Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_01g0036840 | OGI:01103410 | 15/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr01:36085280-36088229 | ||||||||
| Gene Symbol | OsSET4, SDG709, OsSUVH7 | ||||||||||
| DNA seq | gctcgcttcctcggttgctcactctgtgtgtgttccctccttgtgctgagccgcggccgcggccggccttccgcctcctcctcgcctcctcgcgcgcgccgctggcgagcggcctcggagtgcgcggcgtgtgcaagtgctcctactctccttcgcgatcccactctcctcctccgcacctcagctttgctctcgcgcagggccagcgagctggttcggagagggcggtgtggctggcctccccttccactgacctccgtctcgtctcttctcgaatcgaatcgaacgaactgaaggtattcattcttctctctacctcctcttccgcgatgattcgtggggcggcgtaggtagggtatccatcctgacctgggattgatttctttccctccacttaacacacacacagtttttattttattttattttGgggtgggaggggttctttgatgcatgttgcagtactgatctctattcgtttccgaaagaaataaaaatgaaaactttggggtttgagctgaacccccatgccccgtgctagtgttggcccctgcatctgtcaagtgtcaaagttgtctctcttttttttttttttgaagtgaattgtgcgaatagaggttagagaagtcgcatgcagatgctaaaggttgttcctttttttgttcattttggcaaacagtgatgtgccgggattaacctgtgatttgttaatgcagatagtcagctgatactagtgaagatgaaccgggaatcaaatttcatgcctactcctgatcaggatgttctggaagtcaagcccctgaggactttggctccaatgttccctgcaccattgggggtcgatgtgcttaaccggttgacagccccaccgttggtatttgtcgcaccagctgggcagtttcctgggggttttggatctttgaacattcctgcggtcagatcgtttgccgctttcggtggtcaggatgctagtggaggcaagactgctggtggtggtgatcaggatgctagtggaggcaagactgccgctggcggtgatcaggatgctggtagaggcgagactgctgcttttggtggtcaggaaactgtcagaggtgaatttgttgcaaatgggactccaaatgtaggtgctagtgcaactGggccaattgacgccactcctatctcagcttgcaaatcaacacaaccaagtgtgatatcactggatgatgatgacaatgatgatgatgagccttacggtggtaaccaaacatcagcatctggacggaagatcaagaggccatcccatctcaaaggatataatgtaagtgatggtttgggcaccgacagctccaacggaacaaagaaacgccctaagacctctaataggaaggctgctactgacaatgagatttccttgatgcctccatccagcgatcccagggaggttgtggaagtgcttctcatgaccttcgaggcactgcggcgtaggcatcttcaattggatgagacacaagagactagcaaacgtgcagacctgaaggctggtgccatcatgttggccagtaatctgagggctaacattgggaagaggattggagctgtccctggagttgaagtaggggatattttctacttcaggatggagctatgcattatcggcttgcatgcacctagcatgggtggaattgattatatgaataagtttggtgatgaggatgactctgtagcaatatgtattgttgctgcaggtgtttatgagaatgatgatgatgatacagatacactggtctacagtggttctggaggtataagcaggaacagtgaggagaagcaggaccagaagcttgagaggggtaaccttgctcttgagaggagcctgtccagaaagaacgtgatccgggttgtacgtggttacaaggatccagcttgcttgactgggaaagtttatatctatgatggtctttataagattcatgagtcctggaaagaaagaacaaagactgggatcaattgtttcaagtacaagttgcagcgagagccaggacagcctgatgcagttgcaatctggaagatgtgccagagatgggtagaaaatccagctgctagaggcaaagttttgcaccctgatctatcatctggtgctgaaaatctcccagtgtgtcttatcaatgatgttaacagtgagaaaggaccagggcacttcaactatattactcaggtcaagtacttgaagccactccgctctatgaagccatttcagggttgcagatgcactagtgtttgtctgcctggtgataccagttgtgattgtgcacagcataatggaggtgacttaccgtacagttcatccggattgcttgtatgtcgcaagcttatggtatatgaatgtggtgaatcttgccgatgttcaatcaactgtcgtaatagggtagcccaaaagggagtaaggatccaccttgaggtcttcaggacaacaaatcgaggctggggtcttcgttcatgggatcctatacgggctgggtcatttatttgtgagtatgttggtgaggttgttgatgatactaaagttaatttggatggtgaagatgattatctttttcgaactgtctgtcctggcgagaagacattaaaatggaattatgggcctgaattgataggggaacacagcataaatatttcagctgatacttttgagccgctgcccatcaagataagtgcaatgaaaatgggaaatgttgcacgtttcatgaaccatagttgcaaccctaacaccttctggcaaccagttcaatttgaccatggagaggatggttatccacacatcatgttcttcgcactgaagcatattcctcccatgacagaactgacttatgactatggcgacatcggatgtgaatctaggggtgtaggttctagagctaagaactgcctttgtggatcctcaaattgccggggcttttttagctga
