Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_03g0017580 | OGI:09036170 | 15/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr03:14091549-14094285 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGTGCCAGGAAAAATTGGTACAAGAAGCCGTGGATACACTTCTTGATAGTGGGTCCCGCGGGCAACCAACGAGGGATGGTCACAATAAAGTATACAAATCACTTTCAGATGTAATTGAAGGTAAAGAGGGGAGGTTTCGCGAAACTCTGCTTGGGAAACGGGTCGATTACTCGGGGCGTTCTGTCATTGTTGTGGGTCCTTCACTTTCATTACATCAATGTGGGTTACCTCTAGAGATAGCAATAAAGCTTTTTCAGCTATTTGTAATTCGCGATTTAATCACGAAACGTGCTACTTCTAATGTTAGGATTGCTAAAAGGAAAATTTGGGAAAAGGAACCCATTGTATGGGAAATACTTCAAGAAGTTATGAGGgggacatcctgtactgttgaatagagcacctaccctgcatagattaggcatacaggctttccaacccactttagtagaggggcgtactatttgtttacacccattagtgtgtaaaggtttcaatgcagactttgatggggatcaaatggctgttcatctacctttatccttggaagctcaggcggaagctcgtttacttatgttttctcatatgaatctcctatctcccgctattggggatcctatttgcgtaccaacccaagacatgcttatcggactttatgtattaacgattggaaaccgtcgaggtatttgtgcaaatagatataatagttgcggaaactatccaaaccaaaagtaaattacaataataataatcctaagtatacgaaagataaagaatctctttttctagttcctatgatgcactgggagcttatagacagaaacaaatctgtttagacagtcccttgtggctccgatggaaactagatcaacgcgtcattgggttaagagaagttccgattgaagttcaatatgaatctttggggacttatcgtgagatttatgcccactatctagtagtgggaaatagaaaaaaggaaatccgttctatatacattcgcaccactcttggtcatatttctttttatagagaaatagaggaagccatacaaggatttagtcaggcctattcatacactatctaaacaaggaagttagattcggggatgcccctttcaaggggcattccgatttcgctagtatcatcatttttgccgcacgaatccagattgagattgaggaaaggaagttaactaagttttcgaatcactgactcaggcccattgtcgaatcctactcagcaattgtcgaattatactcagccgaaaaagggggtacttatttatggcggaacgggccaatctggtctttcagaataaagagatagatggaactgctatgaaacgacttattagcagattaatagatcatttcggaatgggatatacatcccatatactggatcaaataaaaacgctgggcttccatcaagccactactacatcgatttcattaggaatcgaggatcttttaacaataccctctaagggatggttagtccaagatgcggaacaacagagttttcttttggaaaaaCACTATTATTATGGGGCTGTACACGCGGTAGAAAAATTACGCCAATCCGTTGAAATCTGGTATGCTACAAGTGAATATTTGAAACACGAAATGAATTCGAATTTTCGGATAACAGATCCTTCTAATCCAGTCTATCTAATGTCTTTTTCAGGAGCTAGAGGAAATGCATCGCAGGTACACCAATTAGTAGGTATGCGAGGATTAATGGCGGATCCTCAAGGACAAATGATTGATTTACCTATTCAAAGCAATTTACGCGAGGGACTTTCTTTGACAGAATATATAATTTCCTGCTACGGAGCCCGCAAAGGGGTTGTAGATACTGCTGTACGAACGGCGGATGCTGGATATCTTACACGTAGACTTGTTGAAGTAGTTCAACATATTATTGTGCGTAGAAGAGATTGTGGTACTATCCAAGCTATTTCTGTGAGTCCTCAAAATGGGATGACGGAAAAACTTTTTGTACAAACATTAATAGGTCGTGTATTAGCAAACGATATATATATCGGTTCACGGTGCATTGCCACTCGAAATCAAGATATTGGAATTGGGTTAGTCAATCGATTCATAACCACCTTTCGAGCACAGCCATTTCGAGCACAACCAATATATATTAGAACCCCCTTTACTTGCCGGAGCACATCTTGGATCTGTCAATTATGTTATGGTCGGAGTTCCACTCATGGCGATCTGGTCGAATTGGGGGAAGCTGTAGGTGTTATTGCGGGTCAATCTATTGGGGAGCCAGGGACTCAACTAACATTAAGAACTTTTCATACTGGTGGGGTATTCACAGGGGGTACTGCCGACCTTGTACGATCCCCTTCAAATGGAAAAATCCAATTCAATGGGGATTTGGTTCACCCCACACGTACCCGTCATGGGCAGCCTGCTTTTCTATGTTATATAGACTTGCATATAACTATTCAGAGTCAGGATATTCTACATAGTGTGACTATTCCTTCAAAAAGCTTGATTCTAGTGCAAAATGATCAATATGTAGAATCCGAACAAGTAATTGCGGAGATTCGTGCCGGAACGTCCGCTTTGCATTTTAAAGAAAAGGTACAAAAACATATTTATTCCGAATCAGATGGGGAAATGCACTGGAGTACCGATGTTTATCATGCGCCCGAATATCAATATGGTAATCTTCGTCGATTACCAAAAACAAGCCATTTATGGATATTGTCAGTAA
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| CDS seq | ATGTGCCAGGAAAAATTGGTACAAGAAGCCGTGGATACACTTCTTGATAGTGGGTCCCGCGGGCAACCAACGAGGGATGGTCACAATAAAGTATACAAATCACTTTCAGATGTAATTGAAGGTAAAGAGGGGAGGTTTCGCGAAACTCTGCTTGGGAAACGGGTCGATTACTCGGGGCGTTCTGTCATTGTTGTGGGTCCTTCACTTTCATTACATCAATGTGGGTTACCTCTAGAGATAGCAATAAAGCTTTTTCAGCTATTTGTAATTCGCGATTTAATCACGAAACGTGCTACTTCTAATGTTAGGATTGCTAAAAGGAAAATTTGGGAAAAGGAACCCATTactttgatggggatcaaatggctgttcatctacctttatccttggaagctcaggcggaagctcaaacaaatctgtttagacagtcccttgtggctccgatggaaactagatcaacgcgtcattgggttaagagaagttccgattgaagttcaatatgaatctttggggacttatcGAGCTAGAGGAAATGCATCGCAGGTACACCAATTAGTAGGTATGCGAGGATTAATGGCGGATCCTCAAGGACAAATGATTGATTTACCTATTCAAAGCAATTTACGCGAGGGACTTTCTTTGACAGAATATATAATTTCCTGCTACGGAGCCCGCAAAGGGGTTGTAGATACTGCTGTACGAACGGCGGATGCTGGATATCTTACACGTAGACTTGTTGAAGTAGTTCAACATATTATTAGTCAGGATATTCTACATAGTGTGACTATTCCTTCAAAAAGCTTGATTCTAGTGCAAAATGATCAATATGTAGAATCCGAACAAGTAATTGCGGAGATTCGTGCCGGAACGTCCGCTTTGCATTTTAAAGAAAAGATGGGGAAATGCACTGGAGTACCGATGTTTATCATGCGCCCGAATATCAATATGGTAATCTTCGTCGATTACCAAAAACAAGCCATTTATGGATATTGTCAGTAA
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| Protein seq | MCQEKLVQEAVDTLLDSGSRGQPTRDGHNKVYKSLSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHQCGLPLEIAIKLFQLFVIRDLITKRATSNVRIAKRKIWEKEPITLMGIKWLFIYLYPWKLRRKLKQICLDSPLWLRWKLDQRVIGLREVPIEVQYESLGTYRARGNASQVHQLVGMRGLMADPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTADAGYLTRRLVEVVQHIISQDILHSVTIPSKSLILVQNDQYVESEQVIAEIRAGTSALHFKEKMGKCTGVPMFIMRPNINMVIFVDYQKQAIYGYCQ |
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| Function | DNA-directed RNA polymerase subunit beta' [UniProtKB/Swiss-Prot:B3TN43] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_03g0017580 | OsLaMu_03g0017580.01 | Chr03 | 14091549 | 14094285 | + | NAM | ||
