Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_08g0013270 | OGI:08049820 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr08:17980185-17985385 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctaaatgggcaaactaaccttcacattactgaaagtattcgatgcggaaaatccaatggatatggggtaaaacattgatggatcagctggaggaacaacaaattccatggatccactgaaatggttcacaaaaataagagctagtaataagagcataaactacaagataaaagaacaatgataattcggaattcacagatttcatgtacctgcggtttgattgatcaataaggataatagaccattccaaaaccgagtttcttgaatcatacctgtagggcaaagaaagggaaaataccagaaggcatgagaaagagagcatatgcacacaagctcaaggatacaaaagggacagagtctggatgagtttgtaatagcattccagacaatgcaacgtgaataatagaatcaaatagttaagtgccattccgaggagtcacatccattaacacttcgaatctaccgtaaacaataaaaacctagaatactagtaaccgttagtaatgtttcatataaaaacttaatatgatattgccatgcagtcgtgtgccccccccccccccccccccttaaatatctgccaaaaaggcaacatgatgcaagaacagcagacattatgcattggcctggacatgcaaaggaaatctttcaacaaaaatAaaaaaaaattcacaacaaaatttcgcagtagttacaaatacataagagaacggtagaggaacaggaatattacttccactctccgtctatctgtctaacacatggagcctcccgaagtgcaggaagaggtatagatatgatgacactgtgcaggtcaaacatctcagaagcttcatactcgatgttgacgtaggtttcatttcctaatattgatggccagcaattgactatgcaaagcaaacaagttattagaactccaaattactagataccagagaagagagagaagtgaaagttattagaactccaaattactagataccagagaagagagagaagtgaatgtgcacctgatagaggtaaagatgactcattcatcccctgtattctccatttcactagaggagtttcattttgaccacttgggaaaggcctgataggatcttttgCccccagaatttgctgactgttaaacaagtccttgttgatattggggtgtgttttgaaactaagtccaggaatatcttggctttctatctacaagatagcaagtattaactagtgaataaaccaactccaaacaatagtaagaaagagatttggttacccaaaacaatgtgcagtaaggttgcttgttagcaataaatgcatggcgttagaaacataaatcattgcgaatgttacagtgaagatcatcaccacatttccatggagtaagAaaaaaaatctgtgcacaatctattttatgtgaaagggcatcatagtagaaggaaagcattatatttattaaaacaatatcactatatcttcacaccgaaaaaagaaaggaaaatgttttttatgttgttttattctgtttcaaagtacaaatttcccatatatgacaacaatacaagaataatgttaataaatataaaaaaattacctgcaacaggattaatccatctgcatcattaaggacctgcagagcaagtgttccttgaacatcaaaattattaacaccaccatctcttttcactgcaacattgagtttctcttcaacagccactgtgacaggatcactcggtggtagaggcgatgaccttgactgaagagaacatggttgaaaatcttccataatgacttcaccttcagccttcaatgattctaagaactggttcgtcttctttgtatttcctaatttcattccaatgcctttaccagcacctgtagtacctccagatgtacgacctgcaggtaggttgctatttagaacaaaataacataacatcttgtaaattcttcttgcagttaaagaaaagaaaatatagttgaccaaaatgtcgagaaggacttgacAaaaaaatattctggataacaggactgagaagaaaacataaattttaatcaatcagcagataatctacacagataaaagaaaggctaggttcaattaagacagcattgtggcaaccaccgacttgtacaataaatagctttgcatcacagatatagcatgcaagttagctctggtatgtttgctgcatgacttatttttattctgaaacagtacaattttacgtttagtaactatttaaattatattttacagaacaccacagacgttaccatatttaagggtttgaagtctaaaaggctagctgaatgcatgctccttctggtcttaacaaatcttgttttggactacatgtcttgaaaatacaactttactcactaatttcactgcaatatatttatgattctcatgcatcgaacctaaatatcgaaaggattttgatgttcaaagtgttaaacattgacataaaccatgtccaaaccatctggtctttcaagactgaaggaatcatctcagatatatataagaaaaaccaggataaaatagaagaagagaaaatataaataaataaaattgttaccaggcaataggaatggacacaatatgcatttctactaatactgcatgtagtatttgttaaaatagaccgaaaaataatacctttgggcctgctagtaaatgtgtctgtatctgtgttcaatccacctaatccagaaccacttccaaatccagtacaactaatgctcatgtcattgaaagatttttcaatcacctggggacctaatattgatgagtatcctcctttgttatgtttgcctttctccatctgcataaacaccaacaatttacgattgaaagctacacaataacaagtaatgtatagaaaggtcattgtaaccaataatgtagtatgattccaagggatatgtttcctgtatgatatttctctaattttattttgtcttgtttgacctaatttctcctaaggctatcatacagtctagctagtagaaattatgttagtactaaatttatcatatattcttacaggttctaaagcccaacaagctagtctagaaaaaacataagtctatccagacagataaactgtaactcaagtaatcatcaaagattgaaggaactgatagtaactgtaaccgaagtaggccaagataaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagaggactaaatagaagtaacagctctattttgcctactagctaaatagaagtcatatttgtctgcAaaaaaagagtagggtgcaccctggttttctcaatctcaataactttcttcttcataaaatctttggtttccttgattttctcttgcatcatctgcttgtactctatctcttcaacactatccatctcacaatattctttgacctgttgaactgttactttttccttatttccaaaagaaatggcttcgtcaaaagcaaatataagctcaaaagctgttttacagacaccatcgtcatcgagagaggggcagtattcaggcacctttacattgttaaggttaaggagaccatgactgtggatagttgccaacaaataggaaacaacaaaagcataacaacattcataaaaattaacggataaatcaagctctcgacatatgacacccttagttgtaagaggtgaatgcagatcttcatcaaacaagaacagtattaatcatctgccttctatgtaatttcctttcctaggtatcagtctcagtttgtgggtgtcattataatcgacatttcattcttcaagaaaataatgttcaataacgttttcaattattctgacaatgttctttggttttcatttaataatccctccagccattaatatgtgatgcttgacactaactttagtgttaaaaacgaaattagtgttaagcatcatatagtagtgacctgagggagtaagaacataagattttagtaaagtagattcctaaaatcagaaggctaaagatacaagaaaaggatacaagcttggagagtagcctcaacgtgtcgagatcctcaagaatattactttgtttgtttgtgataactacaagatataagccttcaataggttggtaaacgtaacggacattttcagtctcaatgtaagtgtgctgctttccatttccaacaagtttagggaatgctgcaagtaatccttcaatccttatgcgagtcatgtcaacatactgtctagaaacaagtgctgcaattgagaaggaacaaccaaaacatcattcagcctaggaacctcaaaagttaccctcaaggatcatgaaacaaatagtaattgacagctataaaatccttacagttgttacttgttaaacacaaaacagttttggtattaggtcaaccaattgactgtagaatttagaagtcttaacgaacaggcagtacggtaacagcagcaaagctctccgatgctttttcagcaattagtagcagaatgctattgctttatgactccaattggcatgcggtgagccggtgacaaacagtagacaattacagatacaactaataattttattaaagaaaaccgaaatgatggaagcataccttttcctgactttgagatgatagaagcagcaagaaccacctgaagatacacaaaaagtaatcagttcgtcacaacaacaaaccagatagatatcggagctagatgcaactcagttttaacagatcaagtgaggatcacaagattgatgggcgtggcagaagcaagaattacaatcagccataccatttttaataactttgtcggtccctgagctatttacagcccaagtccacaagttacacacctgcatagatgaaaagaaatattattcactcagcaaacgattatccaatagaactacaattgttgtgataggagaagaaaaaagagcgacaatagcatcactattgtggtaatagtaggaaaaaagagaaagagggacaattgcatcgtcaattgccataagaacaatgtatccaatccaagcgtttcaaaagcagcacaaagcattattaccacgaaaacctttgataaataggctcttcaatcgaatatgatcacacaaatttcaacagataccgaatatactcacaaaaaagaaaaaaaagaatcataagaacactgcccagatttcagaccaagatcgtcccct
