Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_06g0020890 | OGI:06023520 | 9/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr06:23863737-23864876 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgaccgctttaccaatagttgagactcaatctggagacgtttccgcctatattcctactaatgtaatctccattacagatgggcaaatattcttatccgcagatctattcaatgccggaattcgacctgctattaatgtgggtatttctgtttccagagtaggatccgcggctcaaattaaagccatgaaacaagtagctggcaaatctaaattggaattagctcaattcgcagagttacaagcctttgcacaattcgcctctgctctcgataaaacaagtcagaatcaattggcaaggggtcgacgattacgagaattgcttaaacaatcccaatcaaaccctctcccagtggaagagcagatagctactatttataccggaacgagaggatatcttgattccttagaaattggacaggtaaagaaatttctggatgagttatgtaaacacctaaaagataccaaacctcaattccaagaaattctatcttctagcaagacattcaccgaggaagcggaaatccttttgaaggaagctattcaggaacagctcgaacggttttcccttcaggaacaaacaacaattttgcatgtctactcttgttagtagaggagaaatcgttgagaaagatttttcatttgaatcatgcaaaaaagttttcttagtttttagtatagttatttaaagaatagatagaaataagattgcgtccaataggatttgaacctataccaaaggtttagaagacctctgtcctatccattagacaatggacgcttttctttcgtattttcttctttcattttgtaaacaacctggtagcgaagctgcagcttgataattcataggggccatggtgtcaaaaccgggttacctaactagggaaaaactgttccgaagctcttccaaagcgtggcaggctgagcagcttttaccgaagcggaccccccgcccatagcaaatgtttgttgtcatatttcaatctagggggctgcggcacaacctgggtgtggagacatgaatgagtcgaaccctattcatcatgacgtaatgtcaaagaagtggctcggcgaggggctttatgctgattcaaggccgaaggacaaagctcttcctcttcgtgcttgtcctaaataa
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| CDS seq | atgaccgctttaccaatagttgagactcaatctggagacgtttccgcctatattcctactaatgtaatctccattacagatgggcaaatattcttatccgcagatctattcaatgccggaattcgacctgctattaatgtgggtatttctgtttccagagtaggatccgcggctcaaattaaagccatgaaacaagtagctggcaaatctaaattggaattagctcaattcgcagagttacaagcctttgcacaattcgcctctgctctcgataaaacaagtcagaatcaattggcaaggggtcgacgattacgagaattgcttaaacaatcccaatcaaaccctctcccagtggaagagcagatagctactatttataccggaacgagaggatatcttgattccttagaaattggacagggggctgcggcacaacctgggtgtggagacatgaatgagtcgaaccctattcatcatgacgtaatgtcaaagaagtggctcggcgaggggctttatgctgattcaaggccgaaggacaaagctcttcctcttcgtgcttgtcctaaataa
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| Protein seq | MTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKSKLELAQFAELQAFAQFASALDKTSQNQLARGRRLRELLKQSQSNPLPVEEQIATIYTGTRGYLDSLEIGQGAAAQPGCGDMNESNPIHHDVMSKKWLGEGLYADSRPKDKALPLRACPK |
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| Function | ATP synthase subunit alpha, chloroplastic [UniProtKB/Swiss-Prot:P05022] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_06g0020890 | OsLiXu_06g0020890.01 | Chr06 | 23863737 | 23864876 | + | NAM | ||
| CDS seq | atgaccgctttaccaatagttgagactcaatctggagacgtttccgcctatattcctactaatgtaatctccattacagatgggcaaatattcttatccgcagatctattcaatgccggaattcgacctgctattaatgtgggtatttctgtttccagagtaggatccgcggctcaaattaaagccatgaaacaagtagctggcaaatctaaattggaattagctcaattcgcagagttacaagcctttgcacaattcgcctctgctctcgataaaacaagtcagaatcaattggcaaggggtcgacgattacgagaattgcttaaacaatcccaatcaaaccctctcccagtggaagagcagatagctactatttataccggaacgagaggatatcttgattccttagaaattggacagggggctgcggcacaacctgggtgtggagacatgaatgagtcgaaccctattcatcatgacgtaatgtcaaagaagtggctcggcgaggggctttatgctgattcaaggccgaaggacaaagctcttcctcttcgtgcttgtcctaaataa
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| Protein seq | MTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKSKLELAQFAELQAFAQFASALDKTSQNQLARGRRLRELLKQSQSNPLPVEEQIATIYTGTRGYLDSLEIGQGAAAQPGCGDMNESNPIHHDVMSKKWLGEGLYADSRPKDKALPLRACPK |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.571780 | 6.370550 | 4.618163 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0008360 | RBH | 682.535339 | 4605.614258 | 3856.805176 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G036910 | SBH | 24.298254 | 10.598877 | 29.336964 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
