Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_09g0019140 | OGI:09064550 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr09:23034814-23038232 | ||||||||
| Gene Symbol | OsPSY, PSY, OsPSY3, PSY3 | ||||||||||
| DNA seq | gctgagctcatgctaatgatccttcataaaaggtgacacctgtacaccaatgttttataaaaaaaaacgttgctgtttttgactaatagattggaaatctttgtgggggtacatacccatcttacacccatgctgataagactaatatttcatatagatagttaggtactttcacaacctagctgattgactgaagcaatgagtgataagctgacagcattatgcaagagtagtatgacctatgaaatatggtcatatatacactactctgtttcatagaaacttccctatatatacacaatgttaaagtgtacatatatttgcagatactgcaatactttgtacattgcaagacttgaatacaagataaattgtaacaacaataccacaagctgatcatgatgatgttaggctagagcagtgcctcactgaagaggggagcatgagtgatctgtagtaagctttaggcagagccacaatcttctttgcctttgggacgtaggccctcttggtgaagttgttgtaaccgttggcctcgatctcgtcaaggatttgtcggtacagaagtagagaagcccaaacctgcaacgacaacctaatggtcattcatacgtgtgaaccaacttaacataattaagaatgttcagatggaaattttaaaggatatgtagttgtcatttctcaccggccatcggctctcctgattgagctcgctggcgccttcttcggcctgtctgaaaaacgccctcgctctcgtgatctgatccctcataaaacatctccatctgtccgtgacgcggccgtcgaagatgtcatcttcagagagtccggccatctcgagctcgtccattgggagatagatcctgcctcttcttgcactgcaaattaacaagcatatatcaggacccattagagatggctgtaactaatcaagaaataatcgcatagatgatgatctctgaagcttagcttactcctcgccgacgtccctgagaatgttggtgagctggttggcgaggccgagagccagtgcccccttgtagacggtctcggtgttggccctcgagtccggcgagatgcccatgaccggcaccgtcatgagcccgaccgttccggcgacgtagtagcagtagaggtagagctcgtcgaagctcctgtacctcgacttcgttaggtccaatcgcatcccctcgatcatgtccctgaacggctgtacacacggagctatatgaacacgccattttttcttatacttatcagccaaaatttaaattttcaacattaaatttatagctaattttaagatttttcatcgaagtttatttttcagtctttatttttaattttagatcaccaagaacacatgtataaaagttttattcataaattatttttcgtttgctaatatgccgtttggcttattcgacgaataagtgaaacgatggggcgccatgtttgatttcaagccaagaacagccacggacttcatggtgtttgtaattaatctttagataatgaaaattggacttagctaattaattacataataataaagctgatataaccgtactgagaatactcttggcttttcatggtgtttgttgtgcttgcctggatgtcgacggggaaggtggcgacggtgtgggagagggcggcgtcgagcatgtcgtaggggcggccggcgaagatgtcgtccagccgcgactcccaccggtcgagagccagcgccgacatgtgcgacgcgttgggcccatccaccagctcgtccgttcgcctgcaccacactgatcgatcaaccaacaaccaatcaatcgtcagccacatcgttgaatggcatcaatatggaagttggaagctattatcttttatacgtagtaccgtatatcgcccagattgccctcctcctctccggcgtcatcagctgcgtcgctgcagcagacacacaattcatcaaataaattgtttcagaaacttaattagtgtagtaacacatgtgccaggagccattaataagttaattgtagtatcacggagctatcgtttctcggaataagcaaaacggccgtgaataagcgaaacgacgtatttacaaacgaaaataatttgtgaataaaatttttatatacgttttcttaacgatttaaaaacaaatgctgaaaaataaactttgataaagaaaaccttaaaatcagctttaaatttaaggttaaaaatttgctttaaatttaagtttaaaaatttaaaatttagctgataagtataaacataagaaaaggtgagtcctgtgttaccgctcgtcagttctactgttgcgtctgacagcgtagcgtggaacggtcctgctgttgcagctgagctcgtttttactactctctgtctgactcattatcacttagacaatcacccatgatcatatcgtgctctatactcgtttggaattttttagttagggtgtgtttagctcacgttaaattagaagtttgattaaaattaaaatgatgtgatggaaaagttaaaattttatgtgggtagaaaaatttagatgtgatgtaaatgttaaaagagtttaaagaaaaaatttagaactaaactcggccttattttctacttaacacgctcttttactcttgctgttttgactgtgatcaaatcggatcgatagaggcacagaggatggtagaaatttttttttaccgaggtagaatgtcttggcgtactccttgcagacctcgccgcagcgatcgaaggcggcgttcaggccgccggcgacgcgctccctctcggccaactgcgccggcctccgcatctcgggcgctgccgcggcgagcgccgcttgcttcagaacgacgtcgtgcaccctctgctcggacggcacggcggcggcagcggcggcgagcgcgtcgtcgtcgtcctccgccgccggcgccgcgacatgcagatggcccggcagcggcggcagcgcgggcggcgcggcgccgctccacggctctgctacctcgaggcagccaatgggattggagcccgcggcgcgcacggagcacggcggcggcggcggcggcgccatcttcgcgtactcgaccctggccaacgacgtcgcccggcgcctcggcacgtcgacgaacacgcgttgccgccgacgagcgcacaccggcgaccccgccgcgctgctggtggtggtggtggacatcatggccgacgacgacgtacttggccgctggtttcttcttcttcttcttcttcttcagctagctgcaggagttagctcacagtctcacaaagctcgttgctccctggcggccgttttgtaatgtggaggcgagaggacacgtggcagtcttacacctgcagctcttcgcggcagcaggaacaacgcgattgctggctcattggctgggcatgcaggtgaagtgaaccttatc
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| CDS seq | atgatgtccaccaccaccaccagcagcgcggcggggtcgccggtgtgcgctcgtcggcggcaacgcgtgttcgtcgacgtgccgaggcgccgggcgacgtcgttggccagggtcgagtacgcgaagatggcgccgccgccgccgccgccgtgctccgtgcgcgccgcgggctccaatcccattggctgcctcgaggtagcagagccgtggagcggcgccgcgccgcccgcgctgccgccgctgccgggccatctgcatgtcgcggcgccggcggcggaggacgacgacgacgcgctcgccgccgctgccgccgccgtgccgtccgagcagagggtgcacgacgtcgttctgaagcaagcggcgctcgccgcggcagcgcccgagatgcggaggccggcgcagttggccgagagggagcgcgtcgccggcggcctgaacgccgccttcgatcgctgcggcgaggtctgcaaggagtacgccaagacattctacctcgcgacgcagctgatgacgccggagaggaggagggcaatctgggcgatatacgtgtggtgcaggcgaacggacgagctggtggatgggcccaacgcgtcgcacatgtcggcgctggctctcgaccggtgggagtcgcggctggacgacatcttcgccggccgcccctacgacatgctcgacgccgccctctcccacaccgtcgccaccttccccgtcgacatccaggcaagcacaacaaacaccatgaaaagccaagagagcttcgacgagctctacctctactgctactacgtcgccggaacggtcgggctcatgacggtgccggtcatgggcatctcgccggactcgagggccaacaccgagaccgtctacaagggggcactggctctcggcctcgccaaccagctcaccaacattctcagggacgtcggcgaggatgcaagaagaggcaggatctatctcccaatggacgagctcgagatggccggactctctgaagatgacatcttcgacggccgcgtcacggacagatggagatgttttatgagggatcagatcacgagagcgagggcgtttttcagacaggccgaagaaggcgccagcgagctcaatcaggagagccgatggccggtttgggcttctctacttctgtaccgacaaatccttgacgagatcgaggccaacggttacaacaacttcaccaagagggcctacgtcccaaaggcaaagaagattgtggctctgcctaaagcttactacagatcactcatgctcccctcttcagtgaggcactgctctagcctaacatcatcatga
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| Protein seq | MMSTTTTSSAAGSPVCARRRQRVFVDVPRRRATSLARVEYAKMAPPPPPPCSVRAAGSNPIGCLEVAEPWSGAAPPALPPLPGHLHVAAPAAEDDDDALAAAAAAVPSEQRVHDVVLKQAALAAAAPEMRRPAQLAERERVAGGLNAAFDRCGEVCKEYAKTFYLATQLMTPERRRAIWAIYVWCRRTDELVDGPNASHMSALALDRWESRLDDIFAGRPYDMLDAALSHTVATFPVDIQASTTNTMKSQESFDELYLYCYYVAGTVGLMTVPVMGISPDSRANTETVYKGALALGLANQLTNILRDVGEDARRGRIYLPMDELEMAGLSEDDIFDGRVTDRWRCFMRDQITRARAFFRQAEEGASELNQESRWPVWASLLLYRQILDEIEANGYNNFTKRAYVPKAKKIVALPKAYYRSLMLPSSVRHCSSLTSS |
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| Function | Phytoene synthase 3, chloroplastic [UniProtKB/Swiss-Prot:B6UV92] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_09g0019140 | OsLiXu_09g0019140.01 | Chr09 | 23034814 | 23038232 | - | NAM | ||
| CDS seq | atgatgtccaccaccaccaccagcagcgcggcggggtcgccggtgtgcgctcgtcggcggcaacgcgtgttcgtcgacgtgccgaggcgccgggcgacgtcgttggccagggtcgagtacgcgaagatggcgccgccgccgccgccgccgtgctccgtgcgcgccgcgggctccaatcccattggctgcctcgaggtagcagagccgtggagcggcgccgcgccgcccgcgctgccgccgctgccgggccatctgcatgtcgcggcgccggcggcggaggacgacgacgacgcgctcgccgccgctgccgccgccgtgccgtccgagcagagggtgcacgacgtcgttctgaagcaagcggcgctcgccgcggcagcgcccgagatgcggaggccggcgcagttggccgagagggagcgcgtcgccggcggcctgaacgccgccttcgatcgctgcggcgaggtctgcaaggagtacgccaagacattctacctcgcgacgcagctgatgacgccggagaggaggagggcaatctgggcgatatacgtgtggtgcaggcgaacggacgagctggtggatgggcccaacgcgtcgcacatgtcggcgctggctctcgaccggtgggagtcgcggctggacgacatcttcgccggccgcccctacgacatgctcgacgccgccctctcccacaccgtcgccaccttccccgtcgacatccaggcaagcacaacaaacaccatgaaaagccaagagagcttcgacgagctctacctctactgctactacgtcgccggaacggtcgggctcatgacggtgccggtcatgggcatctcgccggactcgagggccaacaccgagaccgtctacaagggggcactggctctcggcctcgccaaccagctcaccaacattctcagggacgtcggcgaggatgcaagaagaggcaggatctatctcccaatggacgagctcgagatggccggactctctgaagatgacatcttcgacggccgcgtcacggacagatggagatgttttatgagggatcagatcacgagagcgagggcgtttttcagacaggccgaagaaggcgccagcgagctcaatcaggagagccgatggccggtttgggcttctctacttctgtaccgacaaatccttgacgagatcgaggccaacggttacaacaacttcaccaagagggcctacgtcccaaaggcaaagaagattgtggctctgcctaaagcttactacagatcactcatgctcccctcttcagtgaggcactgctctagcctaacatcatcatga
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| Protein seq | MMSTTTTSSAAGSPVCARRRQRVFVDVPRRRATSLARVEYAKMAPPPPPPCSVRAAGSNPIGCLEVAEPWSGAAPPALPPLPGHLHVAAPAAEDDDDALAAAAAAVPSEQRVHDVVLKQAALAAAAPEMRRPAQLAERERVAGGLNAAFDRCGEVCKEYAKTFYLATQLMTPERRRAIWAIYVWCRRTDELVDGPNASHMSALALDRWESRLDDIFAGRPYDMLDAALSHTVATFPVDIQASTTNTMKSQESFDELYLYCYYVAGTVGLMTVPVMGISPDSRANTETVYKGALALGLANQLTNILRDVGEDARRGRIYLPMDELEMAGLSEDDIFDGRVTDRWRCFMRDQITRARAFFRQAEEGASELNQESRWPVWASLLLYRQILDEIEANGYNNFTKRAYVPKAKKIVALPKAYYRSLMLPSSVRHCSSLTSS
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_09g0019140 | OsLiXu_09g0019140.02 | Chr09 | 23035037 | 23038085 | - | IsoSeq | ||
| CDS seq | atgggcccaacgcgtcgcacatgtcggcgctggctctcgaccggtgggagtcgcggctggacgacatcttcgccggccgcccctacgacatgctcgacgccgccctctcccacaccgtcgccaccttccccgtcgacatccagccgttcaggg |
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| Protein seq | MGPTRRTCRRWLSTGGSRGWTTSSPAAPTTCSTPPSPTPSPPSPSTSSRSG |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.653726 | 0.0 | 1.647195 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0555500 | RBH | 0.164407 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g38320 | RBH | 0.084193 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0555500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0019240 | RBH | 0.285308 | 2.388752 | 2.974530 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0019330 | RBH | 0.560038 | 0.000000 | 1.473977 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0019530 | RBH | 0.308028 | 0.0 | 2.738202 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0019300 | RBH | 0.000000 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0019520 | RBH | 20.502178 | 6.473023 | 13.625026 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0373000 | RBH | 3.010754 | 10.9155455 | 59.385065 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0019300 | RBH | 0.116995 | 0.0 | 0.850011 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0359300 | RBH | 7.280823 | 3.5555945 | 10.7867735 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0019420 | RBH | 0.137763 | 0.114788 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0019150 | RBH | 2.293187 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0019120 | RBH | 4.392042 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0019290 | RBH | 0.121969 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G019680 | RBH | 0.513660 | 0.000000 | 0.856620 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0019510 | RBH | 0.114286 | 9.202650 | 4.474011 |
