Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_06g0010350 | OGI:06023520 | 9/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr06:8441344-8446133 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcagtccttcaaatcttctatgggatcgaagaagagttcaaaatcatcattcatgatcttgtagactatattccttatattctcctcgtccaggggactctttaagttgatttgttcccctactctccggtaaagctcctcagaaattgcttttaggaaatgtcacgcccgaaaattcactagtaatttccgaacttatttgtgcataaaatcctcgtccaggaatcagccgaggtacacaaactgacaatttaatatacagattcatcaaattaactaaaacgataagtacttacttaagaggcacttagtcctcaccatgaagaaaactgcagcggaaaataaaatctagcgaagctccggctccactcccacaggcagctcaactggggtataagccaaacgtcttctccttctggatccTttttcttcaactgaggttgattgattattgcaaggtgagcatatgacatactcagcaagccacacagcaaatatgcaagtgcacaaggataccaaaggatggcataatataagctcatttgcaaaagcagcatttagcaaaacatttaagagaaataaaacagtagagtaattaatcagaaattttaatcaacactgaacaacacacccatgctgcacaggcccaaccatcctgaacaaccatacccggctgtacagatctaaatccaaaccaggagctaagcaaattattaccaggtataacatctataattattgtgagaggtgtgagactaatcacgaaaaacattgctcaactcgcccataaccgcgggcacagctattcgaatagttttactctggccagaggtgtaccactgtacccacaagacacagcctcaacatcatgtctaccatacgtcgcgatactggaaagtacccgaatagaggctgtgacaataccctttgcacaacacaactcaccacagtgcaccattcctggatcataatcacccccttataaaacaaggcatggactccccagcgacccccgtgggcttatctccgccacttctcagtctggtgctccgcaattaaccatgttatacaaaaggtaaagccgttgcccacgctggcttgtggttggcacggttaatgtttcacaacagtagctcgcgaaccggtccttaattgtcatgagcacgactctcaaaaccatgtgctcacaacccaccattatcaagttttagttggcaagtaattaattaaccaatcacgattgaccatcgtgaacgatcattaagccatcattaaataatagtgagtcataagttatcccaatagtgtgctaatgtttctaagcatggctaagcaattatatctaatatctagctgaaccaatatataaagctcaactagtcaagttataataacccaaggtatcaaggaatagagtaatcaatgcaaacaggccataacaaaggaatagattcacaccacccagtgacattcgaaaataaatgcacagttgaaataaatagagaatttaaatataggatcaacatgctcaaaggattgtgtttaggatctgtgtgacttgccttgcaataatcggtcttcaattaatcttctgaacactcccgacgcactcacgaaccttcgaaacgacggaaacgacaagctaacacgcaaaacgaggaaaaagactaatAaaaaccaaataaacaatacatataaagtaaacaaacatataaatcatgattttagatgaattatgagacttgaacggcctcattctgacttcaaatgaatttattatgaattttacaagattaaatctaattaaagccattttaaaagaattaaataaatttaattcaatttatggacaattttaatatgtagatctttattttatacaatttctgcaacttgaaccacattaaactgagttacaaagaattagttatgaatttttaaagattaaatcggattaaaacacttatatggattttaattgaattatgacgcaataatgaattatttttgaaaaggaaaaagggatttattgcgtcagcgggctagggtttcggtggaccgggcgcacggcggcagctcacgggaacggacggctgagatcgatcggtccacgaccggctcacgggagagggcgacgatgacgtcagtgactacgtcacctccggcggcggctcggatggctcggacggcgcatgctcgccggcgaacggcggctctacggcacaaacggagggcaccaagacgtagatcacggcgcagcgaactcaccgatgaccaaaacgtcggcggaagaccaacggacggcggcggcgacgaggaagaagcggcggcggagatcgggtcgacggcggcgacggtgctccggcggtcttcggcggcggcgaaacggtggacggggacggcggcgacttggcgaccacgatggcggtcttcccgaacgacggcgacgactggagcgacggcggcgcacggctggagcggcggcgacgacggcggcgcgaggcggcacggcgctagggcgctacagacgatggcgggcgaaggcgagagaggcggcGggtagaggagagctcgggggtccttttaaaggggctagcgagcggcgacggaggcccacggcgaccggcggcgagaaggaaagattagggattcggaggaaagaggccgatccgaatcgaactcgaatccacgaatttccaaaccgaattaggcgatgattccaaaggagaaaaggtagaggagatcccaaagattgtttcccctcaaacaatttcaccggaaacggaaaggaacgaccggatttggaaggaaacggcgacggatcggctagggtttcgggcggcggcgacggcgcgaggaggaagacaggcatgacaggcgggccccacctgtcagcgagcgaaggcgcgcgcgcggcggactgggctgacttgggccgggaagatagagaagagaggttttgggccggctttcggcccaaagccaaaagaagacttttaaaaacctttttcaatttaaattattcatgaaatgcaattccatttattAaaaatacttccttagctcaaataaatcccagaaaaatctaggaattatagaattaagcaaagtatttaacaaaattttatctagccctattttatgttgagatttagcaaaataaaattagatcttctcttctaggcttttaaaatcatttctaataattccttttaaacaacaatttataatttaaggattttaaacaagaaaagcacttaacaaatataattagatcattaatgatcaaataattactgaactgttctttgtatcatgtaagaattgagctccgaaaaatccgagaaaatttcagagagttgacttaatcatagagaatttaataaaaaattaaatccatccatgctttatatttaggaaattttatttcccacatttaacttcacttgtaaattaatgaacatttaatataaattctattaagaatttattaaataatttataaatcctgaaaCaaaaatcaggatgtgacaggaaagatgcgtgttcggccgcataagccagataaattgaagaagaaggggcagccccaccccctgtagagttactcgggccagcctccccttgtagctggggtagactggtagtagtttcacctataaaattttgcatttgtggaatgtaggttggaactacctgttccgggattgtagaaaggaagggctccacagttgaaactacctgttctggcatttccgaaaggaaaggcaggacagctaaaaataattcgctgtcagccgcagtatagatacttcgagttttggtaactctggaagtagcgctacagattgaagtttttctgcccccgattataagttctcgtcgaccacggcctataggaaccaggctatccactgcttttaagcctgtttgcatgggttcgtgcacagatttacgttccagaatccctgttttcgtgattgcagatttacgttccagaatccctgttttcgtgaccgaatgacgaaatagatatacgaactgtataggatcattcgatgggatgggataagtgattcttttatgggattcccctgggatcgtggaatcaactaagaatgcaataggtatttgtgatcgagcagcttccagtatgaccgaagactttctatctgcattcagaataaccacacaatcaggttgttggttcaacccaaaatttatctttttcgttcttaaacggaattttttttagccaaataattgctaaaaaaagtcccgatcttccattgagaatcattgatacagctcgccattttttccaatatctcacattgaaataaatgattggtctttaaaaggaaggaacggcattttttacgaatgggagatcctataaaatgaagagcggttcataaacaaatcagtgtcttgtctgaatcgagaatagcaattccacttctggaaccacagatatagacattgaaatggtgagcatctacccgacgcccgccgagatgtgcattcgtacaaagtaatttagtatagaccatagaaaggattgtcatttccagttttccgtttcccgagatactggtggtaagtaataatgcaggcatggcatatttcgttgaatcagtctttttcaccacatcgcgtataaagggaatcgaacccaactcttccactcgccgccaatgcggaaggatgccgccgaaaagaaaggagactgatcttaacgttggcgtcagtttttccaagaaaagtttgatttgattggtctttttcat
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| CDS seq | atgaaaaagaccaatcaaatcaaacttttcttggaaaaactgacgccaacgttaagatcagtctcctttcttttcggcggcatccttccgcattggcggcgagtggaagagttgggttcgattccctttatacgcgatgtggtgaaaaagactgattcaacgaaatatgccatgcctgcattattacttaccaccagtatctcgggaaacggaaaactggaaatgacaatcctttctatggtctatactaaattactttgtacgaatgcacatctcggcgggcgtcgggtagatgctcaccatttcaatgtctatatctgtggttccagaagtggaattgctattctcgattcagacaagacactgatttatagaaagtcttcggtcatactggaagctgctcgatcacaaatacctattgcattcttagttgattccacgatcccaggggaatcccataaaagaatcacttatcccatcccatcgaatgatcctatacagttcgtatatctatttcgtcattcggtcacgaaaacagggattctggaacgtaaatctgcaatcacgaaaacagggattctggaacgtaaatctgtgcacgaacccatgcaaacaggcttaaaagcagtggatagcctggttcctataggccgtggtcgacgagaacttataatcgggggcagaaaaacttcaatctgtagcgctacttccagagttaccaaaactcgaagtatctatactgcggctgacagcgaattatttttagctgtcctgcctttcctttcggaaatgccagaacaggtagtttcaactgtggagcccttcctttctacaatcccggaacaggtagttccaacctacattccacaaatgcaaaattttataggtgaaactactaccagtctaccccagctacaaggggaggctggcccgatctacaagatcatgaatgatgattttgaactcttcttcgatcccatagaagatttgaaggactga
