Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_12g0012560 | OGI:12014630 | 14/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr12:15919331-15920681 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgccgagctggctgggagctggtgcaggcgctgctcttcgtgtccatgtgagccaagtcctttacccggtgaccggcgaggtactacatcaagtctacaatgcttatggaccagtggcggtgcaagtgctcgccacgagtggttcgggtgttgaggcgctagtctggttccagacaagctgtgacgcggagagggctcaatctgataccaatgaatgcaacatttacgatgggtgttgcctgcttgatgtccagcacacacatcctttccttggagatgatgctgacatgatgcccaccaagtgttcgatgttaggaccaagttatgccaccaccacatcaggggccaagagcataccagctgcagcagaatacgtgtacgtgttcccagccactaaagcttcattggcaccctcaacttcatcgacaaccatggtgactccggcaccttccactgagaccaaggatgttggggctggcatggacaaggcggcgttgaaatcagaggaaaccactcaggacttgtacactaagatgatggccatgatcgataaattgttggagacatgccgtgacaccaaggaggattataccgtgagtgtggattccaatggagatgccgcagcacagtgcgtcaacattgatccagtacccatcttattagaggtcagtaatgaggctaattcaactcaacttgtcaacactaacaagctttgtttggtgaaagtgaaatcaaccaaggatttgacaaaaaggaaaaaagaaaaggttgatggtgatgtcagtggtatggtcactgatgattgtgtcgcgtttacaaatgttgataccaagctcatttctgtgttcagaccatttagagatgagagtttgattttgtgtcggagcaattacattgttgtcgccaaccttctggctatctcttctgaatgtgaggtctgctatgatgattttgtcttaggggcagatttcacagctagactgctagtattaccttcctggagactggcaggtcctgtggattttcgattcttgccatggccggatataattaatcaaggaagcggaggcatggtggtgaagctcttacaaccttggccaccacctactcaagcagaagttaaagctaaaaagaaagtactaaatttatatggtcaaaaaccggagattcagattatcgtaacagtgtgtttagtttccaaggctgccataaaagggctacaattgttgggtgaacgaatgttacaggaagagcaactgaagtgtgaggttgtcaagtccaattggtacagtttttcaaatcttttagttggagatataatggatactgctctgcctatgcagtcactga
More
|
||||||||||
| CDS seq | atgccgagctggctgggagctggtgcaggcgctgctcttcgtgtccatgtgagccaagtcctttacccggtgaccggcgaggtactacatcaagtctacaatgcttatggaccagtggcggtgcaagtgctcgccacgagtggttcgggtgttgaggcgctagtctggttccagacaagctgtgacgcggagagggctcaatctgataccaatgaatgcaacatttacgatgggtgttgcctgcttgatgtccagcacacacatcctttccttggagatgatgctgacatgatgcccaccaagtgttcgatgttaggaccaagttatgccaccaccacatcaggggccaagagcataccagctgcagcagaatacgtgtacgtgttcccagccactaaagcttcattggcaccctcaacttcatcgacaaccatggtgactccggcaccttccactgagaccaaggatgttggggctggcatggacaaggcggcgttgaaatcagaggaaaccactcaggacttgtacactaagatgatggccatgatcgataaattgttggagacatgccgtgacaccaaggaggattataccgtgagtgtggattccaatggagatgccgcagcacagtgcgtcaacattgatccagtacccatcttattagaggtcagtaatgaggctaattcaactcaacttgtcaacactaacaagctttgtttggtgaaagtgaaatcaaccaaggatttgacaaaaaggaaaaaagaaaaggttgatggtgatgtcagtggtatggtcactgatgattgtgtcgcgtttacaaatgttgataccaagctcatttctgtgttcagaccatttagagatgagagtttgattttgtgtcggagcaattacattgttgtcgccaaccttctggctatctcttctgaatgtgaggtctgctatgatgattttgtcttaggggcagatttcacagctagactgctagtattaccttcctggagactggcaggtcctgtggattttcgattcttgccatggccggatataattaatcaaggaagcggaggcatggtggtgaagctcttacaaccttggccaccacctactcaagcagaagttaaagctaaaaagaaagtactaaatttatatggtcaaaaaccggagattcagattatcgtaacagtgtgtttagtttccaaggctgccataaaagggctacaattgttgggtgaacgaatgttacaggaagagcaactgaagtgtgaggttgtcaagtccaattgtcactga
More
|
||||||||||