| CDS seq | ATGTGCCAGGAAAAATTGGTACAAGAAGCCGTGGATACACTTCTTGATAGTGGGTCCCGCGGGCAACCAACGAGGGATGGTCACAATAAAGTATACAAATCACTTTCAGATGTAATTGAAGGTAAAGAGGGGAGGTTTCGCGAAACTCTGCTTGGGAAACGGGTCGATTACTCGGGGCGTTCTGTCATTGTTGTGGGTCCTTCACTTTCATTACATCAATGTGGGTTACCTCTAGAGATAGCAATAAAGCTTTTTCAGCTATTTGTAATTCGCGATTTAATCACGAAACGTGCTACTTCTAATGTTAGGATTGCTAAAAGGAAAATTTGGGAAAAGGAACCCATTactttgatggggatcaaatggctgttcatctacctttatccttggaagctcaggcggaagctcaaacaaatctgtttagacagtcccttgtggctccgatggaaactagatcaacgcgtcattgggttaagagaagttccgattgaagttcaatatgaatctttggggacttatcGAGCTAGAGGAAATGCATCGCAGGTACACCAATTAGTAGGTATGCGAGGATTAATGGCGGATCCTCAAGGACAAATGATTGATTTACCTATTCAAAGCAATTTACGCGAGGGACTTTCTTTGACAGAATATATAATTTCCTGCTACGGAGCCCGCAAAGGGGTTGTAGATACTGCTGTACGAACGGCGGATGCTGGATATCTTACACGTAGACTTGTTGAAGTAGTTCAACATATTATTAGTCAGGATATTCTACATAGTGTGACTATTCCTTCAAAAAGCTTGATTCTAGTGCAAAATGATCAATATGTAGAATCCGAACAAGTAATTGCGGAGATTCGTGCCGGAACGTCCGCTTTGCATTTTAAAGAAAAGATGGGGAAATGCACTGGAGTACCGATGTTTATCATGCGCCCGAATATCAATATGGTAATCTTCGTCGATTACCAAAAACAAGCCATTTATGGATATTGTCAGTAA
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| Protein seq | MCQEKLVQEAVDTLLDSGSRGQPTRDGHNKVYKSLSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHQCGLPLEIAIKLFQLFVIRDLITKRATSNVRIAKRKIWEKEPITLMGIKWLFIYLYPWKLRRKLKQICLDSPLWLRWKLDQRVIGLREVPIEVQYESLGTYRARGNASQVHQLVGMRGLMADPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTADAGYLTRRLVEVVQHIISQDILHSVTIPSKSLILVQNDQYVESEQVIAEIRAGTSALHFKEKMGKCTGVPMFIMRPNINMVIFVDYQKQAIYGYCQ
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 1.274495 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g079103H | RBH | 22.261295 | 25.479412 | 23.183260 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0009220 | RBH | 12.195412 | 25.992975 | 62.252941 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0009320 | RBH | 4.485611 | 17.265240 | 19.985645 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0009170 | RBH | 0.000000 | 0.000000 | 6.591807 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0035654 | RBH | 4.330403 | 0.924056 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0017640 | RBH | 0.000000 | 0.000000 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0017480 | RBH | 10.510061 | 2.784522 | 11.244089 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0225200 | RBH | 115.8236505 | 76.491562 | 76.39603 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0017711 | RBH | 7.197295 | 0.635686 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0017731 | RBH | 6.965656 | 67.345078 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0017810 | RBH | 144.745743 | 108.117096 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0017680 | RBH | 0.000000 | 0.000000 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G017570 | RBH | 5.882053 | 16.944687 | 17.966351 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0017210 | SBH | 42.124535 | 341.575989 | 151.453018 |
