Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_01g0017940 | OGI:01056340 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr01:18487088-18487938 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ttaagcgagatccgaagctacaatttcgcctctcccatcaataggtttagccagagcatttataacacgacccaagtaagcctcgctcacgggtatctgagcaattcttcctgttgcttttacaaaactgccctcttgtatcatcaaccatcgcccattaatacaatcccaacatttttggattccaaattcagagcaataccctagtcccttctgcaaattcgactaattcgcctgacattatttcaccaagacctataatacgagcaatcccatcccccacttgaactacgcgaccgatattctcaatccctacttttctattatattgttcaatacgttcgcggagaattttatgaatttcgtcgactcgaagggttgccattagtgtttctttactatttttttcggaagcaaggggaaaaataatgcctaaattctaaaggaaagtagaagttcaaggcctaattaatttaactcttccattccatggCcccgagaatgctaatattagcacgaatcgtacggaaatgtaactcggtattcaaacaactattcagagttcctagagcttcttgtacggcttgttggaaaacccgttgtcggacctgattcatcgccctttgtttttcaaaataaagggtttcgtttttagacttttctaattgttccaaactaatagaagtggcattaatcaaatttgctttttctcgttctatctcagagtattcattcattcgatactcatccgcttctagttcgactttctgtaatcgaattcgagctttttcgagctgctcaatggttcctctatgcaattcTtccgaatttcgaatagtactcaaggtcct
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| CDS seq | atgaatgaatactctgagatagaacgagaaaaagcaaatttgattaatgccacttctattagtttggaacaattagaaaagtctaaaaacgaaaccctttattttgaaaaacaaagggcgatgaatcaggtccgacaacgggttttccaacaagccgtacaagaagctctaggaactctgaatagttgtttgaataccgagttacatttccgtacgattcgtgctaatattagcattctcgggGccatggaatggaagagaagaattgctcagatacccgtgagcgaggcttacttgggtcgtgttataaatgctctggctaaacctattgatgggagaggcgaaattgtagcttcggatctcgcttaa |
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| Protein seq | MNEYSEIEREKANLINATSISLEQLEKSKNETLYFEKQRAMNQVRQRVFQQAVQEALGTLNSCLNTELHFRTIRANISILGAMEWKRRIAQIPVSEAYLGRVINALAKPIDGRGEIVASDLA |
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| Function | ATP synthase subunit b, chloroplastic [UniProtKB/Swiss-Prot:A1EA04] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_01g0017940 | OsLiXu_01g0017940.01 | Chr01 | 18487088 | 18487938 | - | NAM | ||
| CDS seq | atgaatgaatactctgagatagaacgagaaaaagcaaatttgattaatgccacttctattagtttggaacaattagaaaagtctaaaaacgaaaccctttattttgaaaaacaaagggcgatgaatcaggtccgacaacgggttttccaacaagccgtacaagaagctctaggaactctgaatagttgtttgaataccgagttacatttccgtacgattcgtgctaatattagcattctcgggGccatggaatggaagagaagaattgctcagatacccgtgagcgaggcttacttgggtcgtgttataaatgctctggctaaacctattgatgggagaggcgaaattgtagcttcggatctcgcttaa
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| Protein seq | MNEYSEIEREKANLINATSISLEQLEKSKNETLYFEKQRAMNQVRQRVFQQAVQEALGTLNSCLNTELHFRTIRANISILGAMEWKRRIAQIPVSEAYLGRVINALAKPIDGRGEIVASDLA |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_01g0017940 | OsLiXu_01g0017940.02 | Chr01 | 18487496 | 18487651 | - | IsoSeq | ||
| CDS seq | atggaagagtta |
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| Protein seq | MEEL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 4.162531 | 0.947513 | 2.215096 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g08464 | SBH | 0.357509 | 0.035400 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0013700 | RBH | 65.877716 | 0.000000 | 82.871605 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0018220 | SBH | 726.383789 | 85.930038 | 597.339661 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0013610 | RBH | 636.464111 | 107.635475 | 761.092834 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0013900 | RBH | 0.000000 | 0.001277 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0017970 | RBH | 1652.038818 | 120.820091 | 1315.958740 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0300300 | SBH | 4539.07959 | 422.9936675 | 612.403595 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0017990 | SBH | 747.249451 | 6.285062 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0017940 | RBH | 218.670197 | 62.714031 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0018190 | SBH | 4714.895508 | 360.585022 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0004670 | SBH | 31.388939 | 0.0 | 12.428169 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0017850 | SBH | 436.983917 | 80.464249 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G017790 | SBH | 286.852173 | 78.991211 | 447.335388 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0018050 | RBH | 17.204542 | 0.000000 | 23.589916 |
