Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_03g0027460 | OGI:03071430 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr03:27404302-27412899 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | aaaccgacttggctttcgctacgcccagcttcggccgcgctccaatatatcgcgttgcggaccaaaatcacctccAaaaagtttttcactcgttttccccTtccttccgccggccctactcgctaggtgttgggcggcGggcgtcccacTcccaccacctcgaggcgagggggctaGggtttccgccatggaggacgAcgagtacgaggaggggatggagatggagatgggcgggcaccaCcACccgcaccacggcggcgggtacggcgccgaagagtacggggccgtcggcggggaggagatggaggacgaggaggcggatgggGACGCCCCCGACGAGGAGGAGATCACCCAGGAGGACGCCTGGGCCGTCATCTCCGCCTACTTCGAGGAGAAGGGCCTCGTGCGCCAGCAGCTCGACTCCTTCGACGAGTTCATCCAGAACACCATGCAGGAGATCGTCGACGAGTCCGCCGACATCGAGATCCGCCCCGAGTCGCAGCACAACCCCGGCCGCCAGGCCGAGTTCGCCGAGGTTGCGCCCCCCTCACCACCCCTAGCGAATGCTGTTGCTGCTTAAAAAAACTTTTGCTGTTTGCTTGCTCCTCTGAATTGGGCGGGCGATTGCACGGCTTAAGGCATACTAGGGTTTGGCGACCTTGGTAATGGCGAGGGGGCAGGTCTCTTAACCTGTTCTTTCACTGGCTAGCTGCTTGATTAGATGGCAGTTAGGGTTTTGCAAGGGTTAAGAGGAGCTTTCTCAGATTGGAGACTGAATTTTAAAATGCAATAGCAACTTGAACGCTAGGGTTGATGGTTGAGCTGGATTtttcagggtgaaatagtcttggctaatattattctagtgttgagataggagTtttgttcaagtttttttgtgcgggtcggagtggagaactcttggattcacaagggttgccactagcAaagcttacaatgagttttgaagtgtgcattgctttgcgttgctgcagttccaagttatcactagtGAgttagcagaagcaGagtgtcaatatggcttgtgttgtttgtttgtgctgatatcatgttcaactatttGgaattgatgttggatagacagaagttaatctcaatcctaactgtggtctttcagcaaacagttttgttatataacatagtactcacagaaattatattcaaaaaatttctgggaacagtggtgtagaacttcatgtctagtttgaccTtttgagatgtatagtcatgtatatgcaattatacactattgtaaaattctcttggagcaatgtagtgaaactgcatgcctatttgatattttgagatggatatcatacaagaaatcttaccagtaaatgtaagacacttgactatactggagtggggaaagaaactgaatgtctccttttgtaataaatatgggtattttgttattcagagtgacttgcAacactctgcctgtatgacataggcttatatcagactgtttagaactatacactgaattatgctAaaaaaactgtctttgacttctgtttttgctgAagtgtcaagggtcataagaaagattaaaagaactggtatgtcttagctagaatgctatgataggtggcataatcttaTtgttgcagtcaagacGggacctactcagttcaatgataagctccgattcctcttgcaacatatgaaatccttttaggcgattggaacctcaataaaaactagaattacaaatagtaatctctgctgggattttagcaatgactagtgaaaatatcACACGAGTTTTCAAGAAAAAAAATATCCACAAAAAAGGGAAAACTGTTTGACAAGTACTGAGGATGAATGTTATCTCTTGCTACCCTTCACATGCTGGGGAAAAAGTAACAATACTGAGTAGAGTTTATATATACAAAAGTAAAATAAAATAAACTGACTTACCTATGCAAGTTTCTGAATATTGTTTCTTATTTTCGGGCCTGGATATTGCGAGTGTCACAACACGGAATCTTGTCGTTTTTTTCAGTTGAAAACAATTATTATTTGCTTTTGTGCTGATACTTATCATGGTCTTGTATGCTTCTTTAGACACTCCACAAGATCAGCTTTGGACAAATCTATCTGAGTAAACCAATGATGACAGAAGCTGATGGAGAGACAGCTACTTTATTTCCAAAATCGGCAAGGCTCCGAAACCTAACATACTCGGgcgccactatatgttgatgtatcatacagagttatgaaaaaaggacatgactgtgaagaggttacagaaactatggagtacccaaaagtctttattggaaaggttgtaattaacatatctggatactttgctcttttatgtagttttctttctaactgtttcttctcctgcaggttcctatcatgttgcgttctagttattgcacactgtttcaacagtccgaaaaggatcttacagaacttggagagtgcccttatgaccaaggagggtattttataatcaatggtagtgAaaaagtccttattgcccaggagaagatgagcaccaaccatgtctatgtgtttaagaagaggcagcctaataaatacgcatacgtggctgaagtccgttctatggcagagaaccagaatagacctgctagtagtatgtttgtgcggatgctttctagggcaggcgcgaaaGgggtgagtaatcatatacaagcttcgaaattaAccattataggtgcaCgtgtttttatgtctgtattcttaatgagcactagtgtaagaatattttcatatgacttccaactggaaCaaaagtaattctatttactaGtgtattcttaatgagcattagtgttttccttgttaccctAaatttttgttaaatattccttgtgatgcagggttcatctggtcaatatatacgtgctactttgccttatatccgtgcagacattccgatcatcattgtgttccgagcattaggatttgttgctgataaagatatattagagcacatatgctatgatttctctgatacacaaatgatGgaattgctacgcccatctttagaggaagctttcgtcattcagaatcagcaggtatttttagctgtttgaatacatcatacagctttcaactggaactAaactaattatatgaactagtAaatttatgattcttaattttggtttcatctttctaaagctttaatacacctattttaaggttgctctggattacattggaaagcgtggagctactgttggtgtaactaaagaaaagagaattaagtatgtggtggcagagagttacctctgtatatgctagaaaagttaaattactatgttggtacttactacgtggctactgcaggtatgccaaagagatacttcaaaaagaaatgttaccccatgttggtgtgggtgaattctgtgaaaccaaaaaggcgtactactttgggtatgcgactatgcgttctaaattgcatgtgtttaattatctttaagaaagtaaaagcttgctgtagttcgattgaaagcagaatggctgattcgtgtatacttattatgcaggtacattaTtcatcgtctgctgatgtgcgctcttGgtcgaagagctgaagatgacagagatcattatggcaacaaaagactggatcttgcaggtccattgcttggaggactgtttagaatggttcgtctccgatatgtcagaactaaaatagtgatgagtctcttttctgaagtgggaccaaatgttctaatttttttccttgtaaatacagcttttcagaaagttgacaaggGATttgaggtcatatgtgcaaaaggttccctttctaaaccaccctccttttcttttactcagccatggaggctattaactgatgtttttcttgaatccagtgtgtggataatggaaaggaagtcaatctgcaatttgctattaaagccaaaaccattactagtgggttgaagtattcccttgctactggaaactggggacaggctaaccaagctggtaccagggctggtgtttctcaggtgggtactctttcttgaacatttgatgtttttatttcactgattccaacatggtttagcgaacaaatgtatgaatccatgctcttcattccttgttttcttttgcgtataggtgcttaatcgccttacctatgcatctacattatctcatctgcggaggcttaactctccaattGggcgtgaaggtcaatatcaaattttctcaatttcatacattacttatccactgagacttgattctgaggattgtgttgatcttaatagggaaattggcaaaacctcggcaattgcataattctcattggggaatgatgtgccctgctgaaacacctgagggacaagtaagtaattgacatttatgtagttatggtatgttggaggaaggctctgtgcttacgtttctttattatgccttgtattcaggcttgtggtttggttaaaaatcttgcattgatggtgtatatcactgttggttctgctgcaaatcctattttggaatttttggaggagtggggcacagaaaattttgaggtttgttttcattccTttggcagaacataatggttttgctccgtttcccctccatgtcttataTtttggggtcttttgcaacAattactgattttggtctgtgtttatcTtttaacaggagatatcaccagccgtcattccacaagctgctaaaatttttgtcaacggttgttgggttggaattcacaggaaccctgacctgttggtgaagactcttaggcgtttgagaagacaggtatgtgccgtgcttaacttgaataatttggaagatggggccaaattctgcaggcaataaattggtgaatagatgagtgtgtaggaaattaactgcattcttttgacatactttgcttgacatcttttagtattgtgtaaattgctttctgcagttggttaaacatatataagctcagtgtattaagattggacaagttgaggatggaatttacttgtatcatgctattttaggagggtctgtgtttaacctagaacatgtcagatcagacttacatgatgagctttgtcaaTtttcagattgatgtcaacactgaagttggtgtggttcgtgatattcgtcttaaagaactcagactttatacagactatgggcgttgcagtcgtccactgtttattgttgAaaaccaaaggcttcttattaaaaagagacatatccgagcgttgcagcaaagggtctggcatttactactgtatcctaggtttttttactacagtttagacATatatctAtgtttcttatgtgcttgtaTtattctatggtgtatttatccaggagacacctgaggaaggttggcatgacttagttgcgaaaggatttattgagtacatagatactgaagaggaagAaactactatgatctccatgaccattaatgtaagtaagatctgtcatgcaaagtatgccaaattgactatttgtagggcacctaaggttaccttccatgggaactccttttgcctttgtgtgaaaagggccaaaatgtttatcatcatcatcatctagtataatctaaataaataaatttcaggaccttattggtgcaagacacaatccagaggaggcgtactctgaaacttacacacattgtgagattcatccttcattgatacttggtgtctgtgcctcgattattccttttccagatcataaccaggtaacacatcccattatgcgatGttgtatgctgcatctttttaagcatgtctaattcattcctttgaatgtacagtcacctcgtaatacatatcagtctgctatgggAaaacaagcaatgggaatctatgttaccaactatcagttaagaatggtgagtgtgccatctgtctgctttcttggtctgttcgtatagatttgattcttaaacatccaactttgtattcaggacacattggcctatgtgctatactacccacaaaagcctcttgttactactcgtgctatggaacatttgcacttcagacagttaccagctggcattgtaagtgaacaatcttaaccgcgggacaccttgtttgctttctcttcatgttctgcatttgttttgtgatgtaattactaataccttgctttgatgaTttgggaagaatgcaattgttgctattgcatgctactctggatataatcaagaagattcggttattatgaaccaatcttcaatagatcgtggattcttccgatctctgtttttccgctcatacaggtatgaagacattacactgtatactttataagtgccatccaatgcttgtagcctgacaatccttcatatgcagagatgaggaaaagaagatggggactcttgtcAaagaggagtttggccgtccAaatagggagaatactatggtaatgctcccctagattcattgaagattttatctttgtcggtcttatgaactaatgttttttgaaattttccttgcagggaatgcgtcatgggtcatatgatAaactagatgatgatggacttgcaccaccagtaagtagagaacattattgtaggcttttcTttatcatggcgacataatagatgttctgAtatatattcatgtatcaGggtacAagggtatctggtgaagatgtcattattgggaagacatctcctattccacaagatgatgcccaagggcaagctactagatacacaaagcgtgatcacagtacttcgctgcgccacagtgaaagtgggatggtggatcaggtctgttattCcctccgccgcctcttatgtttctgtgtggtgttatgacactgaaatcaacaggcttctaagtctactatcttttgtgcaggttctcctaacaacaaatgctgatggtttaagatttgttaaggttagaatgcgatcagttcgtataccacagattggggataagtttagtagtaggcatggtcagaaaggaactgtgggaatgacttatacacaagaggacatgccatggactattgaaggcatcacacctgatattattgtgaatccacatgctattccatCccgtatgactattggtcaactgattgagtgtattatgggtaaagttgctgctcacatgggaaaagaaggagatgcaactcctttcactgatgttactgtgagtaatcttttatagacttagtcttgattaTattctacttgtttttaagaaaatgttcaacccctagcttactgcaatcagttataatctagttatagtcccaagattatgtgataatcaatcactttttcttttattgttcaaacctgcaataatctgaatttgttacataaatttcaggtggataacatcagcaaagcacttcataaatgtggttatcagatgcgtggattcgagaccatgtacaacggtcacactggaagaaaattaactgccatgattttccttggtcctacttattaccagagacttaagcacatggtggatgacaagattcactctagaggccgtggtcctgtgcagatacttaccagacaacctgcagaggggcgctcacgcgatggtggtctccggtttggagagatggagagggactgtatgattgctcatggcgctgcatttttccttaaggaaaggTtatttgaccagagtgatgcgtacagagtccatgtatgcgagaagtgtgggcttattgctattgctaatctcaagaagaattcctttgagtgcagagggtgcaagaacaaaaccgacattgtccaagtaagtataattccttcttctctgtactgttaattactatgaatctaaagcctatttatagaagtactaactactatggcaataacgggaattacactgctacctactgacaggtgcatataccctacgcgtgtaagcttctgttccaggagctTAtggcgatggccatcgctcccaggatgctcactcaggataacaaaactgggaaggatcagaagaaacgttgagaccAaatattacatggggcactcgcttgtcgtactatgtcttcgttcatagtcaatacttaaatctaacttGggagaaatttgggcttagcggtctgaccccctgaggcagaaagcagtcagtaGgccacatcctcgagttatatatatccctggtgtgctgtgcccttggattatgccaaattgacgccatgggcgaagtggtgcaaagaaattttgtttcttgtatactagggatacggattaagggactgtactgaacaatcTttaccGggactaaaatgttgttgtttgtactgTttcttttttatttttttttggcttttggggatactagatcccaactcgaatattgcctgtattggctctaccagcacgatatcaaaattgtttgatgagagatcttgtaagaaaatagtaataatttagtgttaactactgctagcttgctgtcgggtgcgtcatgaattagcctcaattacattttttctactgaggcctggatgtacttcgatgttcagagtctagttttaaatggtacaattagtacatactaactgtttcatgtttcAaagtatttctgtggctaataacaacacctt
