Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_03g0016770 | OGI:03033490 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr03:12991458-12997774 | ||||||||
| Gene Symbol | OsWD40-70 | ||||||||||
| DNA seq | gaagcgccgtcacagcggctgcttccccctctctcttccgcctcggcgagcagcgacaccaccggagcagggcggccggcggcgacgggcggggcccgacggggaggaggtaggcgggcttggatctgcagggctcacgcggcgtaagagcaggggaagccgtatctccggcggcgttcatcggtgagaggcgacaaaccctaagcatctagtaccatctaggtcgagctttagctgaaatctgtcgtgtgtgcgtgcgttttgttcatcggaattcatggcgatggctgcctgactgctggttttttttcttctcactccctccacagcagcaggaagtcgtcatggcgacggcggagccggtggagccgcagtcgctgaagaagctgagcctcaagtcgctcaagcgctcgcacgacctcttcgcgcccacccactccctcctcttcactcccgatccggagaggtaaatcctgcgcgctcccctctctgcccccatcgttcaccctagaaccctaacggcgctgtttgctaaactgtttcccccctttggtttggttgttgtggcggacggcagtaagcaggttcgtgtcggctgcaaggtctgttcgcacgtctctgttctctacttgttaagattccgtcctttatttgcttggttgatgaagccccgaaaataattgatggcgttgtcggatctttcaggtgaatgcagagtacagcgcggtgaagaacctaccaacagatcagggccgaggacaggtcaagagtgctgcggcaccttcaactgcattggcgcttccaggtaaaatatggtgcccttttattttgtataattgcatcttttgttttccataggtaaaatctcatggtattcttgaacaattacagtattacgcaaatgcacattgatgtagattgtttgtgctgcaaaaatcgagacacctgacacaagcatagcaagcttccgtttaaaactgattttacttttacattgagctcacaaatatcttttcaggaacacaagatgtcaaagatgctgataacaaaggcagcagtactgctattgttcctgcaccacatatgctccccaaagcaccgtaagtccattcatagttcgcttgcctgtaactattttactcttttcttaattgtaggcactgagaacttcctttttttgattttttagggattcaacgataccaggcaagaatacaactataacaattcctggttcatctgacaggtttgttcacttatctttgctttaatcgttgatatgcagctcaaacacttgatgttgccccaatgtggctaatccaaaaacagaaatgccttcaattgaaactttgaactagctcgtggcgtttccccttagccctttatgaacaccacctttgagtggctctagtgcttaggtgaattaggatatgggtgggtcttggtgctcaggaatgggtatcagctaacctttttcgtctttagaatgtgggcagccttgataacttgaagtagtagttgttaaagaaaatgttgttccactgagttgcaataccatcattgtgtataggtgcttcttaggctcctaatggcatgtgtgttttgatgccaagaagagaggctaagaaatttagcctccctaacctggaactagtaaactggagggagagaggctaagccactcaatagattattaattgctttaagtcgatgatggggtctaacaggatcaccagtgtggctacgcattgcaagaatttagactctagctcctgttagatgtggcagtgaggtggaaaaccaaactcctctcatgctagaaacactagcaagcgtatatattccatcctttatgatagaacaggttgaaaattttctagtttaactgaaatatgaatttctgatggcttatatctcatttcagattctctacatctgcactgatggaaaggataccaagtagatggccacggcctgtctggcatgctccttggaagaattatagggtaactttttcctcattagtgctggattttctagttttgcctatgatttgcactaatggtttctcaaaatgtgtgcaggtgatcagtggtcacttgggatgggtgcggtcaattgcatttgatccaagtaacgaatggttctgtacgggttctgccgacaggacgattaaggtgagcttgctctcttcttctgcagtagtgttccaatatgctctgggatttttacatgttactagctgaatgcccgtgctttgcgacaggaattAaaaaagagaaccccgccatacactttaaagcctcaaaaattaaaataaaattattctaattgtaaaactctttaggtcatattattcgtcatcatttttatctcaatttaaaataaactttccttgtttgatggcgtaaggttggggaagggaaagtccacatatctcactgtttggtgggtggtggtgggtggtggcagattcaccactcaccaccaccattggggtcttttagaggagtatagatttagtttgtttatgttgctttttattattctaagctgtttgtgaacgttttgtggcatacatctgaaatcttcatagatttatttttttgctggattgctatacatcccttacaaattttcttcaacaaaagaccacgtggtatgataatggcaagtgaggctagggccatttgacacaacaaagtgttgttttctgagacttgcactctttatatgaatacaaactcccctttcttctttacactaatttctgttgatatacatatccagtatgggcactgatcatagggtatcagcataccacaactttatttcatctcgtatatagcacttttattcgtttaagggctagttttgagctcgataacagatgtctgtttttttttaattctattaaaatttttctgtttgcttgttgcaatttcttcaagtctagcaatcttgttactcctaacagtgtatatgttctgttactctgtggatgacccctggaggattcagaaaaatactgagtgcttattagttgttcgtgaagtcctattatcagggtttatttggccattaagtttttactagctgtttcttttggatgatcttatggttctgatagaaaaacgaggctatcctttttctctctttccctcctcacatttactagtacattaagtcaacaaaccgacttccccaacaagcaacactactataatttctaaatgctgttagctcattcatcatgtgattctgtcttgttgtagatctgggaccttgcatcaggaacattgaagcttacattgactggccatattgaacaaattcgtggtacgtttttcttggcattggttattaggatctgtatagcagccttccactgctacttgttttactctataagttataagttcatttactgataaattcaatgtgcattgtagggcttgctgtgagccaacggcacacatatttattttctgctggtgatgacaaacaagtaaagtgttgggatcttgaacaaaacaaggttagcttatagttcgatgtagattgcagtatacagggcatattggcattatcgtaacatttcgtttcttttcatttttaaggttattaggtcttatcatggccatttgagtggggtgtactgccttgctctacatccaacaatcgatatcttgctgactggtggtcgcgattcagtttgtagggtatataatcacctcttttatttatatcttatgcataatcattagcatacattgtactaaggtaggttcgggtttttgctgaccttcatacacaggtctgggacatccgaacgaaagctcatgtttctgctttaactggtcatgataacaccgtatgctcagtgtttgctcgtcctacggtaagaaagcttttgaatcttttgcagcttattactgcaatatctagttttgcgacttaatgttattctttagttggaggctttcttgttcatagccatgtagatcagctgagttttccttttaaaaattcaatgacaaaactacgcaacaatgatcttgagcacagttatcttacacttttgaggttgttccttgtgctggatagtttcttgacaactgaagtacatactggcttcattctttgaaaagttaatcgtatgtttatttgtctcaggatccacaagttgtcacgggctcacatgattcaactatcaagttctgggaccttgtagctggtatttactttagaattttactactgtgttacttgagtgttttcttgtatctgtccctttacagttatttttcctataggaaggactatgtgtactcttacacatcataagaaatcagttcgggctatggcgctgcatccaaaagagttagtttcaatgccattaaattttcatactatctagtatctaccctgctggaaataattataattttttttcttgtgcaggaaatcgtttgcatctgcatcagcagacaatataaagaagtttagcctgcccaaaggcgaatttctacacaatatgctgtgagcattcttttcacattgttttttgttaacagtgtttgtgatattttttttttatgtaaatagcactggcattttatattgtgcattgtaatatgcttggatactggatttgaagctcatgtagcttatatgtaagatctgcttaggagtccaataaccttgaactcactttcttcttttaacctctaagctagttaacctgaaagagttaggatatttgaactgagcctctctagtaagctagactatggaaaagtatcaattaccctatacttacatttagctgtagtcctgtttaaattttactttttactgagtaatgaagcatactgtttgttgcctttccatctttggtgtgtttccttggcttcagtttaaactcttaaatcgtgcacccttttttatacttaacatgaagctgcaggctggagatatattttgaaacagaaatagggtttgattggaggtatttcgaggttgatctaaggaaaagaaaatcatattcagatgccttagcaatgtgatttcaagggctttgcttactgttgtaacttgtaaacgaacaatagctaggatcatataacttaaacttgtcaccgattgtcacctttcaggtcccagcagaaaaccatcataaactcaatggctgtaaatgaagatggtgtcttggcaactggaggtatgcattgttgaaaacatcgagtttttgccttcttcctatttattttattaaagaaaaagatggtttaatgtatttagtaatgctgtattttctatgctatacttgctggccgcaaccgattcaataaaattttttgcagatcatattattaaaagtagtaatatcttgtgcaggggataatgggagtctctggttttgggattggaagagtggccataactttcaacaagatcagactatagtacaacctggtaagtattgatttgcatcatgtatgggctgttattatgtttctttaagtcactaaatcgatcatcttgattgatcttatttccaattataggatcattggagagtgaggcatgcatatatgccctttcatacgatgttagtggatcacggctggtgacatgtgaagctgacaagacaataaaaatgtggaaggaagatttgtcagccactccagagacccatcctatcaatttcaagcctccaaaggacatcagaagatactgatcagacacctggtgcatctaatttcagacagggtacttttaactccctaaatacctatgttgttgtagtgtttatgctaaattcaaattggttgaatcacactagggattccatgcatcgccatggaatggacctgtctgaattttgccgtgcttcgcaaatcctccttatctaccgaacagaatattgactgtaagaagttttcatatattagaagagtttcctcttggcgaacatatctgggtttgcccatagttgtggcacagcattgcatttttctttctattcttttcttttcaTttttttttggagagggcattgcattcacatagcttccggataatataatcctatcgttggatgtaaagcccctatagggctttaatcagcacgtgacttgcacgtgcgttgacatgtggagcggcgacaccagaactcctgccggtcatgtattgtatgtttcagtaaagttactcttcaaattttagtgcggcatcctgtaaagttactcttaaaatttatgctcaatactcctatatggtatttctatacctgggagcaaaattgtcatgcc
More
|
||||||||||
