Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_02g0024850 | OGI:02001240 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr02:25849959-25852137 | ||||||||
| Gene Symbol | LRK2, OsLRK2, OsPSKR8, PSKR8 | ||||||||||
| DNA seq | atggtgctggtgcctgagccaagtataaaggtctagcagaacaggtctgaggagaatttggcatgtccacacgaggaagaggtctgctaatctcttgtcagttggtatttcgtacattcctttctcttatttcttgttgcaagattacctagggtaggcgcatatcctgcttatattatgaagtcgatgtgaaccgtatgatcgttcaatcgattatggtcagcttgcagaggagaccataagttcacttgaacgcttatacgtatatgcttttattttttgcaggtaacgaaagcttcatgcgtgccaagcaacaactgaaaatcaccatggttgtactgttggcattgctgctactgacttacggatttggcaacgtcaggtgcctacctaaccatgatgattacagcgtcgatctgcaggcgctgctcgggttcaagcagggcatcaccagcgatccaaatggagccttgagcaattggaacaccagcacccacttctgtaggtggaacggtgtcaactgcagccaggtgagaccttggcgcgtcacggggctcaacctcactagaaaaagtctatcaggccagatctcatcttctcttggaaacttaacgttcctacgaaagcttcttctccgtgataataacttttaggaaaatgcttcaccccgggcgaccggcacgggggagctggatcggttgctcccccgcgcgtgccctccaccacgtgagcacctgttgggcccacccacttctccctcctttttttttacaaaagatgtttcacctagtttatttacattgtttcactatttatagatctaatgttgcagtgaattaaaatattattttgcaataaaaacccacatattttggaacccctctattaagggaattcggtttattttttgttccaccaaaaatgtttcacctagtgtattcacaatgtttcactatgtatagatctaatgttgcagtgaactgaaatactccattgcaacAaaaaacccacatattttggaaaccccctattaagggaatttggtttattttttgttccactgaaaatgtttcacctagtgtatttataatgtttcattatgtatggatcaaatgttgcagtgaactaaaatattctttcactatttgctgaaacattattattctataaggtgaaacaacacccgatttaaacgagtgaaacattttcgatcacttagtgaaacaattccgatatacctggtggaatatcgtgcaacatttaaaaataattcaataataagctatttttttttcatcagaatatatccatgtatggtcttgttttgaagatttaattgcaacgaatttaatggtgaaatcggatcatgatttggataagtaatttaagagaaaaatcagtttaaagtagtttttgcacgtaaatcgggcggacgtcaacgcctgatttttctcctgatcgatcgatcgggcgcccgacgcgtagagtcatcctaacttttatggtcccatacctcttctagatgatcttcaacaccgagaagtccttaatctgagacaaaacagtttgaacggaattattccagatggacttgcaaattgctccagcctgaccgccttagccctctctagcaacaatctaatgggcaggattcctcctaccatagggaatctttccatgctacttggtttggacctttcccagaacaatctcgctgggatcatcccgcaagacctcggaaaaattgccagtttacagtatgtcgatctttcaagaaatcaactcaacggtggcattcctaacgagttttggcagtcgcaaaacataagggtgttgtacctaaaccaaaataatctgtcagttagactcccacaaattctccctaacgtgtcttatcttacggaattatccttggcgtccaatatgttagtcagcacattgccatgtaacatcggcgacgccatacctaacatccaactcctatacttaggaaataacacgttcgaaggtaacatcccagattcaataggcaatgcttcagagctaacagaattggatctattgtcaaataattttgatggcactggtggagaaaccatctttcgtcggtcggccgatttccacaatagtccggttgcaataaaaaccggggctaaaaatgatctttagtcccggttca
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| CDS seq | atggtgctggtgcctgagccaagtaacgaaagcttcatgcgtgccaagcaacaactgaaaatcaccatggttgtactgttggcattgctgctactgacttacggatttggcaacgtcaggtgcctacctaaccatgatgattacagcgtcgatctgcaggcgctgctcgggttcaagcagggcatcaccagcgatccaaatggagccttgagcaattggaacaccagcacccacttctgtaggtggaacggtgtcaactgcagccaggtgagaccttggcgcgtcacggggctcaacctcactagaaaaagtctatcaggccagatctcatcttctcttggaaacttaacgttcctacgaaagcttcttctccatgatcttcaacaccgagaagtccttaatctgagacaaaacagtttgaacggaattattccagatggacttgcaaattgctccagcctgaccgccttagccctctctagcaacaatctaatgggcaggattcctcctaccatagggaatctttccatgctacttggtttggacctttcccagaacaatctcgctgggatcatcccgcaagacctcggaaaaattgccagtttacagtatgtcgatctttcaagaaatcaactcaacggtggcattcctaacgagttttggcagtcgcaaaacataagggtgttgtacctaaaccaaaataatctgtcagttagactcccacaaattctccctaacgtgtcttatcttacggaattatccttggcgtccaatatgttagtcagcacattgccatgtaacatcggcgacgccatacctaacatccaactcctatacttaggaaataacacgttcgaaggtaacatcccagattcaataggcaatgcttcagagctaacagaattggatctattgtcaaataattttgatggcactggtggagaaaccatctttcgtcggtcggccgatttccacaatagtccggttgcaataaaaaccggggctaaaaatgatctttag
