Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_09g0019270 | OGI:09064520 | 15/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr09:23464655-23467169 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | taactgatggtcccatgaatgaacaaaataaacgattcttcaagtagacagatcaatctccagacatactaccagttaggactccttagtccttaccaatctgatgaatcgactgtttccaagcttgagtttcccgcaaatcacagtactgttgagacatcacagcgaaggcagcgactactgagggttttagatgtaatgctactcacctaactatctgtactgatgatggttgagtggactgtccagtgaaccatgaaaccatgatatctgcagaacacctgaaactgagcaaattagcaaagccagatgaatgttgaaaacgacaaataattacttagcctttattgcattttctttgaaagtacaccatgcaactcaatatgtctacaaattcttttttcaaaataaacctggatgcattttcccggaatgtgtttgttcagcaagactcaccttcaggcttcaacagtcaagctacttgatggtgaacgtttgcctgagaagacatagaccattcacagtaccaatcttgattcggtatagtgctttactctacatcataaggttctaattgattctaggaggtctttagaatagattttctttcttccacatttagttggtctggtggcacagccaaggcatttggaaagaccaaatgatgtggcaacctatcatcccctacatacatgtcgtctgagctctcatgtccaatgccttcagctccagattcatgaatgttactgtttgtttcaattgaactaacacccatattctttttcatgccccactctctcattagcttcctgagccttttcatgtcttcccactggtgagtttcataaagcatgtttgaaattaggacgaacaggcctccactcattccctccagctcaagtaattgtttgattacttgcttgccgatctgtatatgtccatggatcctgcaggctcctagtaacgcaccccaaaccacaacatcaggcctcattggcatgtctttgatcagatcaacagcctttgctagctggccaccacggccaagcagatcaaccatgcaggcataatgctcaacgccaggcttaacattgtaaacatgtctcatagcttgaaagtaatattgtccagcttccagtaggcccccatggttacatgcagaaagaagagcaacaaaggttatctcatcaggggggaaggcatcagataccatagatctgaagaacattagtgcatcctgtgcacgtccatgcatcgctagcgccccaataatcgcattccatgagataacatttttactaggcatttcactgaacaagcttatggcagtgtctacctgaccacaccttgcatacatgtcaagaagtgaattaaatagagcaacacctggattatggaagttatctctgatacagtcatgtatcatctttccagaagccaaatcgccaagttgcccacaggcagagaggacagcagccaaggtaaactcgtctggagcgaggcctagcaatttcatacggttataaagatccagcgcttcatggaatcggccaccttgaacatagcaagagatcatggcattccaagatattatgctcttctctggtatctgttcaaaccaatctcttgcggcatcaatagacgcacgtttggccagagcacaaagcatagatgtccatgaaacagcattcttgaagggcatcatgtcaaagcatgtatgagccatcaacaaatccccacacttaccatacatgtccaccaaagcattggcaaggatcaaatcaatccgacatcctctaaccagcaaatgagagtgcacaagcttaccaaattcaagatttccctccgctgagcaggcaaaaagcaggctgaccagcgtgaactcatcagccaagagtccctgacgtctcatcccctcaaacaaggagcacgcctccctagtatttccagcctgcgcatatccgttgatcattgagttccatgacaccacattcctgtccaccatctcatcaaagaaccggcgagaatcccccagtgacccggccgaagcataagaatgcagaagagcattccccacaaacacctgccccacaaatcccagcttaacaaccacgccatgggtgaccatcacatgctcccacgcctgtaccctcgcgcacgccttgaggaggaatggcagcgtgaactcgttcggcaggatgcctcgccggatcatgccacgaagaagaggcagcgcttcttgggggcaatggctattgcagtaggctctgataagactgttgtaaacgaacctgtccggatcaggaattctgtcgaacagttggcgggcataccacaccccaccaccagccggtagcgcgcagtaggacgcgaggatctgagaggtgacgtcgtccacgccgtggacgacgaggtgggcgtggagctggttgagacggtgcacggagccgcaccgccgcaggagctcccgaacatggcgggcggaggaggcgccgccggccgatggcgcgagcat
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| CDS seq | atgctcgcgccatcggccggcggcgcctcctccgcccgccatgttcgggagctcctgcggcggtgcggctccgtgcaccgtctcaaccagctccacgcccacctcgtcgtccacggcgtggacgacgtcacctctcagatcctcgcgtcctactgcgcgctaccggctggtggtggggtgtggtatgcccgccaactgttcgacagaattcctgatccggacaggttcgtttacaacagtcttatcagagcctactgcaatagccattgcccccaagaagcgctgcctcttcttcgtggcatgatccggcgaggcatcctgccgaacgagttcacgctgccattcctcctcaaggcgtgcgcgagggtacaggcgtgggagcatgtgatggtcacccatggcgtggttgttaagctgggatttgtggggcaggtgtttgtggggaatgctcttctgcattcttatgcttcggccgggtcactgggggattctcgccggttctttgatgagatggtggacaggaatgtggtgtcatggaactcaatgatcaacggatatgcgcaggctggaaatactagggaggcgtgctccttgtttgaggggatgagacgtcagggactcttggctgatgagttcacgctggtcagcctgctttttgcctgctcagcggagggaaatcttgaatttggtaagcttgtgcactctcatttgctggttagaggatgtcggattgatttgatccttgccaatgctttggtggacatgtatggtaagtgtggggatttgttgatggctcatacatgctttgacatgatgcccttcaagaatgctgtttcatggacatctatgctttgtgctctggccaaacgtgcgtctattgatgccgcaagagattggtttgaacagataccagagaagagcataatatcttggaatgccatgatctcttgctatgttcaaggtggccgattccatgaagcgctggatctttataaccgtatgaaattgctaggcctcgctccagacgagtttaccttggctgctgtcctctctgcctgtgggcaacttggcgatttggcttctggaaagatgatacatgactgtatcagagataacttccataatccaggtgttgctctatttaattcacttcttgacatgtatgcaaggtgtggtcaggtagacactgccataagcttgttcagtgaaatgcctagtaaaaatgttatctcatggaatgcgattattggggcgctagcgatgcatggacgtgcacaggatgcactaatgttcttcagatctatggtatctgatgccttcccccctgatgagataacctttgttgctcttctttctgcatgtaaccatgggggcctactggaagctggacaatattactttcaagctatgagacatgtttacaatgttaagcctggcgttgagcattatgcctgcatggttgatctgcttggccgtggtggccagctagcaaaggctgttgatctgatcaaagacatgccaatgaggcctgatgttgtggtttggggtgcgttactaggagcctgcaggatccatggacatatacagatcggcaagcaagtaatcaaacaattacttgagctggagggaatgagtggaggcctgttcgtcctaatttcaaacatgctttatgaaactcaccagtgggaagacatgaaaaggctcaggaagctaatgagagagtggggcatgaaaaagaatatgggtgttagttcaattgaaacaaacagtaacattcatgaatctggagctgaaggcattggacatgagagctcagacgacatgtgttctgcagatatcatggtttcatggttcactggacagtccactcaaccatcatcagtacagatagttaggtga
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| Protein seq | MLAPSAGGASSARHVRELLRRCGSVHRLNQLHAHLVVHGVDDVTSQILASYCALPAGGGVWYARQLFDRIPDPDRFVYNSLIRAYCNSHCPQEALPLLRGMIRRGILPNEFTLPFLLKACARVQAWEHVMVTHGVVVKLGFVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDRNVVSWNSMINGYAQAGNTREACSLFEGMRRQGLLADEFTLVSLLFACSAEGNLEFGKLVHSHLLVRGCRIDLILANALVDMYGKCGDLLMAHTCFDMMPFKNAVSWTSMLCALAKRASIDAARDWFEQIPEKSIISWNAMISCYVQGGRFHEALDLYNRMKLLGLAPDEFTLAAVLSACGQLGDLASGKMIHDCIRDNFHNPGVALFNSLLDMYARCGQVDTAISLFSEMPSKNVISWNAIIGALAMHGRAQDALMFFRSMVSDAFPPDEITFVALLSACNHGGLLEAGQYYFQAMRHVYNVKPGVEHYACMVDLLGRGGQLAKAVDLIKDMPMRPDVVVWGALLGACRIHGHIQIGKQVIKQLLELEGMSGGLFVLISNMLYETHQWEDMKRLRKLMREWGMKKNMGVSSIETNSNIHESGAEGIGHESSDDMCSADIMVSWFTGQSTQPSSVQIVR |
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| Function | Pentatricopeptide repeat-containing protein At2g22410, mitochondrial [UniProtKB/Swiss-Prot:Q9SJZ3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_09g0019270 | OsLaMu_09g0019270.01 | Chr09 | 23464655 | 23467169 | - | NAM | ||
| CDS seq | atgctcgcgccatcggccggcggcgcctcctccgcccgccatgttcgggagctcctgcggcggtgcggctccgtgcaccgtctcaaccagctccacgcccacctcgtcgtccacggcgtggacgacgtcacctctcagatcctcgcgtcctactgcgcgctaccggctggtggtggggtgtggtatgcccgccaactgttcgacagaattcctgatccggacaggttcgtttacaacagtcttatcagagcctactgcaatagccattgcccccaagaagcgctgcctcttcttcgtggcatgatccggcgaggcatcctgccgaacgagttcacgctgccattcctcctcaaggcgtgcgcgagggtacaggcgtgggagcatgtgatggtcacccatggcgtggttgttaagctgggatttgtggggcaggtgtttgtggggaatgctcttctgcattcttatgcttcggccgggtcactgggggattctcgccggttctttgatgagatggtggacaggaatgtggtgtcatggaactcaatgatcaacggatatgcgcaggctggaaatactagggaggcgtgctccttgtttgaggggatgagacgtcagggactcttggctgatgagttcacgctggtcagcctgctttttgcctgctcagcggagggaaatcttgaatttggtaagcttgtgcactctcatttgctggttagaggatgtcggattgatttgatccttgccaatgctttggtggacatgtatggtaagtgtggggatttgttgatggctcatacatgctttgacatgatgcccttcaagaatgctgtttcatggacatctatgctttgtgctctggccaaacgtgcgtctattgatgccgcaagagattggtttgaacagataccagagaagagcataatatcttggaatgccatgatctcttgctatgttcaaggtggccgattccatgaagcgctggatctttataaccgtatgaaattgctaggcctcgctccagacgagtttaccttggctgctgtcctctctgcctgtgggcaacttggcgatttggcttctggaaagatgatacatgactgtatcagagataacttccataatccaggtgttgctctatttaattcacttcttgacatgtatgcaaggtgtggtcaggtagacactgccataagcttgttcagtgaaatgcctagtaaaaatgttatctcatggaatgcgattattggggcgctagcgatgcatggacgtgcacaggatgcactaatgttcttcagatctatggtatctgatgccttcccccctgatgagataacctttgttgctcttctttctgcatgtaaccatgggggcctactggaagctggacaatattactttcaagctatgagacatgtttacaatgttaagcctggcgttgagcattatgcctgcatggttgatctgcttggccgtggtggccagctagcaaaggctgttgatctgatcaaagacatgccaatgaggcctgatgttgtggtttggggtgcgttactaggagcctgcaggatccatggacatatacagatcggcaagcaagtaatcaaacaattacttgagctggagggaatgagtggaggcctgttcgtcctaatttcaaacatgctttatgaaactcaccagtgggaagacatgaaaaggctcaggaagctaatgagagagtggggcatgaaaaagaatatgggtgttagttcaattgaaacaaacagtaacattcatgaatctggagctgaaggcattggacatgagagctcagacgacatgtgttctgcagatatcatggtttcatggttcactggacagtccactcaaccatcatcagtacagatagttaggtga
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| Protein seq | MLAPSAGGASSARHVRELLRRCGSVHRLNQLHAHLVVHGVDDVTSQILASYCALPAGGGVWYARQLFDRIPDPDRFVYNSLIRAYCNSHCPQEALPLLRGMIRRGILPNEFTLPFLLKACARVQAWEHVMVTHGVVVKLGFVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDRNVVSWNSMINGYAQAGNTREACSLFEGMRRQGLLADEFTLVSLLFACSAEGNLEFGKLVHSHLLVRGCRIDLILANALVDMYGKCGDLLMAHTCFDMMPFKNAVSWTSMLCALAKRASIDAARDWFEQIPEKSIISWNAMISCYVQGGRFHEALDLYNRMKLLGLAPDEFTLAAVLSACGQLGDLASGKMIHDCIRDNFHNPGVALFNSLLDMYARCGQVDTAISLFSEMPSKNVISWNAIIGALAMHGRAQDALMFFRSMVSDAFPPDEITFVALLSACNHGGLLEAGQYYFQAMRHVYNVKPGVEHYACMVDLLGRGGQLAKAVDLIKDMPMRPDVVVWGALLGACRIHGHIQIGKQVIKQLLELEGMSGGLFVLISNMLYETHQWEDMKRLRKLMREWGMKKNMGVSSIETNSNIHESGAEGIGHESSDDMCSADIMVSWFTGQSTQPSSVQIVR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.648153 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0555400 | RBH | 0.246159 | 0.327009 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g38310 | RBH | 0.166737 | 0.219304 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0555400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0019220 | RBH | 0.000000 | 0.000000 | 0.476489 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0019310 | RBH | 0.000000 | 0.000000 | 0.297972 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0019510 | RBH | 0.000000 | 0.000000 | 0.472027 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0019280 | RBH | 0.0 | 0.028035 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0019500 | RBH | 0.473360 | 4.257553 | 2.929155 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0372800 | RBH | 0.435727 | 1.5794985 | 1.653019 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0019280 | RBH | 0.0 | 0.000000 | 0.045184 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0231900 | SBH | 0.507407 | 1.003224 | 2.4105375 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0019400 | RBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0019130 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0019100 | RBH | 0.779755 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0019120 | RBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G019660 | RBH | 0.074517 | 0.000000 | 0.168651 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0019490 | RBH | 0.176410 | 0.0 | 0.000000 |