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| CDS seq | atgaaccgggaatcaaatttcatgcctactcctgatcaggatgttctggaagtcaagcccctgaggactttggctccaatgttccctgcaccattgggggtcgatgtgcttaaccggttgacagccccaccgttggtatttgtcgcaccagctgggcagtttcctgggggttttggatctttgaacattcctgcggtcagatcgtttgccgctttcggtggtcaggatgctagtggaggcaagactgctggtggtggtgatcaggatgctagtggaggcaagactgccgctggcggtgatcaggatgctggtagaggcgagactgctgcttttggtggtcaggaaactgtcagaggtgaatttgttgcaaatgggactccaaatgtaggtgctagtgcaactGggccaattgacgccactcctatctcagcttgcaaatcaacacaaccaagtgtgatatcactggatgatgatgacaatgatgatgatgagccttacggtggtaaccaaacatcagcatctggacggaagatcaagaggccatcccatctcaaaggatataatgtaagtgatggtttgggcaccgacagctccaacggaacaaagaaacgccctaagacctctaataggaaggctgctactgacaatgagatttccttgatgcctccatccagcgatcccagggaggttgtggaagtgcttctcatgaccttcgaggcactgcggcgtaggcatcttcaattggatgagacacaagagactagcaaacgtgcagacctgaaggctggtgccatcatgttggccagtaatctgagggctaacattgggaagaggattggagctgtccctggagttgaagtaggggatattttctacttcaggatggagctatgcattatcggcttgcatgcacctagcatgggtggaattgattatatgaataagtttggtgatgaggatgactctgtagcaatatgtattgttgctgcaggtgtttatgagaatgatgatgatgatacagatacactggtctacagtggttctggaggtataagcaggaacagtgaggagaagcaggaccagaagcttgagaggggtaaccttgctcttgagaggagcctgtccagaaagaacgtgatccgggttgtacgtggttacaaggatccagcttgcttgactgggaaagtttatatctatgatggtctttataagattcatgagtcctggaaagaaagaacaaagactgggatcaattgtttcaagtacaagttgcagcgagagccaggacagcctgatgcagttgcaatctggaagatgtgccagagatgggtagaaaatccagctgctagaggcaaagttttgcaccctgatctatcatctggtgctgaaaatctcccagtgtgtcttatcaatgatgttaacagtgagaaaggaccagggcacttcaactatattactcaggtcaagtacttgaagccactccgctctatgaagccatttcagggttgcagatgcactagtgtttgtctgcctggtgataccagttgtgattgtgcacagcataatggaggtgacttaccgtacagttcatccggattgcttgtatgtcgcaagcttatggtatatgaatgtggtgaatcttgccgatgttcaatcaactgtcgtaatagggtagcccaaaagggagtaaggatccaccttgaggtcttcaggacaacaaatcgaggctggggtcttcgttcatgggatcctatacgggctgggtcatttatttgtgagtatgttggtgaggttgttgatgatactaaagttaatttggatggtgaagatgattatctttttcgaactgtctgtcctggcgagaagacattaaaatggaattatgggcctgaattgataggggaacacagcataaatatttcagctgatacttttgagccgctgcccatcaagataagtgcaatgaaaatgggaaatgttgcacgtttcatgaaccatagttgcaaccctaacaccttctggcaaccagttcaatttgaccatggagaggatggttatccacacatcatgttcttcgcactgaagcatattcctcccatgacagaactgacttatgactatggcgacatcggatgtgaatctaggggtgtaggttctagagctaagaactgcctttgtggatcctcaaattgccggggcttttttagctga