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| Protein seq | MVLVPEPSNESFMRAKQQLKITMVVLLALLLLTYGFGNVRCLPNHDDYSVDLQALLGFKQGITSDPNGALSNWNTSTHFCRWNGVNCSQVRPWRVTGLNLTRKSLSGQISSSLGNLTFLRKLLLHDLQHREVLNLRQNSLNGIIPDGLANCSSLTALALSSNNLMGRIPPTIGNLSMLLGLDLSQNNLAGIIPQDLGKIASLQYVDLSRNQLNGGIPNEFWQSQNIRVLYLNQNNLSVRLPQILPNVSYLTELSLASNMLVSTLPCNIGDAIPNIQLLYLGNNTFEGNIPDSIGNASELTELDLLSNNFDGTGGETIFRRSADFHNSPVAIKTGAKNDL |
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| Function | LRR receptor-like serine/threonine-protein kinase EFR [UniProtKB/Swiss-Prot:C0LGT6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_02g0024850 | OsLiXu_02g0024850.01 | Chr02 | 25849959 | 25852137 | + | NAM | ||
| CDS seq | atggtgctggtgcctgagccaagtaacgaaagcttcatgcgtgccaagcaacaactgaaaatcaccatggttgtactgttggcattgctgctactgacttacggatttggcaacgtcaggtgcctacctaaccatgatgattacagcgtcgatctgcaggcgctgctcgggttcaagcagggcatcaccagcgatccaaatggagccttgagcaattggaacaccagcacccacttctgtaggtggaacggtgtcaactgcagccaggtgagaccttggcgcgtcacggggctcaacctcactagaaaaagtctatcaggccagatctcatcttctcttggaaacttaacgttcctacgaaagcttcttctccatgatcttcaacaccgagaagtccttaatctgagacaaaacagtttgaacggaattattccagatggacttgcaaattgctccagcctgaccgccttagccctctctagcaacaatctaatgggcaggattcctcctaccatagggaatctttccatgctacttggtttggacctttcccagaacaatctcgctgggatcatcccgcaagacctcggaaaaattgccagtttacagtatgtcgatctttcaagaaatcaactcaacggtggcattcctaacgagttttggcagtcgcaaaacataagggtgttgtacctaaaccaaaataatctgtcagttagactcccacaaattctccctaacgtgtcttatcttacggaattatccttggcgtccaatatgttagtcagcacattgccatgtaacatcggcgacgccatacctaacatccaactcctatacttaggaaataacacgttcgaaggtaacatcccagattcaataggcaatgcttcagagctaacagaattggatctattgtcaaataattttgatggcactggtggagaaaccatctttcgtcggtcggccgatttccacaatagtccggttgcaataaaaaccggggctaaaaatgatctttag
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| Protein seq | MVLVPEPSNESFMRAKQQLKITMVVLLALLLLTYGFGNVRCLPNHDDYSVDLQALLGFKQGITSDPNGALSNWNTSTHFCRWNGVNCSQVRPWRVTGLNLTRKSLSGQISSSLGNLTFLRKLLLHDLQHREVLNLRQNSLNGIIPDGLANCSSLTALALSSNNLMGRIPPTIGNLSMLLGLDLSQNNLAGIIPQDLGKIASLQYVDLSRNQLNGGIPNEFWQSQNIRVLYLNQNNLSVRLPQILPNVSYLTELSLASNMLVSTLPCNIGDAIPNIQLLYLGNNTFEGNIPDSIGNASELTELDLLSNNFDGTGGETIFRRSADFHNSPVAIKTGAKNDL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0216000 | SBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g40130 | SBH | 0.573867 | 1.093673 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0216000 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0004120 | RBH | 0.124114 | 14.442955 | 1.259517 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0004260 | SBH | 0.069201 | 0.845967 | 0.776244 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0004360 | SBH | 0.038443 | 0.407024 | 0.900679 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0004020 | SBH | 0.031011 | 0.040793 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0024740 | SBH | 0.833541 | 0.0 | 0.566644 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0396300 | SBH | 0.6404455 | 0.2594735 | 0.4822715 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0004280 | SBH | 0.048594 | 0.017924 | 0.096358 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0425300 | SBH | 0.877423 | 0.2626745 | 4.1508945 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0004180 | SBH | 0.043297 | 0.057747 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0004210 | SBH | 0.000000 | 0.847441 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0004560 | SBH | 8.232897 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0024690 | SBH | 0.035031 | 0.082412 | 0.021348 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0004290 | SBH | 0.032945 | 0.534010 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G024900 | SBH | 0.199466 | 0.184480 | 0.440630 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0024890 | SBH | 0.206270 | 0.000000 | 0.311611 |