| CDS seq | atggcgacggcggagccggtggagccgcagtcgctgaagaagctgagcctcaagtcgctcaagcgctcgcacgacctcttcgcgcccacccactccctcctcttcactcccgatccggagagtaagcaggttcgtgtcggctgcaaggtgaatgcagagtacagcgcggtgaagaacctaccaacagatcagggccgaggacaggtcaagagtgctgcggcaccttcaactgcattggcgcttccaggaacacaagatgtcaaagatgctgataacaaaggcagcagtactgctattgttcctgcaccacatatgctccccaaagcaccggattcaacgataccaggcaagaatacaactataacaattcctggttcatctgacagattctctacatctgcactgatggaaaggataccaagtagatggccacggcctgtctggcatgctccttggaagaattatagggtgatcagtggtcacttgggatgggtgcggtcaattgcatttgatccaagtaacgaatggttctgtacgggttctgccgacaggacgattaagatctgggaccttgcatcaggaacattgaagcttacattgactggccatattgaacaaattcgtgggcttgctgtgagccaacggcacacatatttattttctgctggtgatgacaaacaagtaaagtgttgggatcttgaacaaaacaaggttattaggtcttatcatggccatttgagtggggtgtactgccttgctctacatccaacaatcgatatcttgctgactggtggtcgcgattcagtttgtagggtctgggacatccgaacgaaagctcatgtttctgctttaactggtcatgataacaccgtatgctcagtgtttgctcgtcctacggatccacaagttgtcacgggctcacatgattcaactatcaagttctgggaccttgtagctggaaggactatgtgtactcttacacatcataagaaatcagttcgggctatggcgctgcatccaaaagagaaatcgtttgcatctgcatcagcagacaatataaagaagtttagcctgcccaaaggcgaatttctacacaatatgctgtcccagcagaaaaccatcataaactcaatggctgtaaatgaagatggtgtcttggcaactggaggggataatgggagtctctggttttgggattggaagagtggccataactttcaacaagatcagactatagtacaacctggatcattggagagtgaggcatgcatatatgccctttcatacgatgttagtggatcacggctggtgacatgtgaagctgacaagacaataaaaatgtggaaggaagatttgtcagccactccagagacccatcctatcaatttcaagcctccaaaggacatcagaagatactga
More
|
||||||||||
| Protein seq | MATAEPVEPQSLKKLSLKSLKRSHDLFAPTHSLLFTPDPESKQVRVGCKVNAEYSAVKNLPTDQGRGQVKSAAAPSTALALPGTQDVKDADNKGSSTAIVPAPHMLPKAPDSTIPGKNTTITIPGSSDRFSTSALMERIPSRWPRPVWHAPWKNYRVISGHLGWVRSIAFDPSNEWFCTGSADRTIKIWDLASGTLKLTLTGHIEQIRGLAVSQRHTYLFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLALHPTIDILLTGGRDSVCRVWDIRTKAHVSALTGHDNTVCSVFARPTDPQVVTGSHDSTIKFWDLVAGRTMCTLTHHKKSVRAMALHPKEKSFASASADNIKKFSLPKGEFLHNMLSQQKTIINSMAVNEDGVLATGGDNGSLWFWDWKSGHNFQQDQTIVQPGSLESEACIYALSYDVSGSRLVTCEADKTIKMWKEDLSATPETHPINFKPPKDIRRY |
||||||||||
| Function | Protein pleiotropic regulatory locus 1 [UniProtKB/Swiss-Prot:Q42384] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_03g0016770 | OsLiXu_03g0016770.01 | Chr03 | 12991458 | 12997774 | + | NAM | ||
| CDS seq | atggcgacggcggagccggtggagccgcagtcgctgaagaagctgagcctcaagtcgctcaagcgctcgcacgacctcttcgcgcccacccactccctcctcttcactcccgatccggagagtaagcaggttcgtgtcggctgcaaggtgaatgcagagtacagcgcggtgaagaacctaccaacagatcagggccgaggacaggtcaagagtgctgcggcaccttcaactgcattggcgcttccaggaacacaagatgtcaaagatgctgataacaaaggcagcagtactgctattgttcctgcaccacatatgctccccaaagcaccggattcaacgataccaggcaagaatacaactataacaattcctggttcatctgacagattctctacatctgcactgatggaaaggataccaagtagatggccacggcctgtctggcatgctccttggaagaattatagggtgatcagtggtcacttgggatgggtgcggtcaattgcatttgatccaagtaacgaatggttctgtacgggttctgccgacaggacgattaagatctgggaccttgcatcaggaacattgaagcttacattgactggccatattgaacaaattcgtgggcttgctgtgagccaacggcacacatatttattttctgctggtgatgacaaacaagtaaagtgttgggatcttgaacaaaacaaggttattaggtcttatcatggccatttgagtggggtgtactgccttgctctacatccaacaatcgatatcttgctgactggtggtcgcgattcagtttgtagggtctgggacatccgaacgaaagctcatgtttctgctttaactggtcatgataacaccgtatgctcagtgtttgctcgtcctacggatccacaagttgtcacgggctcacatgattcaactatcaagttctgggaccttgtagctggaaggactatgtgtactcttacacatcataagaaatcagttcgggctatggcgctgcatccaaaagagaaatcgtttgcatctgcatcagcagacaatataaagaagtttagcctgcccaaaggcgaatttctacacaatatgctgtcccagcagaaaaccatcataaactcaatggctgtaaatgaagatggtgtcttggcaactggaggggataatgggagtctctggttttgggattggaagagtggccataactttcaacaagatcagactatagtacaacctggatcattggagagtgaggcatgcatatatgccctttcatacgatgttagtggatcacggctggtgacatgtgaagctgacaagacaataaaaatgtggaaggaagatttgtcagccactccagagacccatcctatcaatttcaagcctccaaaggacatcagaagatactga