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| Protein seq | MNRESNFMPTPDQDVLEVKPLRTLAPMFPAPLGVDVLNRLTAPPLVFVAPAGQFPGGFGSLNIPAVRSFAAFGGQDASGGKTAGGGDQDASGGKTAAGGDQDAGRGETAAFGGQETVRGEFVANGTPNVGASATGPIDATPISACKSTQPSVISLDDDDNDDDEPYGGNQTSASGRKIKRPSHLKGYNVSDGLGTDSSNGTKKRPKTSNRKAATDNEISLMPPSSDPREVVEVLLMTFEALRRRHLQLDETQETSKRADLKAGAIMLASNLRANIGKRIGAVPGVEVGDIFYFRMELCIIGLHAPSMGGIDYMNKFGDEDDSVAICIVAAGVYENDDDDTDTLVYSGSGGISRNSEEKQDQKLERGNLALERSLSRKNVIRVVRGYKDPACLTGKVYIYDGLYKIHESWKERTKTGINCFKYKLQREPGQPDAVAIWKMCQRWVENPAARGKVLHPDLSSGAENLPVCLINDVNSEKGPGHFNYITQVKYLKPLRSMKPFQGCRCTSVCLPGDTSCDCAQHNGGDLPYSSSGLLVCRKLMVYECGESCRCSINCRNRVAQKGVRIHLEVFRTTNRGWGLRSWDPIRAGSFICEYVGEVVDDTKVNLDGEDDYLFRTVCPGEKTLKWNYGPELIGEHSINISADTFEPLPIKISAMKMGNVARFMNHSCNPNTFWQPVQFDHGEDGYPHIMFFALKHIPPMTELTYDYGDIGCESRGVGSRAKNCLCGSSNCRGFFS |
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| Function | Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1 [UniProtKB/Swiss-Prot:Q93YF5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_01g0036840 | OsLiXu_01g0036840.01 | Chr01 | 36085280 | 36088229 | + | NAM | ||
| CDS seq | atgaaccgggaatcaaatttcatgcctactcctgatcaggatgttctggaagtcaagcccctgaggactttggctccaatgttccctgcaccattgggggtcgatgtgcttaaccggttgacagccccaccgttggtatttgtcgcaccagctgggcagtttcctgggggttttggatctttgaacattcctgcggtcagatcgtttgccgctttcggtggtcaggatgctagtggaggcaagactgctggtggtggtgatcaggatgctagtggaggcaagactgccgctggcggtgatcaggatgctggtagaggcgagactgctgcttttggtggtcaggaaactgtcagaggtgaatttgttgcaaatgggactccaaatgtaggtgctagtgcaactGggccaattgacgccactcctatctcagcttgcaaatcaacacaaccaagtgtgatatcactggatgatgatgacaatgatgatgatgagccttacggtggtaaccaaacatcagcatctggacggaagatcaagaggccatcccatctcaaaggatataatgtaagtgatggtttgggcaccgacagctccaacggaacaaagaaacgccctaagacctctaataggaaggctgctactgacaatgagatttccttgatgcctccatccagcgatcccagggaggttgtggaagtgcttctcatgaccttcgaggcactgcggcgtaggcatcttcaattggatgagacacaagagactagcaaacgtgcagacctgaaggctggtgccatcatgttggccagtaatctgagggctaacattgggaagaggattggagctgtccctggagttgaagtaggggatattttctacttcaggatggagctatgcattatcggcttgcatgcacctagcatgggtggaattgattatatgaataagtttggtgatgaggatgactctgtagcaatatgtattgttgctgcaggtgtttatgagaatgatgatgatgatacagatacactggtctacagtggttctggaggtataagcaggaacagtgaggagaagcaggaccagaagcttgagaggggtaaccttgctcttgagaggagcctgtccagaaagaacgtgatccgggttgtacgtggttacaaggatccagcttgcttgactgggaaagtttatatctatgatggtctttataagattcatgagtcctggaaagaaagaacaaagactgggatcaattgtttcaagtacaagttgcagcgagagccaggacagcctgatgcagttgcaatctggaagatgtgccagagatgggtagaaaatccagctgctagaggcaaagttttgcaccctgatctatcatctggtgctgaaaatctcccagtgtgtcttatcaatgatgttaacagtgagaaaggaccagggcacttcaactatattactcaggtcaagtacttgaagccactccgctctatgaagccatttcagggttgcagatgcactagtgtttgtctgcctggtgataccagttgtgattgtgcacagcataatggaggtgacttaccgtacagttcatccggattgcttgtatgtcgcaagcttatggtatatgaatgtggtgaatcttgccgatgttcaatcaactgtcgtaatagggtagcccaaaagggagtaaggatccaccttgaggtcttcaggacaacaaatcgaggctggggtcttcgttcatgggatcctatacgggctgggtcatttatttgtgagtatgttggtgaggttgttgatgatactaaagttaatttggatggtgaagatgattatctttttcgaactgtctgtcctggcgagaagacattaaaatggaattatgggcctgaattgataggggaacacagcataaatatttcagctgatacttttgagccgctgcccatcaagataagtgcaatgaaaatgggaaatgttgcacgtttcatgaaccatagttgcaaccctaacaccttctggcaaccagttcaatttgaccatggagaggatggttatccacacatcatgttcttcgcactgaagcatattcctcccatgacagaactgacttatgactatggcgacatcggatgtgaatctaggggtgtaggttctagagctaagaactgcctttgtggatcctcaaattgccggggcttttttagctga