| Protein seq | MPSWLGAGAGAALRVHVSQVLYPVTGEVLHQVYNAYGPVAVQVLATSGSGVEALVWFQTSCDAERAQSDTNECNIYDGCCLLDVQHTHPFLGDDADMMPTKCSMLGPSYATTTSGAKSIPAAAEYVYVFPATKASLAPSTSSTTMVTPAPSTETKDVGAGMDKAALKSEETTQDLYTKMMAMIDKLLETCRDTKEDYTVSVDSNGDAAAQCVNIDPVPILLEVSNEANSTQLVNTNKLCLVKVKSTKDLTKRKKEKVDGDVSGMVTDDCVAFTNVDTKLISVFRPFRDESLILCRSNYIVVANLLAISSECEVCYDDFVLGADFTARLLVLPSWRLAGPVDFRFLPWPDIINQGSGGMVVKLLQPWPPPTQAEVKAKKKVLNLYGQKPEIQIIVTVCLVSKAAIKGLQLLGERMLQEEQLKCEVVKSNCH |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_12g0012560 | OsKeNa_12g0012560.01 | Chr12 | 15919331 | 15920681 | + | NAM | ||
| CDS seq | atgccgagctggctgggagctggtgcaggcgctgctcttcgtgtccatgtgagccaagtcctttacccggtgaccggcgaggtactacatcaagtctacaatgcttatggaccagtggcggtgcaagtgctcgccacgagtggttcgggtgttgaggcgctagtctggttccagacaagctgtgacgcggagagggctcaatctgataccaatgaatgcaacatttacgatgggtgttgcctgcttgatgtccagcacacacatcctttccttggagatgatgctgacatgatgcccaccaagtgttcgatgttaggaccaagttatgccaccaccacatcaggggccaagagcataccagctgcagcagaatacgtgtacgtgttcccagccactaaagcttcattggcaccctcaacttcatcgacaaccatggtgactccggcaccttccactgagaccaaggatgttggggctggcatggacaaggcggcgttgaaatcagaggaaaccactcaggacttgtacactaagatgatggccatgatcgataaattgttggagacatgccgtgacaccaaggaggattataccgtgagtgtggattccaatggagatgccgcagcacagtgcgtcaacattgatccagtacccatcttattagaggtcagtaatgaggctaattcaactcaacttgtcaacactaacaagctttgtttggtgaaagtgaaatcaaccaaggatttgacaaaaaggaaaaaagaaaaggttgatggtgatgtcagtggtatggtcactgatgattgtgtcgcgtttacaaatgttgataccaagctcatttctgtgttcagaccatttagagatgagagtttgattttgtgtcggagcaattacattgttgtcgccaaccttctggctatctcttctgaatgtgaggtctgctatgatgattttgtcttaggggcagatttcacagctagactgctagtattaccttcctggagactggcaggtcctgtggattttcgattcttgccatggccggatataattaatcaaggaagcggaggcatggtggtgaagctcttacaaccttggccaccacctactcaagcagaagttaaagctaaaaagaaagtactaaatttatatggtcaaaaaccggagattcagattatcgtaacagtgtgtttagtttccaaggctgccataaaagggctacaattgttgggtgaacgaatgttacaggaagagcaactgaagtgtgaggttgtcaagtccaattgtcactga
More
|
|||||||
| Protein seq | MPSWLGAGAGAALRVHVSQVLYPVTGEVLHQVYNAYGPVAVQVLATSGSGVEALVWFQTSCDAERAQSDTNECNIYDGCCLLDVQHTHPFLGDDADMMPTKCSMLGPSYATTTSGAKSIPAAAEYVYVFPATKASLAPSTSSTTMVTPAPSTETKDVGAGMDKAALKSEETTQDLYTKMMAMIDKLLETCRDTKEDYTVSVDSNGDAAAQCVNIDPVPILLEVSNEANSTQLVNTNKLCLVKVKSTKDLTKRKKEKVDGDVSGMVTDDCVAFTNVDTKLISVFRPFRDESLILCRSNYIVVANLLAISSECEVCYDDFVLGADFTARLLVLPSWRLAGPVDFRFLPWPDIINQGSGGMVVKLLQPWPPPTQAEVKAKKKVLNLYGQKPEIQIIVTVCLVSKAAIKGLQLLGERMLQEEQLKCEVVKSNCH
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0012420 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0006670 | SBH | 0.000000 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0012250 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0011940 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0012140 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0012410 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0012270 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0000350 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G012180 | RBH | 0.227187 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0011990 | RBH | 0.0 | 0.0 | 0.0 |
