatggcgtttaattgtaatccaacgactgtagctaaatgtaatgacgtggctaactcatagtgcagagaaatagtaattaatgatgttagtggggatgaactatacaagatatatagatatagataatagtgtacatccattaatctatctatagctagctagcctccaaaagaaactctcccgttaaccacaaaaaagatatggtcattgatcatcatcagatgttgatgatgacaaatattgtaaactgcatgaagactctatcgtgttaatgcggaaaattaagttacactatgtataaataagatgtaatatgtttaatagaacaaaaaatgcttcctgtgttttatatagtttgcatatggttgcatatatagtgcgaggtgaatatattttatgtttaattgatactaatgaattttgacctaaaaatcattaagattgtatggttttacgagagaaggaagaagagacgatttaaaccatatgagttggctttcaaaatctatacttcttcaaaaaagtagtagtagttgtatgtggtggtgagtgatgaatctgccaccacccaaaccaccacctccctattattttagaataaagaaatgacatgtggggctagaagacccacatgacaaccaccaactctctacttatgggaatggaaaaatgatagtgtgaggtcaaaaattcacatgtcggtagaaattaaaagataatgtatataaaaataatggtaataactggttaatgatatttttttattaattagaacccctttgccacacgtggataatacgctagtaatagaaattcaacgaggccagtgatttgccacttagacccgtctgtctaagagtttgctaataggagggcgcccttatggacatgcgtgtagtgtatgtgcatagtcatggagtgcatactctggttacaaaaaaaaataaacattaataatatgtactctctccgtttcaaaatataactacttttagcctccaggatttgttccaaaatataacaacttctctatcaacattctcttcccaaccaatcacaaccattcactattcacttttatcactcacctccactactcatccaatcacaactttccaccattcacttctacttactttcttaataattgtgtcaaactttaaaacttcttatattctaggacggagggattacaaggcgcgagttgagctaattgggcacttaagaaagttcttgcgctacaaagatgattaagaataccatgttatcataaccacgaattgtatcaagaatttgtgttaaataaatcgtaccattagataatttggtacaatgaattcatatattcccttcagttataaatatttaggccctgtttagttccaaaaacttttttccagaaacatcacgtcaaatctttggacacatgcatgaaatattaaatatagataaattaaaaaaactaattgcacagttaggaggaaatcgcgagacgaatattttaagcctaattagtccatgattagccataagtgctacagtaacccacatgtggtaatgacggattaatttggctcaaaagattcgtctcgcagtttctaggcgagttatgaaattagttttttcatttgtgtccgaaaaccccttccgacatccggtcaaacgtccgatgtaacatccaaaaattttcttttcgtgaattaaacaggccctaacgtttagggcaagtgggtaacttgaccatcatgtacaagacaagtttttcatacggttccacttccaaagtcgcaacatcactgaatttcctgccaagactccatttgaaagatgggcttgaagaacgaaggtgaagggaacagcctatatgagggtccaactactaaaccccacaaagagaaacatcccaggcccacttccactcccaccggcccgtgattggtacgtactccactttcgacgatatcaaatcatcaaatccctggacaaatttaccgatgtcgcacatcacgtcactatatgtcaggcacgcagcctaatgctgcagaaaggcccgggtttgcgctgacagtgacatgataaaattatattgaaccatgactgtgtttagttcagcgcaaagtttgtttgaaattgaagatgatgtgactgaatatttgtgtgtatgacagattgatatgatgaaaaaggattgaagtttgaatcgaaactttggatctaaacacagcccacatatatatatatatgtatatagcttgtgcgatttcgttgccaactgttttaatttgttgttagtattacacaactatacgttactcaaaagctcctaagtactcttctgcaggatcaacggcggtcaagaacgaggaagacgccgacgagctcccagtgtgcgagctccccgcatcgtcggcgtctccgccgaggcacgtgcccgagggggctctggacgccgacggcggcgcggcgaggcgtggcgcggcgaagacgcggagcctccaggacgacctggccctcgccagcatcccgccgtccatccggcgctacaaggggtacgtgtcccgccgccgcgccgtcgccaccgccgagcggcagcgcgccacggagatcgcccacgcgttccggtccccgctcccctactgcgtcatccgcatgagcaccatgcacgtctactactccttcatgatggtgcgcgaacaactctactcgatcgatcgtatgtacacacacaacacctgaatcgtgtgacagcctgatgagcagattttgtgtgtgtgtgtgtgttaatatgcagaggtttccgacggggttctcgaggcagcacctgccgcgggagaggacggacgtggtgctgcgagacccgggggggaaggtgtggtcggtgctgtacatcccgaacacgcgggaccggctgtcgcgcgggtggtgcgcgttcgcgcgcgggaactgcctcgaggaaggcgactactgcgtgttcgagctcgtcgccgcggccgagttccgggtccacatcttccgggtggtcgagccggccgtgccagcggtcaggctccggagagtcaccgtcacctgtggccgcggccccacgtagttggggaagaaaaacagagcaatttggattggcaagccctatgaatgaaacttaataattcaggattcagaacagggcaaaataagctggatcgctgtcttcggta
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| CDS seq | atgccgggggcgggagggaagaagtcgccgtgggcgtcgggggagaggcggccgcacttcttcaaggtgctcgtcggcgacttcaagcagcgcctgaaaatcccgccaaacttctgcaagcacatcccctgggaggagtcgaggaaggccaagggcctgaaggaggcgtccatggcggccaccctggaggggcccagcggccggacgtggctggtcgtcatccgccggacggccgagggcaccttcttcacctccggctggcccaagttcgtgcaggaccaggcgctgcgcgaactcgagttcgtcgtgttccgctacgacggcaacacgcgcttcaccgcgatggtgttcgacaggacggcgtgcgagcgggaggacctgatgggaggcggcggcggcgaccggccgcgcaagaaacggggtcgccctaggacggccgccgcctcgcgtgatgccgcgcggcccaagaaggattcggttgggaaggagatggtgacgtaccgcgcgtcgcctagtggatcaacggcggtcaagaacgaggaagacgccgacgagctcccagtgtgcgagctccccgcatcgtcggcgtctccgccgaggcacgtgcccgagggggctctggacgccgacggcggcgcggcgaggcgtggcgcggcgaagacgcggagcctccaggacgacctggccctcgccagcatcccgccgtccatccggcgctacaaggggtacgtgtcccgccgccgcgccgtcgccaccgccgagcggcagcgcgccacggagatcgcccacgcgttccggtccccgctcccctactgcgtcatccgcatgagcaccatgcacgtctactactccttcatgatgaggtttccgacggggttctcgaggcagcacctgccgcgggagaggacggacgtggtgctgcgagacccgggggggaaggtgtggtcggtgctgtacatcccgaacacgcgggaccggctgtcgcgcgggtggtgcgcgttcgcgcgcgggaactgcctcgaggaaggcgactactgcgtgttcgagctcgtcgccgcggccgagttccgggtccacatcttccgggtggtcgagccggccgtgccagcggtcaggctccggagagtcaccgtcacctgtggccgcggccccacgtag
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| Protein seq | MPGAGGKKSPWASGERRPHFFKVLVGDFKQRLKIPPNFCKHIPWEESRKAKGLKEASMAATLEGPSGRTWLVVIRRTAEGTFFTSGWPKFVQDQALRELEFVVFRYDGNTRFTAMVFDRTACEREDLMGGGGGDRPRKKRGRPRTAAASRDAARPKKDSVGKEMVTYRASPSGSTAVKNEEDADELPVCELPASSASPPRHVPEGALDADGGAARRGAAKTRSLQDDLALASIPPSIRRYKGYVSRRRAVATAERQRATEIAHAFRSPLPYCVIRMSTMHVYYSFMMRFPTGFSRQHLPRERTDVVLRDPGGKVWSVLYIPNTRDRLSRGWCAFARGNCLEEGDYCVFELVAAAEFRVHIFRVVEPAVPAVRLRRVTVTCGRGPT |
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| Function | B3 domain-containing protein Os01g0723500 [UniProtKB/Swiss-Prot:Q8S2E6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0030870 | OsLima_01g0030870.01 | Chr01 | 31623607 | 31629575 | + | NAM | ||