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| CDS seq | atgaaaaaaggacatgactgtgaagaggttacagaaactatggagtacccaaaagtctttattggaaaggttgttcctatcatgttgcgttctagttattgcacactgtttcaacagtccgaaaaggatcttacagaacttggagagtgcccttatgaccaaggagggtattttataatcaatggtagtgAaaaagtccttattgcccaggagaagatgagcaccaaccatgtctatgtgtttaagaagaggcagcctaataaatacgcatacgtggctgaagtccgttctatggcagagaaccagaatagacctgctagtagtatgtttgtgcggatgctttctagggcaggcgcgaaaGggggttcatctggtcaatatatacgtgctactttgccttatatccgtgcagacattccgatcatcattgtgttccgagcattaggatttgttgctgataaagatatattagagcacatatgctatgatttctctgatacacaaatgatGgaattgctacgcccatctttagaggaagctttcgtcattcagaatcagcaggttgctctggattacattggaaagcgtggagctactgttggtgtaactaaagaaaagagaattaagtatgccaaagagatacttcaaaaagaaatgttaccccatgttggtgtgggtgaattctgtgaaaccaaaaaggcgtactactttgggtacattaTtcatcgtctgctgatgtgcgctcttGgtcgaagagctgaagatgacagagatcattatggcaacaaaagactggatcttgcaggtccattgcttggaggactgtttagaatgaaagttgacaaggGATttgagtgtgtggataatggaaaggaagtcaatctgcaatttgctattaaagccaaaaccattactagtgggttgaagtattcccttgctactggaaactggggacaggctaaccaagctggtaccagggctggtgtttctcaggtgcttaatcgccttacctatgcatctacattatctcatctgcggaggcttaactctccaattGggcgtgaagggaaattggcaaaacctcggcaattgcataattctcattggggaatgatgtgccctgctgaaacacctgagggacaagcttgtggtttggttaaaaatcttgcattgatggtgtatatcactgttggttctgctgcaaatcctattttggaatttttggaggagtggggcacagaaaattttgaggagatatcaccagccgtcattccacaagctgctaaaatttttgtcaacggttgttgggttggaattcacaggaaccctgacctgttggtgaagactcttaggcgtttgagaagacagattgatgtcaacactgaagttggtgtggttcgtgatattcgtcttaaagaactcagactttatacagactatgggcgttgcagtcgtccactgtttattgttgAaaaccaaaggcttcttattaaaaagagacatatccgagcgttgcagcaaagggagacacctgaggaaggttggcatgacttagttgcgaaaggatttattgagtacatagatactgaagaggaagAaactactatgatctccatgaccattaattcacctcgtaatacatatcagtctgctatgggAaaacaagcaatgggaatctatgttaccaactatcagttaagaatggacacattggcctatgtgctatactacccacaaaagcctcttgttactactcgtgctatggaacatttgcacttcagacagttaccagctggcattaatgcaattgttgctattgcatgctactctggatataatcaagaagattcggttattatgaaccaatcttcaatagatcgtggattcttccgatctctgtttttccgctcatacagagatgaggaaaagaagatggggactcttgtcAaagaggagtttggccgtccAaatagggagaatactatgggaatgcgtcatgggtcatatgatAaactagatgatgatggacttgcaccaccaggtacAagggtatctggtgaagatgtcattattgggaagacatctcctattccacaagatgatgcccaagggcaagctactagatacacaaagcgtgatcacagtacttcgctgcgccacagtgaaagtgggatggtggatcaggttctcctaacaacaaatgctgatggtttaagatttgttaaggttagaatgcgatcagttcgtataccacagattggggataagtttagtagtaggcatggtcagaaaggaactgtgggaatgacttatacacaagaggacatgccatggactattgaaggcatcacacctgatattattgtgaatccacatgctattccatCccgtatgactattggtcaactgattgagtgtattatgggtaaagttgctgctcacatgggaaaagaaggagatgcaactcctttcactgatgttactgtggataacatcagcaaagcacttcataaatgtggttatcagatgcgtggattcgagaccatgtacaacggtcacactggaagaaaattaactgccatgattttccttggtcctacttattaccagagacttaagcacatggtggatgacaagattcactctagaggccgtggtcctgtgcagatacttaccagacaacctgcagaggggcgctcacgcgatggtggtctccggtttggagagatggagagggactgtatgattgctcatggcgctgcatttttccttaaggaaaggTtatttgaccagagtgatgcgtacagagtccatgtatgcgagaagtgtgggcttattgctattgctaatctcaagaagaattcctttgagtgcagagggtgcaagaacaaaaccgacattgtccaagtgcatataccctacgcgtgtaagcttctgttccaggagctTAtggcgatggccatcgctcccaggatgctcactcaggataacaaaactgggaaggatcagaagaaacgttga