More
|
|||||||
| Protein seq | MATAEPVEPQSLKKLSLKSLKRSHDLFAPTHSLLFTPDPESKQVRVGCKVNAEYSAVKNLPTDQGRGQVKSAAAPSTALALPGTQDVKDADNKGSSTAIVPAPHMLPKAPDSTIPGKNTTITIPGSSDRFSTSALMERIPSRWPRPVWHAPWKNYRVISGHLGWVRSIAFDPSNEWFCTGSADRTIKIWDLASGTLKLTLTGHIEQIRGLAVSQRHTYLFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLALHPTIDILLTGGRDSVCRVWDIRTKAHVSALTGHDNTVCSVFARPTDPQVVTGSHDSTIKFWDLVAGRTMCTLTHHKKSVRAMALHPKEKSFASASADNIKKFSLPKGEFLHNMLSQQKTIINSMAVNEDGVLATGGDNGSLWFWDWKSGHNFQQDQTIVQPGSLESEACIYALSYDVSGSRLVTCEADKTIKMWKEDLSATPETHPINFKPPKDIRRY
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_03g0016770 | OsLiXu_03g0016770.02 | Chr03 | 12991467 | 12997437 | + | IsoSeq | ||
| CDS seq | cacagcggctgcttccccctctctcttccgcctcggcgagcagcgacaccaccggagcagggcggccggcggcgacgggcggggcccgacggggaggaggtaggcgggcttggatctgcagggctcacgcggcgtaagagcaggggaagccgtatctccggcggcgttcatcgcagcaggaagtcgtcatggcgacggcggagccggtggagccgcagt
More
|
|||||||
| Protein seq | HSGCFPLSLPPRRAATPPEQGGRRRRAGPDGEEVGGLGSAGLTRRKSRGSRISGGVHRSRKSSWRRRSRWSRS |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr03 | 12991923 | 12992042 | + | OsLiXu_03g0016770.01 | OsLiXu_03g0016770.02,OsLiXu_03g0016770.01 | All |
| RI | Chr03 | 12995922 | 12996681 | + | OsLiXu_03g0016770.02 | OsLiXu_03g0016770.02,OsLiXu_03g0016770.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 2.113659 | 0.957998 | 2.239881 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0339100 | RBH | 2.649955 | 3.303197 | 6.920332 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g21990 | RBH | 1.765254 | 2.188471 | 1.564223 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0339100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0017080 | RBH | 1.556036 | 15.875524 | 11.765519 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0016920 | RBH | 0.484209 | 4.479220 | 3.861435 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0016930 | RBH | 4.632805 | 17.712292 | 11.479846 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0016930 | RBH | 0.192698 | 0.585157 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0016720 | RBH | 8.324407 | 19.843950 | 23.687164 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0208200 | RBH | 14.1874295 | 24.3535365 | 52.893324 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0016580 | RBH | 0.725527 | 1.663381 | 1.751366 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0212800 | RBH | 14.8303855 | 21.576073 | 45.4948975 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0016810 | RBH | 0.315480 | 0.400738 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0016850 | RBH | 1.462283 | 17.926580 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0016880 | RBH | 7.451372 | 36.632149 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0016680 | RBH | 0.859550 | 5.617545 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G016640 | RBH | 0.711124 | 5.315541 | 5.255104 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0016610 | RBH | 2.384703 | 25.402906 | 9.360389 |