| CDS seq | atgccgggggcgggagggaagaagtcgccgtgggcgtcgggggagaggcggccgcacttcttcaaggtgctcgtcggcgacttcaagcagcgcctgaaaatcccgccaaacttctgcaagcacatcccctgggaggagtcgaggaaggccaagggcctgaaggaggcgtccatggcggccaccctggaggggcccagcggccggacgtggctggtcgtcatccgccggacggccgagggcaccttcttcacctccggctggcccaagttcgtgcaggaccaggcgctgcgcgaactcgagttcgtcgtgttccgctacgacggcaacacgcgcttcaccgcgatggtgttcgacaggacggcgtgcgagcgggaggacctgatgggaggcggcggcggcgaccggccgcgcaagaaacggggtcgccctaggacggccgccgcctcgcgtgatgccgcgcggcccaagaaggattcggttgggaaggagatggtgacgtaccgcgcgtcgcctagtggatcaacggcggtcaagaacgaggaagacgccgacgagctcccagtgtgcgagctccccgcatcgtcggcgtctccgccgaggcacgtgcccgagggggctctggacgccgacggcggcgcggcgaggcgtggcgcggcgaagacgcggagcctccaggacgacctggccctcgccagcatcccgccgtccatccggcgctacaaggggtacgtgtcccgccgccgcgccgtcgccaccgccgagcggcagcgcgccacggagatcgcccacgcgttccggtccccgctcccctactgcgtcatccgcatgagcaccatgcacgtctactactccttcatgatgaggtttccgacggggttctcgaggcagcacctgccgcgggagaggacggacgtggtgctgcgagacccgggggggaaggtgtggtcggtgctgtacatcccgaacacgcgggaccggctgtcgcgcgggtggtgcgcgttcgcgcgcgggaactgcctcgaggaaggcgactactgcgtgttcgagctcgtcgccgcggccgagttccgggtccacatcttccgggtggtcgagccggccgtgccagcggtcaggctccggagagtcaccgtcacctgtggccgcggccccacgtag
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| Protein seq | MPGAGGKKSPWASGERRPHFFKVLVGDFKQRLKIPPNFCKHIPWEESRKAKGLKEASMAATLEGPSGRTWLVVIRRTAEGTFFTSGWPKFVQDQALRELEFVVFRYDGNTRFTAMVFDRTACEREDLMGGGGGDRPRKKRGRPRTAAASRDAARPKKDSVGKEMVTYRASPSGSTAVKNEEDADELPVCELPASSASPPRHVPEGALDADGGAARRGAAKTRSLQDDLALASIPPSIRRYKGYVSRRRAVATAERQRATEIAHAFRSPLPYCVIRMSTMHVYYSFMMRFPTGFSRQHLPRERTDVVLRDPGGKVWSVLYIPNTRDRLSRGWCAFARGNCLEEGDYCVFELVAAAEFRVHIFRVVEPAVPAVRLRRVTVTCGRGPT
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0723500 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g52514 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0723500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0032040 | RBH | 0.0 | 3.099371 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0031560 | RBH | 0.0 | 0.000000 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0032010 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0031220 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0030900 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0500900 | RBH | 0.615732 | 1.605217 | 0.1001585 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0030630 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0493300 | RBH | 1.007312 | 0.270984 | 0.17845 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0030890 | RBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0030900 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0031100 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0031290 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0031050 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G031500 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0031150 | RBH | 0.0 | 0.000000 | 0.0 |