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| Protein seq | MKKGHDCEEVTETMEYPKVFIGKVVPIMLRSSYCTLFQQSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAENQNRPASSMFVRMLSRAGAKGGSSGQYIRATLPYIRADIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEFCETKKAYYFGYIIHRLLMCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMKVDKGFECVDNGKEVNLQFAIKAKTITSGLKYSLATGNWGQANQAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWGTENFEEISPAVIPQAAKIFVNGCWVGIHRNPDLLVKTLRRLRRQIDVNTEVGVVRDIRLKELRLYTDYGRCSRPLFIVENQRLLIKKRHIRALQQRETPEEGWHDLVAKGFIEYIDTEEEETTMISMTINSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEEFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTSPIPQDDAQGQATRYTKRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRKLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAFFLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTQDNKTGKDQKKR |
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| Function | DNA-directed RNA polymerase II subunit RPB2 [UniProtKB/Swiss-Prot:Q42877] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_03g0027460 | OsLaMu_03g0027460.02 | Chr03 | 27404302 | 27412878 | + | NAM | ||
| CDS seq | atggaggacgAcgagtacgaggaggggatggagatggagatgggcgggcaccaCcACccgcaccacggcggcgggtacggcgccgaagagtacggggccgtcggcggggaggagatggaggacgaggaggcggatgggGACGCCCCCGACGAGGAGGAGATCACCCAGGAGGACGCCTGGGCCGTCATCTCCGCCTACTTCGAGGAGAAGGGCCTCGTGCGCCAGCAGCTCGACTCCTTCGACGAGTTCATCCAGAACACCATGCAGGAGATCGTCGACGAGTCCGCCGACATCGAGATCCGCCCCGAGTCGCAGCACAACCCCGGCCGCCAGGCCGAGTTCGCCGAGACACTCCACAAGATCAGCTTTGGACAAATCTATCTGAGTAAACCAATGATGACAGAAGCTGATGGAGAGACAGCTACTTTATTTCCAAAATCGGCAAGGCTCCGAAACCTAACATACTCGGgcgccactatatgttga
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| Protein seq | MEDDEYEEGMEMEMGGHHHPHHGGGYGAEEYGAVGGEEMEDEEADGDAPDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGRQAEFAETLHKISFGQIYLSKPMMTEADGETATLFPKSARLRNLTYSGATIC |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_03g0027460 | OsLaMu_03g0027460.04 | Chr03 | 27409997 | 27412899 | + | NAM | ||
| CDS seq | atgggAaaacaagcaatgggaatctatgttaccaactatcagttaagaatggacacattggcctatgtgctatactacccacaaaagcctcttgttactactcgtgctatggaacatttgcacttcagacagttaccagctggcattaatgcaattgttgctattgcatgctactctggatataatcaagaagattcggttattatgaaccaatcttcaatagatcgtggattcttccgatctctgtttttccgctcatacagagatgaggaaaagaagatggggactcttgtcAaagaggagtttggccgtccAaatagggagaatactatgggaatgcgtcatgggtcatatgatAaactagatgatgatggacttgcaccaccaggtacAagggtatctggtgaagatgtcattattgggaagacatctcctattccacaagatgatgcccaagggcaagctactagatacacaaagcgtgatcacagtacttcgctgcgccacagtgaaagtgggatggtggatcaggttctcctaacaacaaatgctgatggtttaagatttgttaaggttagaatgcgatcagttcgtataccacagattggggataagtttagtagtaggcatggtcagaaaggaactgtgggaatgacttatacacaagaggacatgccatggactattgaaggcatcacacctgatattattgtgaatccacatgctattccatCccgtatgactattggtcaactgattgagtgtattatgggtaaagttgctgctcacatgggaaaagaaggagatgcaactcctttcactgatgttactgtggataacatcagcaaagcacttcataaatgtggttatcagatgcgtggattcgagaccatgtacaacggtcacactggaagaaaattaactgccatgattttccttggtcctacttattaccagagacttaagcacatggtggatgacaagattcactctagaggccgtggtcctgtgcagatacttaccagacaacctgcagaggggcgctcacgcgatggtggtctccggtttggagagatggagagggactgtatgattgctcatggcgctgcatttttccttaaggaaaggTtatttgaccagagtgatgcgtacagagtccatgtatgcgagaagtgtgggcttattgctattgctaatctcaagaagaattcctttgagtgcagagggtgcaagaacaaaaccgacattgtccaagtgcatataccctacgcgtgtaagcttctgttccaggagctTAtggcgatggccatcgctcccaggatgctcactcaggataacaaaactgggaaggatcagaagaaacgttga
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| Protein seq | MGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEEFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTSPIPQDDAQGQATRYTKRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRKLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAFFLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTQDNKTGKDQKKR
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_03g0027460 | OsLaMu_03g0027460.01 | Chr03 | 27404302 | 27412878 | + | NAM | ||
| CDS seq | atgaaaaaaggacatgactgtgaagaggttacagaaactatggagtacccaaaagtctttattggaaaggttgttcctatcatgttgcgttctagttattgcacactgtttcaacagtccgaaaaggatcttacagaacttggagagtgcccttatgaccaaggagggtattttataatcaatggtagtgAaaaagtccttattgcccaggagaagatgagcaccaaccatgtctatgtgtttaagaagaggcagcctaataaatacgcatacgtggctgaagtccgttctatggcagagaaccagaatagacctgctagtagtatgtttgtgcggatgctttctagggcaggcgcgaaaGggggttcatctggtcaatatatacgtgctactttgccttatatccgtgcagacattccgatcatcattgtgttccgagcattaggatttgttgctgataaagatatattagagcacatatgctatgatttctctgatacacaaatgatGgaattgctacgcccatctttagaggaagctttcgtcattcagaatcagcaggttgctctggattacattggaaagcgtggagctactgttggtgtaactaaagaaaagagaattaagtatgccaaagagatacttcaaaaagaaatgttaccccatgttggtgtgggtgaattctgtgaaaccaaaaaggcgtactactttgggtacattaTtcatcgtctgctgatgtgcgctcttGgtcgaagagctgaagatgacagagatcattatggcaacaaaagactggatcttgcaggtccattgcttggaggactgtttagaatgaaagttgacaaggGATttgagtgtgtggataatggaaaggaagtcaatctgcaatttgctattaaagccaaaaccattactagtgggttgaagtattcccttgctactggaaactggggacaggctaaccaagctggtaccagggctggtgtttctcaggtgcttaatcgccttacctatgcatctacattatctcatctgcggaggcttaactctccaattGggcgtgaagggaaattggcaaaacctcggcaattgcataattctcattggggaatgatgtgccctgctgaaacacctgagggacaagcttgtggtttggttaaaaatcttgcattgatggtgtatatcactgttggttctgctgcaaatcctattttggaatttttggaggagtggggcacagaaaattttgaggagatatcaccagccgtcattccacaagctgctaaaatttttgtcaacggttgttgggttggaattcacaggaaccctgacctgttggtgaagactcttaggcgtttgagaagacagattgatgtcaacactgaagttggtgtggttcgtgatattcgtcttaaagaactcagactttatacagactatgggcgttgcagtcgtccactgtttattgttgAaaaccaaaggcttcttattaaaaagagacatatccgagcgttgcagcaaagggagacacctgaggaaggttggcatgacttagttgcgaaaggatttattgagtacatagatactgaagaggaagAaactactatgatctccatgaccattaattcacctcgtaatacatatcagtctgctatgggAaaacaagcaatgggaatctatgttaccaactatcagttaagaatggacacattggcctatgtgctatactacccacaaaagcctcttgttactactcgtgctatggaacatttgcacttcagacagttaccagctggcattaatgcaattgttgctattgcatgctactctggatataatcaagaagattcggttattatgaaccaatcttcaatagatcgtggattcttccgatctctgtttttccgctcatacagagatgaggaaaagaagatggggactcttgtcAaagaggagtttggccgtccAaatagggagaatactatgggaatgcgtcatgggtcatatgatAaactagatgatgatggacttgcaccaccaggtacAagggtatctggtgaagatgtcattattgggaagacatctcctattccacaagatgatgcccaagggcaagctactagatacacaaagcgtgatcacagtacttcgctgcgccacagtgaaagtgggatggtggatcaggttctcctaacaacaaatgctgatggtttaagatttgttaaggttagaatgcgatcagttcgtataccacagattggggataagtttagtagtaggcatggtcagaaaggaactgtgggaatgacttatacacaagaggacatgccatggactattgaaggcatcacacctgatattattgtgaatccacatgctattccatCccgtatgactattggtcaactgattgagtgtattatgggtaaagttgctgctcacatgggaaaagaaggagatgcaactcctttcactgatgttactgtggataacatcagcaaagcacttcataaatgtggttatcagatgcgtggattcgagaccatgtacaacggtcacactggaagaaaattaactgccatgattttccttggtcctacttattaccagagacttaagcacatggtggatgacaagattcactctagaggccgtggtcctgtgcagatacttaccagacaacctgcagaggggcgctcacgcgatggtggtctccggtttggagagatggagagggactgtatgattgctcatggcgctgcatttttccttaaggaaaggTtatttgaccagagtgatgcgtacagagtccatgtatgcgagaagtgtgggcttattgctattgctaatctcaagaagaattcctttgagtgcagagggtgcaagaacaaaaccgacattgtccaagtgcatataccctacgcgtgtaagcttctgttccaggagctTAtggcgatggccatcgctcccaggatgctcactcaggataacaaaactgggaaggatcagaagaaacgttga
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| Protein seq | MKKGHDCEEVTETMEYPKVFIGKVVPIMLRSSYCTLFQQSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAENQNRPASSMFVRMLSRAGAKGGSSGQYIRATLPYIRADIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEFCETKKAYYFGYIIHRLLMCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMKVDKGFECVDNGKEVNLQFAIKAKTITSGLKYSLATGNWGQANQAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWGTENFEEISPAVIPQAAKIFVNGCWVGIHRNPDLLVKTLRRLRRQIDVNTEVGVVRDIRLKELRLYTDYGRCSRPLFIVENQRLLIKKRHIRALQQRETPEEGWHDLVAKGFIEYIDTEEEETTMISMTINSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEEFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTSPIPQDDAQGQATRYTKRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRKLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAFFLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTQDNKTGKDQKKR
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_03g0027460 | OsLaMu_03g0027460.03 | Chr03 | 27404302 | 27408499 | + | NAM | ||
| CDS seq | atggaggacgAcgagtacgaggaggggatggagatggagatgggcgggcaccaCcACccgcaccacggcggcgggtacggcgccgaagagtacggggccgtcggcggggaggagatggaggacgaggaggcggatgggGACGCCCCCGACGAGGAGGAGATCACCCAGGAGGACGCCTGGGCCGTCATCTCCGCCTACTTCGAGGAGAAGGGCCTCGTGCGCCAGCAGCTCGACTCCTTCGACGAGTTCATCCAGAACACCATGCAGGAGATCGTCGACGAGTCCGCCGACATCGAGATCCGCCCCGAGTCGCAGCACAACCCCGGCCGCCAGGCCGAGTTCGCCGAGACACTCCACAAGATCAGCTTTGGACAAATCTATCTGAGTAAACCAATGATGACAGAAGCTGATGGAGAGACAGCTACTTTATTTCCAAAATCGGCAAGGCTCCGAAACCTAACATACTCGGgcgccactatatgttga