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| CDS seq | atggtggttcttgctgcttctatcatctcaaagtcaggaaaagcacttgtttctagacagtatgttgacatgactcgcataaggattgaaggattacttgcagcattccctaaacttgttggaaatggaaagcagcacacttacattgagactgaaaatgtccgttacgtttaccaacctattgaaggcttatatcttgtagttatcacaaacaaacaaagtaatattcttgaggatctcgacacgttgaggctactctccaagcttgtgcctgaatactgcccctctctcgatgacgatggtgtctgtaaaacagcttttgagcttatatttgcttttgacgaagccatttcttttggaaataaggaaaaagtaacagttcaacaggtcaaagaatattgtgagatggatagtgttgaagagatagagtacaagcagatgatgcaagagaaaatcaaggaaaccaaagattttatgaagaagaaagttattgagattgagaaaaccaggatggagaaaggcaaacataacaaaggaggatactcatcaatattaggtccccaggtgattgaaaaatctttcaatgacatgagcattagttgtactggatttggaagtggttctggattaggtggattgaacacagatacagacacatttactagcaggcccaaaggtcgtacatctggaggtactacaggtgctggtaaaggcattggaatgaaattaggaaatacaaagaagacgaaccagttcttagaatcattgaaggctgaaggtgaagtcattatggaagattttcaaccatgttctcttcagtcaaggtcatcgcctctaccaccgagtgatcctgtcacagtggctgttgaagagaaactcaatgttgcagtgaaaagagatggtggtgttaataattttgatgttcaaggaacacttgctctgcaggtccttaatgatgcagatggattaatcctgttgcagatagaaagccaagatattcctggacttagtttcaaaacacaccccaatatcaacaaggacttgtttaacagtcagcaaattctggggGcaaaagatcctatcaggcctttcccaagtggtcaaaatgaaactcctctagtgaaatggagaatacaggggatgaatgagtcatctttacctctatcagtcaattgctggccatcaatattaggaaatgaaacctacgtcaacatcgagtatgaagcttctgagatgtttgacctgcacagtgtcatcatatctatacctcttcctgcacttcgggaggctccatgtgttagacagatagacggagagtggaagtatgattcaagaaactcggttttggaatggtctattatccttattgatcaatcaaaccgcagtggatccatggaatttgttgttcctccagctgatccatcaatgttttaccccatatccattggattttccgcatcgaatactttcagtaatgtgaaggttagtttgcccatttag
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| Protein seq | MVVLAASIISKSGKALVSRQYVDMTRIRIEGLLAAFPKLVGNGKQHTYIETENVRYVYQPIEGLYLVVITNKQSNILEDLDTLRLLSKLVPEYCPSLDDDGVCKTAFELIFAFDEAISFGNKEKVTVQQVKEYCEMDSVEEIEYKQMMQEKIKETKDFMKKKVIEIEKTRMEKGKHNKGGYSSILGPQVIEKSFNDMSISCTGFGSGSGLGGLNTDTDTFTSRPKGRTSGGTTGAGKGIGMKLGNTKKTNQFLESLKAEGEVIMEDFQPCSLQSRSSPLPPSDPVTVAVEEKLNVAVKRDGGVNNFDVQGTLALQVLNDADGLILLQIESQDIPGLSFKTHPNINKDLFNSQQILGAKDPIRPFPSGQNETPLVKWRIQGMNESSLPLSVNCWPSILGNETYVNIEYEASEMFDLHSVIISIPLPALREAPCVRQIDGEWKYDSRNSVLEWSIILIDQSNRSGSMEFVVPPADPSMFYPISIGFSASNTFSNVKVSLPI |
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| Function | Coatomer subunit delta-1 [UniProtKB/Swiss-Prot:Q0DJA0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_08g0013270 | OsLaMu_08g0013270.01 | Chr08 | 17980185 | 17985385 | - | NAM | ||
| CDS seq | atggtggttcttgctgcttctatcatctcaaagtcaggaaaagcacttgtttctagacagtatgttgacatgactcgcataaggattgaaggattacttgcagcattccctaaacttgttggaaatggaaagcagcacacttacattgagactgaaaatgtccgttacgtttaccaacctattgaaggcttatatcttgtagttatcacaaacaaacaaagtaatattcttgaggatctcgacacgttgaggctactctccaagcttgtgcctgaatactgcccctctctcgatgacgatggtgtctgtaaaacagcttttgagcttatatttgcttttgacgaagccatttcttttggaaataaggaaaaagtaacagttcaacaggtcaaagaatattgtgagatggatagtgttgaagagatagagtacaagcagatgatgcaagagaaaatcaaggaaaccaaagattttatgaagaagaaagttattgagattgagaaaaccaggatggagaaaggcaaacataacaaaggaggatactcatcaatattaggtccccaggtgattgaaaaatctttcaatgacatgagcattagttgtactggatttggaagtggttctggattaggtggattgaacacagatacagacacatttactagcaggcccaaaggtcgtacatctggaggtactacaggtgctggtaaaggcattggaatgaaattaggaaatacaaagaagacgaaccagttcttagaatcattgaaggctgaaggtgaagtcattatggaagattttcaaccatgttctcttcagtcaaggtcatcgcctctaccaccgagtgatcctgtcacagtggctgttgaagagaaactcaatgttgcagtgaaaagagatggtggtgttaataattttgatgttcaaggaacacttgctctgcaggtccttaatgatgcagatggattaatcctgttgcagatagaaagccaagatattcctggacttagtttcaaaacacaccccaatatcaacaaggacttgtttaacagtcagcaaattctggggGcaaaagatcctatcaggcctttcccaagtggtcaaaatgaaactcctctagtgaaatggagaatacaggggatgaatgagtcatctttacctctatcagtcaattgctggccatcaatattaggaaatgaaacctacgtcaacatcgagtatgaagcttctgagatgtttgacctgcacagtgtcatcatatctatacctcttcctgcacttcgggaggctccatgtgttagacagatagacggagagtggaagtatgattcaagaaactcggttttggaatggtctattatccttattgatcaatcaaaccgcagtggatccatggaatttgttgttcctccagctgatccatcaatgttttaccccatatccattggattttccgcatcgaatactttcagtaatgtgaaggttagtttgcccatttag
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| Protein seq | MVVLAASIISKSGKALVSRQYVDMTRIRIEGLLAAFPKLVGNGKQHTYIETENVRYVYQPIEGLYLVVITNKQSNILEDLDTLRLLSKLVPEYCPSLDDDGVCKTAFELIFAFDEAISFGNKEKVTVQQVKEYCEMDSVEEIEYKQMMQEKIKETKDFMKKKVIEIEKTRMEKGKHNKGGYSSILGPQVIEKSFNDMSISCTGFGSGSGLGGLNTDTDTFTSRPKGRTSGGTTGAGKGIGMKLGNTKKTNQFLESLKAEGEVIMEDFQPCSLQSRSSPLPPSDPVTVAVEEKLNVAVKRDGGVNNFDVQGTLALQVLNDADGLILLQIESQDIPGLSFKTHPNINKDLFNSQQILGAKDPIRPFPSGQNETPLVKWRIQGMNESSLPLSVNCWPSILGNETYVNIEYEASEMFDLHSVIISIPLPALREAPCVRQIDGEWKYDSRNSVLEWSIILIDQSNRSGSMEFVVPPADPSMFYPISIGFSASNTFSNVKVSLPI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0368000 | RBH | 0.189019 | 0.096761 | 2.888744 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g28080 | RBH | 0.065456 | 0.000000 | 0.447126 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0368000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0013630 | RBH | 0.0 | 0.000000 | 3.998376 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0013680 | RBH | 0.057946 | 0.485072 | 1.206053 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0013540 | RBH | 0.0 | 1.043757 | 6.820528 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0013830 | RBH | 0.000000 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0013600 | RBH | 0.473468 | 0.000000 | 14.067908 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0266300 | RBH | 0.127252 | 0.047777 | 1.914798 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0013640 | RBH | 0.0 | 0.0 | 1.472806 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0291300 | RBH | 0.2193215 | 0.0966935 | 2.6849485 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0013140 | RBH | 0.093879 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0013260 | RBH | 0.0 | 0.767844 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0013190 | RBH | 0.0 | 2.937610 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0013940 | RBH | 0.000000 | 0.0 | 0.373729 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0011250 | SBH | 0.478564 | 42.515743 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G013380 | RBH | 0.000000 | 0.0 | 1.126109 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0013430 | RBH | 0.000000 | 0.0 | 6.538882 |