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| Protein seq | MKKTNQIKLFLEKLTPTLRSVSFLFGGILPHWRRVEELGSIPFIRDVVKKTDSTKYAMPALLLTTSISGNGKLEMTILSMVYTKLLCTNAHLGGRRVDAHHFNVYICGSRSGIAILDSDKTLIYRKSSVILEAARSQIPIAFLVDSTIPGESHKRITYPIPSNDPIQFVYLFRHSVTKTGILERKSAITKTGILERKSVHEPMQTGLKAVDSLVPIGRGRRELIIGGRKTSICSATSRVTKTRSIYTAADSELFLAVLPFLSEMPEQVVSTVEPFLSTIPEQVVPTYIPQMQNFIGETTTSLPQLQGEAGPIYKIMNDDFELFFDPIEDLKD |
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| Function | ATP synthase subunit alpha, mitochondrial [UniProtKB/Swiss-Prot:P92549] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_06g0010350 | OsLaMu_06g0010350.01 | Chr06 | 8441344 | 8446133 | - | NAM | ||
| CDS seq | atgaaaaagaccaatcaaatcaaacttttcttggaaaaactgacgccaacgttaagatcagtctcctttcttttcggcggcatccttccgcattggcggcgagtggaagagttgggttcgattccctttatacgcgatgtggtgaaaaagactgattcaacgaaatatgccatgcctgcattattacttaccaccagtatctcgggaaacggaaaactggaaatgacaatcctttctatggtctatactaaattactttgtacgaatgcacatctcggcgggcgtcgggtagatgctcaccatttcaatgtctatatctgtggttccagaagtggaattgctattctcgattcagacaagacactgatttatagaaagtcttcggtcatactggaagctgctcgatcacaaatacctattgcattcttagttgattccacgatcccaggggaatcccataaaagaatcacttatcccatcccatcgaatgatcctatacagttcgtatatctatttcgtcattcggtcacgaaaacagggattctggaacgtaaatctgcaatcacgaaaacagggattctggaacgtaaatctgtgcacgaacccatgcaaacaggcttaaaagcagtggatagcctggttcctataggccgtggtcgacgagaacttataatcgggggcagaaaaacttcaatctgtagcgctacttccagagttaccaaaactcgaagtatctatactgcggctgacagcgaattatttttagctgtcctgcctttcctttcggaaatgccagaacaggtagtttcaactgtggagcccttcctttctacaatcccggaacaggtagttccaacctacattccacaaatgcaaaattttataggtgaaactactaccagtctaccccagctacaaggggaggctggcccgatctacaagatcatgaatgatgattttgaactcttcttcgatcccatagaagatttgaaggactga
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| Protein seq | MKKTNQIKLFLEKLTPTLRSVSFLFGGILPHWRRVEELGSIPFIRDVVKKTDSTKYAMPALLLTTSISGNGKLEMTILSMVYTKLLCTNAHLGGRRVDAHHFNVYICGSRSGIAILDSDKTLIYRKSSVILEAARSQIPIAFLVDSTIPGESHKRITYPIPSNDPIQFVYLFRHSVTKTGILERKSAITKTGILERKSVHEPMQTGLKAVDSLVPIGRGRRELIIGGRKTSICSATSRVTKTRSIYTAADSELFLAVLPFLSEMPEQVVSTVEPFLSTIPEQVVPTYIPQMQNFIGETTTSLPQLQGEAGPIYKIMNDDFELFFDPIEDLKD
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 2.148714 | 84.677292 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g34092 | RBH | 1.484540 | 1.458396 | 4.311256 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0015770 | RBH | 7.609426 | 82.712608 | 38.161720 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0008360 | RBH | 682.535339 | 4605.614258 | 3856.805176 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0139200 | RBH | 233.2459795 | 696.065216 | 402.898468 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0010580 | RBH | 21.339249 | 29.233963 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0010450 | RBH | 3.881464 | 175.446686 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0010460 | RBH | 252.811447 | 3151.609131 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
