Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_08g0016700 | OGI:08061770 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr08:22168363-22170325 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggcatcgcatctcacgcgcgccctcctctcctccccgccgtcctccgccgccgccgccgccaccgcctctgccgccgccgcgctcctatcctccacgtcgccgctccccgcggcgcgcttcctccagctccacgcgcacctcctccgcacgggcctcctcctcctcccactcgccccgaccgcggcctccgccttcctctccctcgccgccgcctccctcccgtcgcaccgggcgctgccggtcctcctccaccacctcgccctcgccccggagaccctcccctccacattccgcctcaacgccatcctccgctccctccgcggccccgacgcgctccgcttcctccgccgcgcccgcgagctcggccgccgcgggaacgccttctccctgtccatcgtcctcggccactgccgcgccctcgcccacgcgcgccagcttcacgccaacgtcgtcgccgaggggcactccccggacgccctcctggccacctcgctggtgagttcctatgctgcctgcggcgacggggacagcgctcgcaagatgttcgatgaaatgccggtcagggacactatcgcgtggaacgttctcatcacttgttataccaggaaccggcggacgaaggatgctctcaagcttttcgatgcgatgaggggtggggagaatggggcagaaccagacgatgtcacctgcattctccttctccaagcgtgcacgagcttgggtgcgctcgatttcggggagaaggtctgggagtatgcggtggatcatggatatgggggtgagttgaaggtgcgtaactcgttgattacaatgtacacaaagtgcggctgtgtggacaaggcataccaggtgttttgtgagactcctaagaagagtgtggtcacatggagtgcaatgatctcgggtttggcatctaatggttttgggaaggatgctatatctgcatttgaggagatgggtagatcaggcgttgctcctgatgaacagacatttactggtgtgctctcagcgtgtagtcatagcgggctggttgatgaggggttcaagttttttgatattatgtgttacgaatatcagttaaagccaaatgttcatcattatggatgcatggtagacctcatgggccgtgctggcttgcttgatcaggcatatgaactggtggtaaaagacatgagggtagcaccagatgcaacgatttggcgaacccttcttggtgcatgcagaattcatggtcatattgaccttggagagcgtgtaatcaaccatctaattgaactgaaagcgcaacaagctggggattatgttctattgcttaatacttatgcagcagttgaagattggggaaaggtagcagaggtcaggaagttgatgaaggagaaagggatccaaactactcctggctgcacgacagtagaactgaatggcgagatccatgaatttattgcagctgatgcttcacatccaagaaaggcagagatttatgaaaagcttgatgagataaacaaacatcttagaatagctggttatgttcctaacgtgtcgtcggagttgcatgatttggattctgaggggaaggaatgcgccctcgcatatcacagtgaaaagctagcaattgcttttgctcttcttgtgacaccacagcatagaccaataaggcttgctaagaatcttcgtgtttgtgtagactgccacaatttcacaaaggtattctctggtgtatatcatcgcttagtgattgtcagagacagaacccgattccatcatttcaaggaattccagtgttcgtgtaatgattattggtagtccaccatttctttcctgtgcatttatgctgattacaaaggatataaagtgtttgcacacagtgaatatcagagcttcgttgagtgctggaattgatgatattggcatgagatgcaagattacatcagttgtgtatgcagtcagacatgtcacatga
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| CDS seq | atggcatcgcatctcacgcgcgccctcctctcctccccgccgtcctccgccgccgccgccgccaccgcctctgccgccgccgcgctcctatcctccacgtcgccgctccccgcggcgcgcttcctccagctccacgcgcacctcctccgcacgggcctcctcctcctcccactcgccccgaccgcggcctccgccttcctctccctcgccgccgcctccctcccgtcgcaccgggcgctgccggtcctcctccaccacctcgccctcgccccggagaccctcccctccacattccgcctcaacgccatcctccgctccctccgcggccccgacgcgctccgcttcctccgccgcgcccgcgagctcggccgccgcgggaacgccttctccctgtccatcgtcctcggccactgccgcgccctcgcccacgcgcgccagcttcacgccaacgtcgtcgccgaggggcactccccggacgccctcctggccacctcgctggtgagttcctatgctgcctgcggcgacggggacagcgctcgcaagatgttcgatgaaatgccggtcagggacactatcgcgtggaacgttctcatcacttgttataccaggaaccggcggacgaaggatgctctcaagcttttcgatgcgatgaggggtggggagaatggggcagaaccagacgatgtcacctgcattctccttctccaagcgtgcacgagcttgggtgcgctcgatttcggggagaaggtctgggagtatgcggtggatcatggatatgggggtgagttgaaggtgcgtaactcgttgattacaatgtacacaaagtgcggctgtgtggacaaggcataccaggtgttttgtgagactcctaagaagagtgtggtcacatggagtgcaatgatctcgggtttggcatctaatggttttgggaaggatgctatatctgcatttgaggagatgggtagatcaggcgttgctcctgatgaacagacatttactggtgtgctctcagcgtgtagtcatagcgggctggttgatgaggggttcaagttttttgatattatgtgttacgaatatcagttaaagccaaatgttcatcattatggatgcatggtagacctcatgggccgtgctggcttgcttgatcaggcatatgaactggtggtaaaagacatgagggtagcaccagatgcaacgatttggcgaacccttcttggtgcatgcagaattcatggtcatattgaccttggagagcgtgtaatcaaccatctaattgaactgaaagcgcaacaagctggggattatgttctattgcttaatacttatgcagcagttgaagattggggaaaggtagcagaggtcaggaagttgatgaaggagaaagggatccaaactactcctggctgcacgacagtagaactgaatggcgagatccatgaatttattgcagctgatgcttcacatccaagaaaggcagagatttatgaaaagcttgatgagataaacaaacatcttagaatagctgtgaatatcagagcttcgttgagtgctggaattgatgatattggcatgagatgcaagattacatcagttgtgtatgcagtcagacatgtcacatga
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| Protein seq | MASHLTRALLSSPPSSAAAAATASAAAALLSSTSPLPAARFLQLHAHLLRTGLLLLPLAPTAASAFLSLAAASLPSHRALPVLLHHLALAPETLPSTFRLNAILRSLRGPDALRFLRRARELGRRGNAFSLSIVLGHCRALAHARQLHANVVAEGHSPDALLATSLVSSYAACGDGDSARKMFDEMPVRDTIAWNVLITCYTRNRRTKDALKLFDAMRGGENGAEPDDVTCILLLQACTSLGALDFGEKVWEYAVDHGYGGELKVRNSLITMYTKCGCVDKAYQVFCETPKKSVVTWSAMISGLASNGFGKDAISAFEEMGRSGVAPDEQTFTGVLSACSHSGLVDEGFKFFDIMCYEYQLKPNVHHYGCMVDLMGRAGLLDQAYELVVKDMRVAPDATIWRTLLGACRIHGHIDLGERVINHLIELKAQQAGDYVLLLNTYAAVEDWGKVAEVRKLMKEKGIQTTPGCTTVELNGEIHEFIAADASHPRKAEIYEKLDEINKHLRIAVNIRASLSAGIDDIGMRCKITSVVYAVRHVT |
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| Function | Pentatricopeptide repeat-containing protein At3g47530 [UniProtKB/Swiss-Prot:Q9SN85] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_08g0016700 | OsLaMu_08g0016700.01 | Chr08 | 22168363 | 22170325 | + | NAM | ||
| CDS seq | atggcatcgcatctcacgcgcgccctcctctcctccccgccgtcctccgccgccgccgccgccaccgcctctgccgccgccgcgctcctatcctccacgtcgccgctccccgcggcgcgcttcctccagctccacgcgcacctcctccgcacgggcctcctcctcctcccactcgccccgaccgcggcctccgccttcctctccctcgccgccgcctccctcccgtcgcaccgggcgctgccggtcctcctccaccacctcgccctcgccccggagaccctcccctccacattccgcctcaacgccatcctccgctccctccgcggccccgacgcgctccgcttcctccgccgcgcccgcgagctcggccgccgcgggaacgccttctccctgtccatcgtcctcggccactgccgcgccctcgcccacgcgcgccagcttcacgccaacgtcgtcgccgaggggcactccccggacgccctcctggccacctcgctggtgagttcctatgctgcctgcggcgacggggacagcgctcgcaagatgttcgatgaaatgccggtcagggacactatcgcgtggaacgttctcatcacttgttataccaggaaccggcggacgaaggatgctctcaagcttttcgatgcgatgaggggtggggagaatggggcagaaccagacgatgtcacctgcattctccttctccaagcgtgcacgagcttgggtgcgctcgatttcggggagaaggtctgggagtatgcggtggatcatggatatgggggtgagttgaaggtgcgtaactcgttgattacaatgtacacaaagtgcggctgtgtggacaaggcataccaggtgttttgtgagactcctaagaagagtgtggtcacatggagtgcaatgatctcgggtttggcatctaatggttttgggaaggatgctatatctgcatttgaggagatgggtagatcaggcgttgctcctgatgaacagacatttactggtgtgctctcagcgtgtagtcatagcgggctggttgatgaggggttcaagttttttgatattatgtgttacgaatatcagttaaagccaaatgttcatcattatggatgcatggtagacctcatgggccgtgctggcttgcttgatcaggcatatgaactggtggtaaaagacatgagggtagcaccagatgcaacgatttggcgaacccttcttggtgcatgcagaattcatggtcatattgaccttggagagcgtgtaatcaaccatctaattgaactgaaagcgcaacaagctggggattatgttctattgcttaatacttatgcagcagttgaagattggggaaaggtagcagaggtcaggaagttgatgaaggagaaagggatccaaactactcctggctgcacgacagtagaactgaatggcgagatccatgaatttattgcagctgatgcttcacatccaagaaaggcagagatttatgaaaagcttgatgagataaacaaacatcttagaatagctgtgaatatcagagcttcgttgagtgctggaattgatgatattggcatgagatgcaagattacatcagttgtgtatgcagtcagacatgtcacatga
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| Protein seq | MASHLTRALLSSPPSSAAAAATASAAAALLSSTSPLPAARFLQLHAHLLRTGLLLLPLAPTAASAFLSLAAASLPSHRALPVLLHHLALAPETLPSTFRLNAILRSLRGPDALRFLRRARELGRRGNAFSLSIVLGHCRALAHARQLHANVVAEGHSPDALLATSLVSSYAACGDGDSARKMFDEMPVRDTIAWNVLITCYTRNRRTKDALKLFDAMRGGENGAEPDDVTCILLLQACTSLGALDFGEKVWEYAVDHGYGGELKVRNSLITMYTKCGCVDKAYQVFCETPKKSVVTWSAMISGLASNGFGKDAISAFEEMGRSGVAPDEQTFTGVLSACSHSGLVDEGFKFFDIMCYEYQLKPNVHHYGCMVDLMGRAGLLDQAYELVVKDMRVAPDATIWRTLLGACRIHGHIDLGERVINHLIELKAQQAGDYVLLLNTYAAVEDWGKVAEVRKLMKEKGIQTTPGCTTVELNGEIHEFIAADASHPRKAEIYEKLDEINKHLRIAVNIRASLSAGIDDIGMRCKITSVVYAVRHVT
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0434000 | RBH | 0.530718 | 0.147540 | 0.512817 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g33700 | RBH | 0.358899 | 0.099233 | 0.132009 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0434000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0017150 | RBH | 0.117269 | 1.619838 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0017020 | RBH | 0.0 | 0.000000 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0016970 | RBH | 0.0 | 0.0 | 1.421465 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0017290 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0017140 | RBH | 0.0 | 0.000000 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0334600 | RBH | 0.500151 | 1.1791765 | 0.456735 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0017030 | RBH | 0.000000 | 0.003529 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0467900 | SBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0016400 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0016670 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0016480 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0017300 | RBH | 0.113992 | 0.000000 | 0.142369 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0009990 | RBH | 0.0 | 0.898685 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G016860 | RBH | 0.0 | 0.254429 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0016960 | RBH | 0.000000 | 0.0 | 0.0 |
