Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_02g0029760 | OGI:02080810 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr02:30312773-30314939 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | actcgaaatgcatatttaccatcatttatataactcatcagtcttgttttcattgcacaacagtataatactataattgatctaacattgtggatcatacacaacaaaggaattaatcttacacttgcatgaaacacaaggaaaatgtccatatttacatcaatcacagagagatgccatgccactatggcagcccagccgtctcaccagtagtttccgcagctgcatgcgccgcgcttgaagcggtggaaccggttccggtccctgacgacgatctccctcccgaagatctccgagatgagcgcgctgtacgcgtggcactccttgctcatccggaggttggtgacgaccctcaccggcgccccctccggcgtgctgagcaggccgaacgccatggccagcttctggctgtgcgccgcgaccacgcgccgcttctcctcctcgcctgcgtccagcgccagctccgacgtgtcgggcgtgtacccctcgaaccggagctgccactccatctggtgcagcatctcgtagatgtcgtccgcccgcgggtgcgacctgtcctgcgacacgaaccggtgcgtcgcgccgtgcacctcgacggcgctgtacccgggggcctgcgcgaggcccctgtccaccgcctccgtccggcgcgccgcggcggcgtcccggttgtgggccctggcgtgcatgtcggagaggattatgtagtcgccggcgttggtggcgccaaggcgctccagctcctgcagcgcgcgctcggcgagctccaggttgccgtggatgcggcacgcgttgagcaggctccgccacgccgtgtccgtcggccccgtgggcatgttcccgatgagcgcgcgcgcgtcgtccagcctccccgctcgcgccatgaggtccaccatgcagccgtagtgctgcgcgttgggtgtcagcttgtgctccagccgcatccggtcgaagcagcggagcccttcctcgaggaggccggcgcggctgcaggcgttcagcacgccgacgtacacggcggcgtcgggcctgtggccctccctgaccatcgcgtcgaacacctccagcgccttacgcccgtcgccgtgcaatgccaagccggacaccatggcgctgtacgtccacgcgttcttgtcgtccatcgcgtcgaacaccgccgccgcgttctcgatgcagccgcacttggcgtacatgtccaccagggacgtgctcatgaacgtgttcagcctcgcggtgttcctcagcagagcgcaatggatgctccggccgacgtcgtgggcgcccaggtgcgcgcacgccgagagcgcgctgaccatggagctctcgtcgggcctccatcccgcgcgcaccatggcgccgaacgactcgacgcactccgcccagcgtccggccctcgtgtacgccgcgagcagcgcgctccaggaagccgtcgtctgctcatcgtcctccatctgctcgaacgcgcggcgagccaggtcagcctcgccgcacttgccgtagaagctgatgaggctgttctgcgagtgctcgtcacgctgaaacccgagcttcacgaggtgtccctgcaactgcaatcgcaaaaaaaaggagaaaaaaattgaagccccaattcaccggatttcagatcactcgcacggtgctcaggtcagtgtgagctgaaactgtcacctgtctcccttcttgcaaggcgccgagctgggcgcacgccttgaagacgaacgggaacgtgtagctgtcgggctcaacgccgtcatccaccatgtccacgaacagccgcagcgcggccgcggggtcgcggccgccgccgccgccgccggcgacgtagccgcgcatcagggtgttgtagtcgaacgcctcggggtcgtcgagcgccgcgaagatggaggccgcgtaggccatgctcccgggccagtcggcggcgagcgcgcacgccgcgaggagcggccgcgcgtgccgcggcgagcggtcgaggccgagcttgacgtgccgcgcgtgcgccttcctcgcctcgtccaggctcgcgcatggcgcccggtgatccctccccctgaaggccgcctgctccgccgcctgcgcctgcgccggcgacgtcgcggcgatcccgacctggtgctgcgcctgggagagcactaaaccccccaccatgctacatggagcgccggcgttc
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| CDS seq | atggtggggggtttagtgctctcccaggcgcagcaccaggtcgggatcgccgcgacgtcgccggcgcaggcgcaggcggcggagcaggcggccttcagggggagggatcaccgggcgccatgcgcgagcctggacgaggcgaggaaggcgcacgcgcggcacgtcaagctcggcctcgaccgctcgccgcggcacgcgcggccgctcctcgcggcgtgcgcgctcgccgccgactggcccgggagcatggcctacgcggcctccatcttcgcggcgctcgacgaccccgaggcgttcgactacaacaccctgatgcgcggctacgtcgccggcggcggcggcggcggccgcgaccccgcggccgcgctgcggctgttcgtggacatggtggatgacggcgttgagcccgacagctacacgttcccgttcgtcttcaaggcgtgcgcccagctcggcgccttgcaagaagggagacagttgcagggacacctcgtgaagctcgggtttcagcgtgacgagcactcgcagaacagcctcatcagcttctacggcaagtgcggcgaggctgacctggctcgccgcgcgttcgagcagatggaggacgatgagcagacgacggcttcctggagcgcgctgctcgcggcgtacacgagggccggacgctgggcggagtgcgtcgagtcgttcggcgccatggtgcgcgcgggatggaggcccgacgagagctccatggtcagcgcgctctcggcgtgcgcgcacctgggcgcccacgacgtcggccggagcatccattgcgctctgctgaggaacaccgcgaggctgaacacgttcatgagcacgtccctggtggacatgtacgccaagtgcggctgcatcgagaacgcggcggcggtgttcgacgcgatggacgacaagaacgcgtggacgtacagcgccatggtgtccggcttggcattgcacggcgacgggcgtaaggcgctggaggtgttcgacgcgatggtcagggagggccacaggcccgacgccgccgtgtacgtcggcgtgctgaacgcctgcagccgcgccggcctcctcgaggaagggctccgctgcttcgaccggatgcggctggagcacaagctgacacccaacgcgcagcactacggctgcatggtggacctcatggcgcgagcggggaggctggacgacgcgcgcgcgctcatcgggaacatgcccacggggccgacggacacggcgtggcggagcctgctcaacgcgtgccgcatccacggcaacctggagctcgccgagcgcgcgctgcaggagctggagcgccttggcgccaccaacgccggcgactacataatcctctccgacatgcacgccagggcccacaaccgggacgccgccgcggcgcgccggacggaggcggtggacaggggcctcgcgcaggcccccgggtacagcgccgtcgaggtgcacggcgcgacgcaccggttcgtgtcgcaggacaggtcgcacccgcgggcggacgacatctacgagatgctgcaccagatggagtggcagctccggttcgaggggtacacgcccgacacgtcggagctggcgctggacgcaggcgaggaggagaagcggcgcgtggtcgcggcgcacagccagaagctggccatggcgttcggcctgctcagcacgccggagggggcgccggtgagggtcgtcaccaacctccggatgagcaaggagtgccacgcgtacagcgcgctcatctcggagatcttcgggagggagatcgtcgtcagggaccggaaccggttccaccgcttcaagcgcggcgcatgcagctgcggaaactactggtga
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| Protein seq | MVGGLVLSQAQHQVGIAATSPAQAQAAEQAAFRGRDHRAPCASLDEARKAHARHVKLGLDRSPRHARPLLAACALAADWPGSMAYAASIFAALDDPEAFDYNTLMRGYVAGGGGGGRDPAAALRLFVDMVDDGVEPDSYTFPFVFKACAQLGALQEGRQLQGHLVKLGFQRDEHSQNSLISFYGKCGEADLARRAFEQMEDDEQTTASWSALLAAYTRAGRWAECVESFGAMVRAGWRPDESSMVSALSACAHLGAHDVGRSIHCALLRNTARLNTFMSTSLVDMYAKCGCIENAAAVFDAMDDKNAWTYSAMVSGLALHGDGRKALEVFDAMVREGHRPDAAVYVGVLNACSRAGLLEEGLRCFDRMRLEHKLTPNAQHYGCMVDLMARAGRLDDARALIGNMPTGPTDTAWRSLLNACRIHGNLELAERALQELERLGATNAGDYIILSDMHARAHNRDAAAARRTEAVDRGLAQAPGYSAVEVHGATHRFVSQDRSHPRADDIYEMLHQMEWQLRFEGYTPDTSELALDAGEEEKRRVVAAHSQKLAMAFGLLSTPEGAPVRVVTNLRMSKECHAYSALISEIFGREIVVRDRNRFHRFKRGACSCGNYW |
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| Function | Pentatricopeptide repeat-containing protein At1g31920 [UniProtKB/Swiss-Prot:Q9C6T2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_02g0029760 | OsLiXu_02g0029760.01 | Chr02 | 30312773 | 30314939 | - | NAM | ||
| CDS seq | atggtggggggtttagtgctctcccaggcgcagcaccaggtcgggatcgccgcgacgtcgccggcgcaggcgcaggcggcggagcaggcggccttcagggggagggatcaccgggcgccatgcgcgagcctggacgaggcgaggaaggcgcacgcgcggcacgtcaagctcggcctcgaccgctcgccgcggcacgcgcggccgctcctcgcggcgtgcgcgctcgccgccgactggcccgggagcatggcctacgcggcctccatcttcgcggcgctcgacgaccccgaggcgttcgactacaacaccctgatgcgcggctacgtcgccggcggcggcggcggcggccgcgaccccgcggccgcgctgcggctgttcgtggacatggtggatgacggcgttgagcccgacagctacacgttcccgttcgtcttcaaggcgtgcgcccagctcggcgccttgcaagaagggagacagttgcagggacacctcgtgaagctcgggtttcagcgtgacgagcactcgcagaacagcctcatcagcttctacggcaagtgcggcgaggctgacctggctcgccgcgcgttcgagcagatggaggacgatgagcagacgacggcttcctggagcgcgctgctcgcggcgtacacgagggccggacgctgggcggagtgcgtcgagtcgttcggcgccatggtgcgcgcgggatggaggcccgacgagagctccatggtcagcgcgctctcggcgtgcgcgcacctgggcgcccacgacgtcggccggagcatccattgcgctctgctgaggaacaccgcgaggctgaacacgttcatgagcacgtccctggtggacatgtacgccaagtgcggctgcatcgagaacgcggcggcggtgttcgacgcgatggacgacaagaacgcgtggacgtacagcgccatggtgtccggcttggcattgcacggcgacgggcgtaaggcgctggaggtgttcgacgcgatggtcagggagggccacaggcccgacgccgccgtgtacgtcggcgtgctgaacgcctgcagccgcgccggcctcctcgaggaagggctccgctgcttcgaccggatgcggctggagcacaagctgacacccaacgcgcagcactacggctgcatggtggacctcatggcgcgagcggggaggctggacgacgcgcgcgcgctcatcgggaacatgcccacggggccgacggacacggcgtggcggagcctgctcaacgcgtgccgcatccacggcaacctggagctcgccgagcgcgcgctgcaggagctggagcgccttggcgccaccaacgccggcgactacataatcctctccgacatgcacgccagggcccacaaccgggacgccgccgcggcgcgccggacggaggcggtggacaggggcctcgcgcaggcccccgggtacagcgccgtcgaggtgcacggcgcgacgcaccggttcgtgtcgcaggacaggtcgcacccgcgggcggacgacatctacgagatgctgcaccagatggagtggcagctccggttcgaggggtacacgcccgacacgtcggagctggcgctggacgcaggcgaggaggagaagcggcgcgtggtcgcggcgcacagccagaagctggccatggcgttcggcctgctcagcacgccggagggggcgccggtgagggtcgtcaccaacctccggatgagcaaggagtgccacgcgtacagcgcgctcatctcggagatcttcgggagggagatcgtcgtcagggaccggaaccggttccaccgcttcaagcgcggcgcatgcagctgcggaaactactggtga
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| Protein seq | MVGGLVLSQAQHQVGIAATSPAQAQAAEQAAFRGRDHRAPCASLDEARKAHARHVKLGLDRSPRHARPLLAACALAADWPGSMAYAASIFAALDDPEAFDYNTLMRGYVAGGGGGGRDPAAALRLFVDMVDDGVEPDSYTFPFVFKACAQLGALQEGRQLQGHLVKLGFQRDEHSQNSLISFYGKCGEADLARRAFEQMEDDEQTTASWSALLAAYTRAGRWAECVESFGAMVRAGWRPDESSMVSALSACAHLGAHDVGRSIHCALLRNTARLNTFMSTSLVDMYAKCGCIENAAAVFDAMDDKNAWTYSAMVSGLALHGDGRKALEVFDAMVREGHRPDAAVYVGVLNACSRAGLLEEGLRCFDRMRLEHKLTPNAQHYGCMVDLMARAGRLDDARALIGNMPTGPTDTAWRSLLNACRIHGNLELAERALQELERLGATNAGDYIILSDMHARAHNRDAAAARRTEAVDRGLAQAPGYSAVEVHGATHRFVSQDRSHPRADDIYEMLHQMEWQLRFEGYTPDTSELALDAGEEEKRRVVAAHSQKLAMAFGLLSTPEGAPVRVVTNLRMSKECHAYSALISEIFGREIVVRDRNRFHRFKRGACSCGNYW
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 2.277810 | 0.115112 | 0.776297 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0697500 | RBH | 1.695597 | 2.177579 | 2.329422 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g46980 | RBH | 1.115855 | 1.342147 | 0.399383 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0697500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0030030 | RBH | 1.646637 | 0.0 | 2.213699 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0030100 | RBH | 0.936326 | 0.0 | 0.302984 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0029960 | RBH | 5.868873 | 0.000000 | 1.188996 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0029560 | RBH | 0.728875 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0029770 | RBH | 13.616837 | 0.0 | 9.565030 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0466300 | RBH | 39.6139695 | 1.600282 | 1.639096 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0029570 | RBH | 1.279400 | 0.000000 | 0.160462 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0493800 | RBH | 34.4839475 | 1.3016825 | 0.6596175 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0029860 | RBH | 0.467583 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0029610 | RBH | 1.271619 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0029920 | RBH | 26.599758 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0019870 | SBH | 0.215597 | 0.211390 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0029440 | RBH | 2.441243 | 1.316251 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G030020 | RBH | 1.489385 | 0.0 | 2.459358 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0029790 | RBH | 7.642558 | 0.0 | 1.835871 |