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| Protein seq | MEDDEYEEGMEMEMGGHHHPHHGGGYGAEEYGAVGGEEMEDEEADGDAPDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGRQAEFAETLHKISFGQIYLSKPMMTEADGETATLFPKSARLRNLTYSGATIC |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_03g0027460 | OsLaMu_03g0027460.05 | Chr03 | 27409706 | 27412740 | + | IsoSeq | ||
| CDS seq | atggcgctgcatttttccttaaggaaaggTtatttgaccagagtgatgcgtacagagtccatgtatgcgagaagtgtgggcttattgctattgctaatctcaagaagaattcctttgagtgcagagggtgcaagaacaaaaccgacattgtccaagtgcatataccctacgcgtgtaagcttctgttccaggagctTAtggcgatggccatcgctcccaggatgctcactcaggataacaaaactgggaaggatcagaagaaacgttgagaccAaatattacatggggcactcgcttgtcgtactatgtcttcgt
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| Protein seq | MALHFSLRKGYLTRVMRTESMYARSVGLLLLLISRRIPLSAEGARTKPTLSKCIYPTRVSFCSRSLWRWPSLPGCSLRITKLGRIRRNVETKYYMGHSLVVLCLR |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr03 | 27407976 | 27408076 | + | OsLaMu_03g0027460.03 | OsLaMu_03g0027460.01,OsLaMu_03g0027460.03 | All |
| SE | Chr03 | 27409749 | 27410105 | + | OsLaMu_03g0027460.05 | OsLaMu_03g0027460.05,OsLaMu_03g0027460.01 | All |
| A5 | Chr03 | 27408096 | 27408189 | + | OsLaMu_03g0027460.03 | OsLaMu_03g0027460.01,OsLaMu_03g0027460.03 | All |
| A5 | Chr03 | 27406615 | 27406687 | + | OsLaMu_03g0027460.01 | OsLaMu_03g0027460.01,OsLaMu_03g0027460.03 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 2.048284 | 36.808041 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0403100 | SBH | 1.513158 | 1.699405 | 3.725279 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g44484 | RBH | 5.586602 | 4.447246 | 2.513078 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0403100 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0028040 | RBH | 1.216240 | 25.375704 | 19.273375 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0027770 | RBH | 0.773044 | 7.677969 | 7.240241 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0027820 | RBH | 5.437008 | 23.938057 | 26.632702 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0027870 | RBH | 0.612620 | 0.690021 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0027610 | RBH | 20.661768 | 50.553898 | 59.976635 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0435700 | RBH | 23.8020495 | 59.3000105 | 83.9333265 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0027350 | RBH | 1.433853 | 2.582795 | 5.029388 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0437200 | RBH | 22.7225285 | 57.428856 | 58.8806285 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0027630 | RBH | 0.960085 | 0.676322 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0027690 | RBH | 1.699903 | 37.906574 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0027740 | RBH | 15.237273 | 36.063091 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0027530 | RBH | 2.984340 | 3.009037 | 4.172245 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G027480 | RBH | 1.657077 | 10.825590 | 9.600111 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0027500 | RBH | 5.646489 | 35.980576 | 24.073008 |