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| Protein seq | MNRESNFMPTPDQDVLEVKPLRTLAPMFPAPLGVDVLNRLTAPPLVFVAPAGQFPGGFGSLNIPAVRSFAAFGGQDASGGKTAGGGDQDASGGKTAAGGDQDAGRGETAAFGGQETVRGEFVANGTPNVGASATGPIDATPISACKSTQPSVISLDDDDNDDDEPYGGNQTSASGRKIKRPSHLKGYNVSDGLGTDSSNGTKKRPKTSNRKAATDNEISLMPPSSDPREVVEVLLMTFEALRRRHLQLDETQETSKRADLKAGAIMLASNLRANIGKRIGAVPGVEVGDIFYFRMELCIIGLHAPSMGGIDYMNKFGDEDDSVAICIVAAGVYENDDDDTDTLVYSGSGGISRNSEEKQDQKLERGNLALERSLSRKNVIRVVRGYKDPACLTGKVYIYDGLYKIHESWKERTKTGINCFKYKLQREPGQPDAVAIWKMCQRWVENPAARGKVLHPDLSSGAENLPVCLINDVNSEKGPGHFNYITQVKYLKPLRSMKPFQGCRCTSVCLPGDTSCDCAQHNGGDLPYSSSGLLVCRKLMVYECGESCRCSINCRNRVAQKGVRIHLEVFRTTNRGWGLRSWDPIRAGSFICEYVGEVVDDTKVNLDGEDDYLFRTVCPGEKTLKWNYGPELIGEHSINISADTFEPLPIKISAMKMGNVARFMNHSCNPNTFWQPVQFDHGEDGYPHIMFFALKHIPPMTELTYDYGDIGCESRGVGSRAKNCLCGSSNCRGFFS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.182140 | 0.283076 | 0.800900 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0811300 | RBH | 0.843271 | 0.822008 | 3.061503 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g59620 | RBH | 0.566004 | 0.550029 | 0.782204 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0811300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0037620 | RBH | 1.008944 | 3.554537 | 3.475022 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0021740 | SBH | 0.666432 | 6.511556 | 5.583806 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0037490 | RBH | 0.566437 | 2.844985 | 2.935454 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0036880 | RBH | 0.076568 | 0.168646 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0036590 | RBH | 3.971976 | 5.177552 | 5.379802 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0570500 | RBH | 3.551755 | 8.4713705 | 11.5428225 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0036280 | RBH | 0.284196 | 0.100637 | 0.775224 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0566800 | RBH | 3.371492 | 5.980934 | 11.7347725 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0036480 | RBH | 0.069109 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0036540 | RBH | 0.329736 | 1.435023 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0036770 | RBH | 3.969110 | 10.624495 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0021720 | RBH | 2.145642 | 2.108440 | 3.529868 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0036610 | RBH | 0.198368 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G037120 | RBH | 0.255162 | 0.892043 | 0.795024 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0036810 | RBH | 0.797663 | 3.965002 | 3.063202 |
