Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_Ung0021310 | OGI:11057480 | 7/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | ChrUN-Ctg170:38983-40053 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGAGGGTCATCTCCATATCATTTTGCATTTCTCGACAAATATAATCTGTTTGGCTATTCTAAGTGGTTCTTTTTTTCTGGGTAAAGAGGAACTTGTTATTTTGAATTCTTGGGTTCAGGAATTCTTCTATAACTTAAATGACTCAGTAAAAGCTTTTTTTATTCTTTTAGTTACTGATTTTTTTGTTGGATTTCACTCCACCCGCGGTTGGGAACTACTAATTCGTTGGGTCTATAACGATCTTGGATGGGTTCCTAACGAGCTAATTTTCACTATTTTTGTTTGTAGTTTTCCTGTGATTCTAGATACATGTTTGAAATTTTGGGTCTTTTTTTGTTTAAACCGCCTATCTCCTTCGCTTGTAGTCATTTATCATTCAATTAGTGAAGCATAAACTCATTTGATCTCCTGATATTAATCAAAATTAGCATCCTTTTTCCTTTAGAAAGAAAGCCTTTTTCCATTTTAGCAAAATTCTTTTTTTCTATTTCTACCTGCTCAAGGTATTCATCATTCCAGTACAACTGTTGCAGTAGAATGACAACAGATTCGTGTATAGGGAACTAGATTAGCTTAGCTACCTATCTAATTTATTGTAGAAATTCCGGGATCTGTGATTGGACATGGAAAATAGAAATACTTTTTCTTGGGTAAAGGAACAGATGACTCGATCGATTTCTGTATCGATCATGATATACGTAATAACTCGGACATCTATTTCAAATGCATATCCCATTTTTGCGCAGCAAGGTTATGAAAACCCACGAGAAGCAACTGGACGAATTGTATGTGCCAATTGCCATTTAGCGAATAAGCCTGTGGATATTGAAGTTCCCCAAGCAGTGCTTCCCGATACTGTATTTGAAGCAGTTCTTCGAATTCCTTATGATATGCAACTGAAACAAGTTCTTGCTAATGGGAAAAAGGGAGGGTTGAATGTGGGTGCTGTTCTTATTTTGCCCGAGGGATTCGAATTAGCGCCGCCCGACCGTATTTCTCCTGAGTTGAAAGAAAAGATAGGAAATCTCTCTTTTCAGAGTTATCGTCCCAATAAAAAAATATTCTTGTGA
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| CDS seq | ATGAGGCAAGGTTATGAAAACCCACGAGAAGCAACTGGACGAATTGTATGTGCCAATTGCCATTTAGCGAATAAGCCTGTGGATATTGAAGTTCCCCAAGCAGTGCTTCCCGATACTGTATTTGAAGCAGTTCTTCGAATTCCTTATGATATGCAACTGAAACAAGTTCTTGCTAATGGGAAAAAGGGAGGGTTGAATGTGGGTGCTGTTCTTATTTTGCCCGAGGGATTCGAATTAGCGCCGCCCGACCGTATTTCTCCTGAGTTGAAAGAAAAGATAGGAAATCTCTCTTTTCAGAGTTATCGTCCCAATAAAAAAATATTCTTGTGA |
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| Protein seq | MRQGYENPREATGRIVCANCHLANKPVDIEVPQAVLPDTVFEAVLRIPYDMQLKQVLANGKKGGLNVGAVLILPEGFELAPPDRISPELKEKIGNLSFQSYRPNKKIFL |
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| Function | Cytochrome f [UniProtKB/Swiss-Prot:P0C389] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_Ung0021310 | OsLiXu_Ung0021310.01 | ChrUN-Ctg170 | 38983 | 40053 | + | NAM | ||
| CDS seq | ATGAGGCAAGGTTATGAAAACCCACGAGAAGCAACTGGACGAATTGTATGTGCCAATTGCCATTTAGCGAATAAGCCTGTGGATATTGAAGTTCCCCAAGCAGTGCTTCCCGATACTGTATTTGAAGCAGTTCTTCGAATTCCTTATGATATGCAACTGAAACAAGTTCTTGCTAATGGGAAAAAGGGAGGGTTGAATGTGGGTGCTGTTCTTATTTTGCCCGAGGGATTCGAATTAGCGCCGCCCGACCGTATTTCTCCTGAGTTGAAAGAAAAGATAGGAAATCTCTCTTTTCAGAGTTATCGTCCCAATAAAAAAATATTCTTGTGA
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| Protein seq | MRQGYENPREATGRIVCANCHLANKPVDIEVPQAVLPDTVFEAVLRIPYDMQLKQVLANGKKGGLNVGAVLILPEGFELAPPDRISPELKEKIGNLSFQSYRPNKKIFL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.0 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g21290 | RBH | 92.993591 | 84.670120 | 21.074438 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0015510 | SBH | 87.976479 | 35.859432 | 142.920792 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0020580 | SBH | 10.737679 | 0.555120 | 14.576605 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0007620 | SBH | 87.087700 | 10.932062 | 91.044647 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0015400 | SBH | 28.082493 | 0.732079 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0020190 | SBH | 1915.102539 | 132.159256 | 1512.630249 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0347400 | SBH | 2614.951172 | 277.126984 | 260.906357 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0020140 | SBH | 126.792618 | 4.171010 | 60.184303 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0342600 | SBH | 1588.097168 | 116.3419 | 142.560745 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0020150 | SBH | 44.064213 | 0.873456 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0020060 | SBH | 148.625443 | 36.743984 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0020310 | SBH | 1476.451904 | 104.557892 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0019820 | SBH | 235.040909 | 0.0 | 121.790993 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0020100 | SBH | 263.378326 | 42.602730 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G021050 | SBH | 98.717003 | 13.849771 | 124.464493 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0020780 | SBH | 479.683258 | 191.294098 | 783.891907 |
